Wall clock time and date at job start Sat Apr 11 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 H 1.08998 * 115.54371 * 29.33373 * 3 2 1 5 5 C 1.53067 * 117.51709 * 243.61162 * 3 2 1 6 6 C 1.52991 * 117.49923 * 174.99903 * 3 2 1 7 7 H 1.09003 * 117.49730 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.50025 * 215.00416 * 6 3 2 9 9 O 1.21284 * 119.99838 * 0.09392 * 8 6 3 10 10 N 1.34779 * 120.00113 * 180.08639 * 8 6 3 11 11 C 1.46494 * 120.00167 * 179.72635 * 10 8 6 12 12 C 1.52996 * 109.47533 * 182.72636 * 11 10 8 13 13 N 1.46500 * 112.84794 * 293.95976 * 12 11 10 14 14 C 1.34775 * 119.99900 * 294.93746 * 13 12 11 15 15 O 1.21281 * 120.00256 * 354.98050 * 14 13 12 16 16 C 1.50701 * 120.00017 * 174.97857 * 14 13 12 17 17 S 1.80998 * 109.47098 * 180.02562 * 16 14 13 18 18 C 1.76207 * 99.99725 * 180.02562 * 17 16 14 19 19 H 1.07992 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99399 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00701 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99466 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47361 * 59.99723 * 22 20 18 24 24 H 1.48506 * 109.46957 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47113 * 299.99567 * 22 20 18 26 26 C 1.53777 * 113.61548 * 162.75883 * 12 11 10 27 27 C 1.53954 * 87.02136 * 220.05181 * 26 12 11 28 28 C 1.53780 * 87.11007 * 25.36477 * 27 26 12 29 29 H 1.09004 * 109.47464 * 60.00007 * 1 2 3 30 30 H 1.09006 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47149 * 299.99166 * 1 2 3 32 32 H 1.08999 * 109.47149 * 240.00834 * 2 1 3 33 33 H 1.08992 * 109.47467 * 120.00407 * 2 1 3 34 34 H 1.08996 * 117.51494 * 145.04526 * 5 3 2 35 35 H 1.09001 * 117.49292 * 0.02562 * 5 3 2 36 36 H 0.97000 * 119.99930 * 0.02562 * 10 8 6 37 37 H 1.09005 * 109.47297 * 302.72752 * 11 10 8 38 38 H 1.09002 * 109.47133 * 62.72533 * 11 10 8 39 39 H 0.96999 * 120.00320 * 114.94414 * 13 12 11 40 40 H 1.09005 * 109.47145 * 300.00118 * 16 14 13 41 41 H 1.09000 * 109.47057 * 59.99982 * 16 14 13 42 42 H 0.96995 * 120.00548 * 180.02562 * 21 20 18 43 43 H 1.09000 * 113.61772 * 334.57116 * 26 12 11 44 44 H 1.09004 * 113.61451 * 105.47442 * 26 12 11 45 45 H 1.09008 * 113.53566 * 270.81251 * 27 26 12 46 46 H 1.08993 * 113.74505 * 139.94935 * 27 26 12 47 47 H 1.08999 * 113.61267 * 220.09411 * 28 27 26 48 48 H 1.08995 * 113.69500 * 89.20138 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8445 1.9082 -1.2161 6 6 3.5500 1.6580 0.1183 7 1 4.1802 0.7720 0.1957 8 6 4.0227 2.8618 0.8919 9 8 3.2156 3.6153 1.3938 10 7 5.3423 3.1010 1.0262 11 6 5.8017 4.2745 1.7731 12 6 7.3288 4.3490 1.7171 13 7 7.9787 3.2394 2.4190 14 6 7.8415 3.1138 3.7539 15 8 7.2574 3.9678 4.3865 16 6 8.4140 1.9120 4.4604 17 16 8.0678 2.0326 6.2328 18 6 8.8266 0.5447 6.7946 19 1 9.3114 -0.1138 6.0892 20 6 8.8011 0.2193 8.1436 21 7 8.2106 1.0222 9.0034 22 14 9.6061 -1.3576 8.7393 23 1 11.0523 -1.3326 8.4035 24 1 9.4409 -1.4725 10.2106 25 1 8.9642 -2.5217 8.0772 26 6 7.8924 5.7298 2.0924 27 6 8.9082 5.5360 0.9519 28 6 7.8822 4.5920 0.3030 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.7223 2.9435 -1.5343 35 1 3.0100 1.1867 -2.0162 36 1 5.9877 2.4985 0.6246 37 1 5.3775 5.1759 1.3307 38 1 5.4798 4.1933 2.8114 39 1 8.5077 2.5951 1.9231 40 1 7.9584 1.0053 4.0623 41 1 9.4919 1.8768 4.3019 42 1 8.1931 0.7950 9.9462 43 1 7.1934 6.5482 1.9201 44 1 8.3470 5.7614 3.0825 45 1 9.8246 5.0358 1.2655 46 1 9.0964 6.4404 0.3734 47 1 8.3286 3.7064 -0.1492 48 1 7.1799 5.0974 -0.3598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064633247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:36 Heat of formation + Delta-G solvation = -42.862276 kcal Electronic energy + Delta-G solvation = -27089.778051 eV Core-core repulsion = 23271.876921 eV Total energy + Delta-G solvation = -3817.901130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77237 -39.82707 -37.89828 -37.20155 -34.46864 -33.07081 -32.44152 -32.31482 -29.44926 -28.11312 -26.01546 -25.50759 -24.66257 -23.95210 -22.56175 -20.93288 -20.71972 -20.19174 -19.17274 -17.87887 -17.56829 -16.45260 -16.35609 -15.78932 -15.50181 -15.21430 -14.92515 -14.82034 -14.72021 -14.55460 -14.35947 -14.05839 -13.54217 -13.30749 -12.97129 -12.73123 -12.67807 -12.55660 -12.45136 -12.39012 -12.21313 -11.79013 -11.60259 -11.30480 -11.12650 -11.06281 -11.05240 -10.98084 -10.78428 -10.56519 -10.53582 -10.29799 -9.88622 -9.84308 -9.42287 -9.09185 -9.06406 -8.91446 -8.25661 -6.51413 -6.22693 -3.93609 2.41202 2.89064 3.01875 3.03584 3.22138 3.25620 3.28513 3.57455 3.62988 4.16678 4.19320 4.30778 4.44506 4.48718 4.52713 4.57530 4.68198 4.89137 4.94159 5.02453 5.06649 5.12319 5.16268 5.23554 5.34483 5.37961 5.45705 5.48582 5.51851 5.62963 5.64757 5.66007 5.71571 5.82780 5.83107 5.85372 5.87825 5.94678 6.04687 6.09267 6.10203 6.11773 6.34282 6.66953 7.40291 7.57481 7.63272 8.16743 8.33382 8.56654 9.22320 10.84620 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008298 B = 0.002920 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.502258 B = 9585.709953 C =12182.006903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.116 4.116 4 H 0.118 0.882 5 C -0.150 4.150 6 C -0.191 4.191 7 H 0.123 0.877 8 C 0.541 3.459 9 O -0.540 6.540 10 N -0.719 5.719 11 C 0.120 3.880 12 C 0.143 3.857 13 N -0.721 5.721 14 C 0.535 3.465 15 O -0.506 6.506 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.134 4.134 27 C -0.138 4.138 28 C -0.136 4.136 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.398 0.602 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 1.956 -25.421 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.135 4.135 4 H 0.136 0.864 5 C -0.187 4.187 6 C -0.212 4.212 7 H 0.141 0.859 8 C 0.327 3.673 9 O -0.417 6.417 10 N -0.369 5.369 11 C -0.004 4.004 12 C 0.056 3.944 13 N -0.376 5.376 14 C 0.322 3.678 15 O -0.379 6.379 16 C -0.304 4.304 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.173 4.173 27 C -0.176 4.176 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.232 0.768 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.233 0.767 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.590 3.973 -23.767 24.982 hybrid contribution 1.960 -2.687 -0.667 3.392 sum -4.630 1.286 -24.434 24.902 Atomic orbital electron populations 1.21739 0.95142 1.01680 1.02146 1.21165 0.96350 0.93573 1.02249 1.22491 0.91399 0.98826 1.00767 0.86391 1.23100 1.02318 1.03000 0.90275 1.22301 0.98002 0.98981 1.01904 0.85942 1.19644 0.82191 0.85562 0.79860 1.90711 1.53901 1.48760 1.48288 1.45765 1.06847 1.28556 1.55778 1.21670 0.92488 0.88022 0.98266 1.21438 0.90715 0.88910 0.93385 1.45737 1.54649 1.29408 1.07783 1.20301 0.79127 0.87342 0.81072 1.90711 1.40529 1.41547 1.65138 1.23536 1.03555 0.97920 1.05398 1.85435 1.74653 1.31193 0.91773 1.22816 1.42042 1.07970 0.95701 0.91031 1.24987 0.95227 0.97703 0.95624 1.70000 1.40819 1.36320 1.03080 0.86233 0.79591 0.82018 0.77707 1.19945 1.20788 1.19941 1.23203 0.98371 0.95378 1.00307 1.22858 0.97459 0.99684 0.97569 1.23212 0.99056 1.00433 0.94675 0.92618 0.92592 0.92376 0.91711 0.91194 0.88399 0.87878 0.76816 0.90652 0.89713 0.76669 0.89345 0.89345 0.92091 0.89219 0.89695 0.89951 0.91111 0.90875 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.87 37.16 0.37 -0.70 16 2 C -0.10 -0.74 6.22 -26.73 -0.17 -0.90 16 3 C -0.12 -1.08 5.25 -90.59 -0.48 -1.56 16 4 H 0.12 1.33 7.60 -51.93 -0.39 0.94 16 5 C -0.15 -1.14 9.88 -26.70 -0.26 -1.40 16 6 C -0.19 -1.81 5.91 -91.78 -0.54 -2.35 16 7 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.54 6.99 7.61 -10.98 -0.08 6.90 16 9 O -0.54 -9.29 16.26 5.55 0.09 -9.19 16 10 N -0.72 -7.88 5.43 -60.30 -0.33 -8.21 16 11 C 0.12 1.53 4.99 -4.05 -0.02 1.51 16 12 C 0.14 1.53 0.50 -131.01 -0.07 1.46 16 13 N -0.72 -8.56 5.15 -46.86 -0.24 -8.80 16 14 C 0.54 9.39 7.37 -10.99 -0.08 9.30 16 15 O -0.51 -10.91 13.71 5.56 0.08 -10.83 16 16 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 17 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 22 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C -0.13 -1.48 6.97 -25.83 -0.18 -1.66 16 27 C -0.14 -1.14 8.00 -25.83 -0.21 -1.34 16 28 C -0.14 -0.98 7.16 -25.92 -0.19 -1.17 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.41 7.88 -51.93 -0.41 0.00 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 36 H 0.40 3.27 8.39 -40.82 -0.34 2.93 16 37 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 38 H 0.08 1.47 6.91 -51.93 -0.36 1.11 16 39 H 0.40 3.51 8.66 -40.82 -0.35 3.16 16 40 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 41 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 43 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 44 H 0.08 1.20 7.27 -51.93 -0.38 0.82 16 45 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 48 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 410.65 15.07 6.19 6.19 Total: -1.00 -35.96 410.65 -10.30 -46.26 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.10 Total: 5.04 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.48 Total: -7.57 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.17 Total: -42.45 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.17 Total: -20.03 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.96 -10.30 -46.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064633247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.395 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds