Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47373 * 2 1 4 4 H 1.08992 * 109.47278 * 54.99900 * 3 2 1 5 5 C 1.53007 * 109.47021 * 294.99816 * 3 2 1 6 6 C 1.50698 * 109.46830 * 175.00005 * 3 2 1 7 7 O 1.21277 * 120.00465 * 25.86479 * 6 3 2 8 8 N 1.34783 * 119.99478 * 205.86421 * 6 3 2 9 9 C 1.46766 * 125.33075 * 174.88379 * 8 6 3 10 10 C 1.53985 * 106.67312 * 198.45315 * 9 8 6 11 11 H 1.09000 * 113.34547 * 209.06187 * 10 9 8 12 12 C 1.53674 * 109.29725 * 82.34317 * 10 9 8 13 13 N 1.46661 * 107.96741 * 233.05601 * 12 10 9 14 14 C 1.34779 * 125.33105 * 179.32798 * 13 12 10 15 15 O 1.21277 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00020 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47352 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00153 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99771 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00049 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47173 * 120.00784 * 22 20 18 25 25 H 1.48500 * 109.46873 * 240.00427 * 22 20 18 26 26 C 1.46759 * 109.33140 * 359.29482 * 13 12 10 27 27 C 1.53982 * 106.67609 * 18.44858 * 26 13 12 28 28 H 1.09000 * 112.79815 * 209.36470 * 27 26 13 29 29 C 1.46655 * 125.33615 * 354.88647 * 8 6 3 30 30 H 1.08991 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47101 * 300.00978 * 1 2 3 32 32 H 1.09007 * 109.46750 * 59.99848 * 1 2 3 33 33 H 1.08999 * 109.47057 * 239.99809 * 2 1 3 34 34 H 1.08999 * 109.46489 * 119.99999 * 2 1 3 35 35 H 1.08999 * 109.47152 * 186.02757 * 5 3 2 36 36 H 1.08999 * 109.46702 * 306.02979 * 5 3 2 37 37 H 1.09001 * 109.46826 * 66.02298 * 5 3 2 38 38 H 1.09001 * 110.01466 * 79.14881 * 9 8 6 39 39 H 1.08999 * 110.05510 * 317.77761 * 9 8 6 40 40 H 1.09000 * 109.76842 * 352.68264 * 12 10 9 41 41 H 1.08994 * 109.76430 * 113.41437 * 12 10 9 42 42 H 1.09000 * 109.47409 * 300.00458 * 16 14 13 43 43 H 1.09003 * 109.47467 * 59.99923 * 16 14 13 44 44 H 0.96995 * 120.00076 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.01774 * 259.14029 * 26 13 12 46 46 H 1.09007 * 110.01264 * 137.75281 * 26 13 12 47 47 H 1.08994 * 109.76749 * 59.66438 * 29 8 6 48 48 H 1.08999 * 109.77118 * 298.91821 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 1.6354 2.1265 -1.3074 6 6 3.5420 1.4441 0.1238 7 8 4.1828 0.4868 -0.2553 8 7 4.1730 2.5096 0.6560 9 6 5.6125 2.5941 0.9295 10 6 5.8047 3.7466 1.9325 11 1 6.7733 4.2387 1.8445 12 6 5.5244 3.2347 3.3541 13 7 4.5321 4.1235 3.9675 14 6 4.0257 3.9873 5.2091 15 8 4.3895 3.0708 5.9152 16 6 3.0074 4.9737 5.7199 17 16 2.5256 4.5251 7.4059 18 6 1.3643 5.8065 7.7436 19 1 1.1522 6.5543 6.9938 20 6 0.7213 5.8542 8.9727 21 7 0.9795 4.9425 9.8863 22 14 -0.5103 7.2123 9.3304 23 1 -0.6212 8.1040 8.1481 24 1 -1.8368 6.6129 9.6240 25 1 -0.0524 7.9995 10.5034 26 6 4.1776 5.1848 3.0179 27 6 4.6120 4.6941 1.6245 28 1 4.8790 5.5106 0.9535 29 6 3.5289 3.7661 1.0524 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 2.0884 3.1168 -1.3548 36 1 1.9792 1.5289 -2.1517 37 1 0.5502 2.2210 -1.3472 38 1 6.1554 2.8065 0.0085 39 1 5.9660 1.6589 1.3636 40 1 5.1318 2.2189 3.3094 41 1 6.4440 3.2491 3.9390 42 1 3.4391 5.9745 5.7199 43 1 2.1294 4.9569 5.0741 44 1 0.5304 4.9760 10.7454 45 1 4.7058 6.1039 3.2713 46 1 3.1012 5.3559 3.0345 47 1 2.7732 3.5690 1.8127 48 1 3.0649 4.2327 0.1835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055175623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -77.653596 kcal Electronic energy + Delta-G solvation = -27856.042622 eV Core-core repulsion = 24036.632827 eV Total energy + Delta-G solvation = -3819.409795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26765 -39.66683 -38.18142 -35.70017 -35.32153 -32.46189 -32.05368 -31.16366 -30.08631 -29.15310 -26.59881 -26.19527 -25.52487 -24.90593 -22.67933 -21.43982 -20.46076 -19.66712 -19.11381 -17.82203 -17.39826 -17.12590 -16.51934 -15.87223 -15.61823 -15.15190 -15.05108 -14.83502 -14.52069 -14.15662 -13.99945 -13.84690 -13.66082 -13.45310 -13.11907 -12.94634 -12.85688 -12.66329 -12.50548 -12.46740 -12.32950 -12.00710 -11.86006 -11.83694 -11.43468 -11.34779 -11.15040 -11.09675 -11.06922 -11.04622 -10.95223 -10.78637 -9.94048 -9.84175 -9.49000 -9.10542 -8.93980 -8.57010 -8.26588 -6.54132 -6.24826 -3.95916 2.37722 2.65522 2.84988 2.99700 3.19064 3.23372 3.28532 3.56147 3.70481 4.00307 4.11137 4.17435 4.31435 4.46386 4.60514 4.65714 4.72213 4.82289 4.98082 5.00658 5.05064 5.09777 5.10414 5.15930 5.19936 5.26047 5.31260 5.39948 5.41854 5.45206 5.50318 5.56674 5.58134 5.62819 5.66176 5.68917 5.79049 5.81796 5.85383 5.95233 5.97643 6.06978 6.10275 6.37159 7.18030 7.55979 7.58141 7.90180 8.32010 8.49191 9.20477 10.82646 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.002739 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.860248 B =10220.585191 C =11358.926195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.108 4.108 4 H 0.093 0.907 5 C -0.141 4.141 6 C 0.535 3.465 7 O -0.539 6.539 8 N -0.615 5.615 9 C 0.115 3.885 10 C -0.107 4.107 11 H 0.115 0.885 12 C 0.115 3.885 13 N -0.623 5.623 14 C 0.547 3.453 15 O -0.512 6.512 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.109 3.891 27 C -0.107 4.107 28 H 0.115 0.885 29 C 0.105 3.895 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -0.303 -24.686 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.130 4.130 4 H 0.111 0.889 5 C -0.198 4.198 6 C 0.325 3.675 7 O -0.415 6.415 8 N -0.350 5.350 9 C -0.008 4.008 10 C -0.126 4.126 11 H 0.133 0.867 12 C -0.008 4.008 13 N -0.361 5.361 14 C 0.336 3.664 15 O -0.385 6.385 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.015 4.015 27 C -0.126 4.126 28 H 0.133 0.867 29 C -0.018 4.018 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.432 -2.347 -23.591 24.321 hybrid contribution -1.177 2.105 -0.475 2.458 sum 4.255 -0.242 -24.066 24.441 Atomic orbital electron populations 1.21829 0.95129 1.02081 1.02049 1.21379 0.95804 0.93892 1.03369 1.21347 0.91160 0.99652 1.00797 0.88918 1.21763 1.02286 1.00166 0.95591 1.20433 0.90121 0.80725 0.76258 1.90697 1.68155 1.34177 1.48474 1.48245 1.08661 1.15123 1.62946 1.21863 0.81898 0.98897 0.98093 1.22948 0.99704 0.95681 0.94295 0.86738 1.21739 0.92846 0.94519 0.91677 1.48245 1.43905 1.29438 1.14473 1.20047 0.81471 0.85865 0.79034 1.90723 1.59660 1.33125 1.55040 1.23507 0.99331 1.00614 1.06226 1.85455 1.53687 1.39427 1.04849 1.22886 1.27784 1.14256 1.03381 0.90873 1.24999 0.96867 0.96651 0.95079 1.70026 1.41172 1.33213 1.05786 0.86113 0.80185 0.80768 0.78403 1.19602 1.20551 1.20554 1.21971 1.01411 0.91227 0.86884 1.22918 0.94725 0.98035 0.96952 0.86711 1.22010 0.95884 0.83955 0.99935 0.92342 0.92429 0.92430 0.90931 0.91553 0.92355 0.91892 0.90990 0.91173 0.90150 0.91390 0.91192 0.89235 0.89356 0.92200 0.90844 0.90082 0.90633 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.11 -1.00 4.86 -26.73 -0.13 -1.13 16 3 C -0.11 -0.97 2.18 -91.77 -0.20 -1.17 16 4 H 0.09 0.78 7.21 -51.93 -0.37 0.41 16 5 C -0.14 -0.96 8.78 37.16 0.33 -0.63 16 6 C 0.54 6.14 6.93 -10.98 -0.08 6.07 16 7 O -0.54 -8.08 16.52 5.56 0.09 -7.98 16 8 N -0.62 -5.90 3.31 -172.33 -0.57 -6.47 16 9 C 0.12 0.99 6.02 -3.38 -0.02 0.97 16 10 C -0.11 -0.79 4.09 -88.48 -0.36 -1.15 16 11 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 12 C 0.12 1.33 6.24 -3.60 -0.02 1.30 16 13 N -0.62 -8.34 3.31 -172.34 -0.57 -8.91 16 14 C 0.55 10.24 7.85 -10.99 -0.09 10.15 16 15 O -0.51 -11.81 16.17 5.56 0.09 -11.72 16 16 C -0.15 -2.89 5.19 36.00 0.19 -2.70 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.53 -14.96 9.50 30.94 0.29 -14.66 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 22 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.11 0.97 5.78 -3.39 -0.02 0.95 16 27 C -0.11 -0.68 4.09 -88.48 -0.36 -1.04 16 28 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 29 C 0.11 0.77 5.68 -3.61 -0.02 0.75 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.37 6.70 -51.92 -0.35 0.02 16 33 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.35 7.15 -51.93 -0.37 -0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.40 6.87 -51.93 -0.36 0.04 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.81 7.78 -51.93 -0.40 0.40 16 40 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.59 7.87 -51.92 -0.41 1.18 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.69 7.25 -51.93 -0.38 0.32 16 47 H 0.08 0.65 6.99 -51.93 -0.36 0.28 16 48 H 0.07 0.40 7.15 -51.93 -0.37 0.03 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -36.41 394.32 -9.70 -46.11 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.95 Total: -2.87 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.23 Total: -1.12 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.41 Total: -40.53 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.41 -9.70 -46.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055175623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.545 kcal (2) G-P(sol) polarization free energy of solvation -36.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds