Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 H 1.08998 * 115.54371 * 29.33373 * 3 2 1 5 5 C 1.53067 * 117.51709 * 243.61162 * 3 2 1 6 6 C 1.52991 * 117.49923 * 174.99903 * 3 2 1 7 7 H 1.09003 * 117.49730 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.50025 * 215.00416 * 6 3 2 9 9 O 1.21284 * 119.99838 * 0.09392 * 8 6 3 10 10 N 1.34779 * 120.00113 * 180.08639 * 8 6 3 11 11 C 1.46494 * 120.00167 * 179.72635 * 10 8 6 12 12 C 1.52996 * 109.47533 * 182.72636 * 11 10 8 13 13 N 1.46500 * 112.84794 * 293.95976 * 12 11 10 14 14 C 1.34775 * 119.99900 * 294.93746 * 13 12 11 15 15 O 1.21281 * 120.00256 * 354.98050 * 14 13 12 16 16 C 1.50701 * 120.00017 * 174.97857 * 14 13 12 17 17 S 1.80998 * 109.47098 * 180.02562 * 16 14 13 18 18 C 1.76207 * 99.99725 * 180.02562 * 17 16 14 19 19 H 1.07992 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99399 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00701 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99466 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47361 * 59.99723 * 22 20 18 24 24 H 1.48506 * 109.46957 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47113 * 299.99567 * 22 20 18 26 26 C 1.53777 * 113.61548 * 162.75883 * 12 11 10 27 27 C 1.53954 * 87.02136 * 220.05181 * 26 12 11 28 28 C 1.53780 * 87.11007 * 25.36477 * 27 26 12 29 29 H 1.09004 * 109.47464 * 60.00007 * 1 2 3 30 30 H 1.09006 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47149 * 299.99166 * 1 2 3 32 32 H 1.08999 * 109.47149 * 240.00834 * 2 1 3 33 33 H 1.08992 * 109.47467 * 120.00407 * 2 1 3 34 34 H 1.08996 * 117.51494 * 145.04526 * 5 3 2 35 35 H 1.09001 * 117.49292 * 0.02562 * 5 3 2 36 36 H 0.97000 * 119.99930 * 0.02562 * 10 8 6 37 37 H 1.09005 * 109.47297 * 302.72752 * 11 10 8 38 38 H 1.09002 * 109.47133 * 62.72533 * 11 10 8 39 39 H 0.96999 * 120.00320 * 114.94414 * 13 12 11 40 40 H 1.09005 * 109.47145 * 300.00118 * 16 14 13 41 41 H 1.09000 * 109.47057 * 59.99982 * 16 14 13 42 42 H 0.96995 * 120.00548 * 180.02562 * 21 20 18 43 43 H 1.09000 * 113.61772 * 334.57116 * 26 12 11 44 44 H 1.09004 * 113.61451 * 105.47442 * 26 12 11 45 45 H 1.09008 * 113.53566 * 270.81251 * 27 26 12 46 46 H 1.08993 * 113.74505 * 139.94935 * 27 26 12 47 47 H 1.08999 * 113.61267 * 220.09411 * 28 27 26 48 48 H 1.08995 * 113.69500 * 89.20138 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8445 1.9082 -1.2161 6 6 3.5500 1.6580 0.1183 7 1 4.1802 0.7720 0.1957 8 6 4.0227 2.8618 0.8919 9 8 3.2156 3.6153 1.3938 10 7 5.3423 3.1010 1.0262 11 6 5.8017 4.2745 1.7731 12 6 7.3288 4.3490 1.7171 13 7 7.9787 3.2394 2.4190 14 6 7.8415 3.1138 3.7539 15 8 7.2574 3.9678 4.3865 16 6 8.4140 1.9120 4.4604 17 16 8.0678 2.0326 6.2328 18 6 8.8266 0.5447 6.7946 19 1 9.3114 -0.1138 6.0892 20 6 8.8011 0.2193 8.1436 21 7 8.2106 1.0222 9.0034 22 14 9.6061 -1.3576 8.7393 23 1 11.0523 -1.3326 8.4035 24 1 9.4409 -1.4725 10.2106 25 1 8.9642 -2.5217 8.0772 26 6 7.8924 5.7298 2.0924 27 6 8.9082 5.5360 0.9519 28 6 7.8822 4.5920 0.3030 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.7223 2.9435 -1.5343 35 1 3.0100 1.1867 -2.0162 36 1 5.9877 2.4985 0.6246 37 1 5.3775 5.1759 1.3307 38 1 5.4798 4.1933 2.8114 39 1 8.5077 2.5951 1.9231 40 1 7.9584 1.0053 4.0623 41 1 9.4919 1.8768 4.3019 42 1 8.1931 0.7950 9.9462 43 1 7.1934 6.5482 1.9201 44 1 8.3470 5.7614 3.0825 45 1 9.8246 5.0358 1.2655 46 1 9.0964 6.4404 0.3734 47 1 8.3286 3.7064 -0.1492 48 1 7.1799 5.0974 -0.3598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064633247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = -68.322723 kcal Electronic energy + Delta-G solvation = -27090.882099 eV Core-core repulsion = 23271.876921 eV Total energy + Delta-G solvation = -3819.005178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80848 -40.82832 -39.12686 -38.01191 -35.51512 -34.60283 -34.31983 -32.93695 -30.83396 -29.23426 -27.67309 -26.78487 -25.45177 -24.59852 -23.49904 -22.02109 -21.54185 -21.10567 -20.20916 -19.83795 -18.47048 -17.86041 -17.34877 -16.89037 -16.87051 -16.55893 -16.31388 -16.03254 -15.78160 -15.48538 -15.37220 -15.10061 -14.86046 -14.64002 -14.35481 -13.90988 -13.58823 -13.53249 -13.32940 -13.28688 -13.18144 -12.98275 -12.88555 -12.80479 -12.62893 -12.20184 -11.94006 -11.88796 -11.86468 -11.74065 -11.39174 -11.28084 -11.13867 -11.06768 -10.84255 -10.79042 -10.28125 -10.16857 -10.05582 -8.67949 -8.35481 -6.13885 1.25009 1.42864 1.44201 1.45982 1.54781 1.61513 2.04697 2.21255 2.27294 2.84131 2.98608 3.29507 3.38633 3.54243 3.68216 3.71616 3.75482 3.87299 3.88136 3.98504 4.20219 4.27624 4.29270 4.37825 4.42835 4.47948 4.49900 4.56165 4.71415 4.77769 4.79878 4.85317 4.93343 4.99430 5.04240 5.10240 5.12632 5.14970 5.22338 5.26016 5.28456 5.37479 5.40040 5.48592 5.64689 6.18238 6.49164 6.52737 7.05517 7.21317 7.27265 8.73462 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008298 B = 0.002920 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.502258 B = 9585.709953 C =12182.006903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.132 4.132 4 H 0.087 0.913 5 C -0.122 4.122 6 C -0.196 4.196 7 H 0.147 0.853 8 C 0.532 3.468 9 O -0.594 6.594 10 N -0.703 5.703 11 C 0.127 3.873 12 C 0.137 3.863 13 N -0.692 5.692 14 C 0.537 3.463 15 O -0.554 6.554 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.261 1.261 26 C -0.147 4.147 27 C -0.127 4.127 28 C -0.111 4.111 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.416 0.584 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.420 0.580 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -0.458 -29.449 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.151 4.151 4 H 0.105 0.895 5 C -0.159 4.159 6 C -0.217 4.217 7 H 0.165 0.835 8 C 0.320 3.680 9 O -0.475 6.475 10 N -0.354 5.354 11 C 0.001 3.999 12 C 0.050 3.950 13 N -0.347 5.347 14 C 0.322 3.678 15 O -0.431 6.431 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.186 1.186 26 C -0.187 4.187 27 C -0.164 4.164 28 C -0.148 4.148 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.154 0.846 36 H 0.252 0.748 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.258 0.742 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.123 0.877 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.637 1.526 -27.878 28.302 hybrid contribution 1.317 -1.826 0.518 2.311 sum -3.320 -0.301 -27.360 27.563 Atomic orbital electron populations 1.21748 0.95097 1.02220 1.01731 1.21155 0.96408 0.92360 1.02888 1.22487 0.90964 0.99329 1.02331 0.89483 1.23207 0.99356 1.03515 0.89852 1.22341 0.98287 0.98061 1.02965 0.83502 1.20380 0.82201 0.86022 0.79369 1.90689 1.55313 1.50877 1.50605 1.45637 1.06815 1.28161 1.54820 1.21460 0.94047 0.88911 0.95447 1.21641 0.89141 0.88114 0.96135 1.45379 1.53613 1.29923 1.05783 1.20041 0.78699 0.86250 0.82765 1.90713 1.42767 1.42979 1.66663 1.23365 1.05198 0.99723 0.99644 1.85666 1.75627 1.32315 0.99199 1.23166 1.41853 1.07905 0.96397 0.89796 1.26153 0.95687 1.01667 0.95771 1.70182 1.42559 1.38742 1.03437 0.85003 0.78917 0.77032 0.77043 1.18473 1.20551 1.18582 1.23297 0.99774 0.95907 0.99673 1.22826 0.96813 1.00826 0.95964 1.23178 0.98284 1.01337 0.92006 0.91972 0.91511 0.93942 0.89394 0.92094 0.88983 0.84569 0.74752 0.90437 0.95098 0.74162 0.87421 0.87104 0.92040 0.88800 0.93511 0.89868 0.89289 0.87740 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.87 71.98 0.71 -1.33 16 2 C -0.09 -1.25 6.22 30.60 0.19 -1.06 16 3 C -0.13 -2.37 5.25 -10.77 -0.06 -2.43 16 4 H 0.09 2.11 7.60 -2.39 -0.02 2.09 16 5 C -0.12 -1.54 9.88 30.62 0.30 -1.23 16 6 C -0.20 -3.38 5.91 -11.54 -0.07 -3.44 16 7 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 8 C 0.53 13.73 7.61 87.66 0.67 14.40 16 9 O -0.59 -21.63 16.26 -3.04 -0.05 -21.68 16 10 N -0.70 -14.68 5.43 -463.06 -2.51 -17.19 16 11 C 0.13 3.28 4.99 86.38 0.43 3.71 16 12 C 0.14 2.74 0.50 4.13 0.00 2.74 16 13 N -0.69 -15.27 5.15 -420.55 -2.16 -17.44 16 14 C 0.54 18.96 7.37 87.66 0.65 19.60 16 15 O -0.55 -25.31 13.71 -3.03 -0.04 -25.35 16 16 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 17 S -0.16 -8.65 20.57 -56.49 -1.16 -9.81 16 18 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 22 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 C -0.15 -3.24 6.97 31.18 0.22 -3.02 16 27 C -0.13 -1.70 8.00 31.18 0.25 -1.45 16 28 C -0.11 -1.14 7.16 31.12 0.22 -0.91 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.81 7.88 -2.39 -0.02 0.80 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.14 0.86 8.03 -2.39 -0.02 0.84 16 36 H 0.42 5.57 8.39 -92.71 -0.78 4.79 16 37 H 0.08 1.96 8.06 -2.38 -0.02 1.94 16 38 H 0.03 1.15 6.91 -2.39 -0.02 1.14 16 39 H 0.42 5.82 8.66 -92.71 -0.80 5.02 16 40 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 41 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 44 H 0.05 1.39 7.27 -2.38 -0.02 1.38 16 45 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 0.53 8.09 -2.39 -0.02 0.51 16 48 H 0.11 0.93 8.10 -2.39 -0.02 0.91 16 Total: -1.00 -86.48 410.65 0.83 -85.65 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.61 Total: 24.89 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.06 Total: -8.22 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -4.39 Total: -91.06 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.09 Total: -47.03 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -86.48 0.83 -85.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064633247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.326 kcal (2) G-P(sol) polarization free energy of solvation -86.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds