Wall clock time and date at job start Sat Apr 11 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47488 * 2 1 4 4 H 1.09007 * 115.54781 * 29.32835 * 3 2 1 5 5 C 1.53075 * 117.51505 * 243.61081 * 3 2 1 6 6 C 1.52991 * 117.50146 * 174.99573 * 3 2 1 7 7 H 1.08997 * 117.49938 * 0.02562 * 6 3 2 8 8 C 1.50701 * 117.50240 * 215.00344 * 6 3 2 9 9 O 1.21283 * 119.99632 * 0.08474 * 8 6 3 10 10 N 1.34773 * 120.00159 * 180.08994 * 8 6 3 11 11 C 1.46505 * 119.99955 * 179.97438 * 10 8 6 12 12 H 1.09002 * 109.49846 * 324.99851 * 11 10 8 13 13 C 1.53039 * 109.49552 * 204.93470 * 11 10 8 14 14 C 1.53049 * 109.53353 * 178.65166 * 13 11 10 15 15 C 1.53187 * 109.31497 * 61.36666 * 14 13 11 16 16 N 1.46931 * 108.77274 * 305.36469 * 15 14 13 17 17 C 1.34780 * 120.62702 * 233.58083 * 16 15 14 18 18 O 1.21281 * 119.99932 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99912 * 0.02562 * 17 16 15 20 20 S 1.81002 * 109.46912 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00045 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00262 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99857 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00213 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99787 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47228 * 60.00051 * 25 23 21 27 27 H 1.48508 * 109.47266 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47462 * 299.99881 * 25 23 21 29 29 C 1.46925 * 118.74018 * 53.60848 * 16 15 14 30 30 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46709 * 300.00168 * 1 2 3 32 32 H 1.08995 * 109.46728 * 60.00053 * 1 2 3 33 33 H 1.08995 * 109.47263 * 239.99352 * 2 1 3 34 34 H 1.09009 * 109.46964 * 119.99842 * 2 1 3 35 35 H 1.08996 * 117.51002 * 145.04291 * 5 3 2 36 36 H 1.08992 * 117.49005 * 0.02562 * 5 3 2 37 37 H 0.96996 * 120.00345 * 359.97438 * 10 8 6 38 38 H 1.08998 * 109.46238 * 298.67019 * 13 11 10 39 39 H 1.08995 * 109.46216 * 58.64870 * 13 11 10 40 40 H 1.09006 * 109.49335 * 181.31393 * 14 13 11 41 41 H 1.08993 * 109.49783 * 301.37968 * 14 13 11 42 42 H 1.09002 * 109.58909 * 65.14881 * 15 14 13 43 43 H 1.08993 * 109.58933 * 185.43112 * 15 14 13 44 44 H 1.08997 * 109.46970 * 299.98784 * 19 17 16 45 45 H 1.08998 * 109.47438 * 59.99401 * 19 17 16 46 46 H 0.97006 * 119.99886 * 179.97438 * 24 23 21 47 47 H 1.09005 * 109.58300 * 186.60199 * 29 16 15 48 48 H 1.08998 * 109.58651 * 66.18140 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8448 1.9080 -1.2161 6 6 3.5502 1.6578 0.1184 7 1 4.1803 0.7719 0.1958 8 6 4.0229 2.8616 0.8920 9 8 3.2159 3.6153 1.3936 10 7 5.3424 3.1007 1.0262 11 6 5.8020 4.2714 1.7778 12 1 5.1092 5.0984 1.6224 13 6 7.1962 4.6748 1.2926 14 6 7.6631 5.9178 2.0537 15 6 7.7462 5.5949 3.5489 16 7 6.4480 5.0684 3.9918 17 6 5.8054 5.6191 5.0407 18 8 4.7340 5.1757 5.3964 19 6 6.4176 6.7866 5.7710 20 16 5.3226 7.2963 7.1190 21 6 6.2559 8.6360 7.7814 22 1 7.2040 8.9043 7.3393 23 6 5.7730 9.3459 8.8720 24 7 4.6177 9.0186 9.4111 25 14 6.7628 10.7658 9.5746 26 1 6.9536 11.8019 8.5280 27 1 6.0341 11.3549 10.7267 28 1 8.0873 10.2697 10.0274 29 6 5.8639 3.9298 3.2699 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.7225 2.9433 -1.5344 36 1 3.0101 1.1865 -2.0162 37 1 5.9879 2.4979 0.6253 38 1 7.8937 3.8564 1.4710 39 1 7.1598 4.8949 0.2257 40 1 8.6462 6.2183 1.6912 41 1 6.9532 6.7295 1.8952 42 1 8.5210 4.8472 3.7187 43 1 7.9847 6.5010 4.1057 44 1 7.3846 6.4930 6.1793 45 1 6.5526 7.6177 5.0789 46 1 4.2804 9.5146 10.1736 47 1 4.8579 3.7378 3.6430 48 1 6.4851 3.0463 3.4170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070453489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:38 Heat of formation + Delta-G solvation = -61.927347 kcal Electronic energy + Delta-G solvation = -26898.100990 eV Core-core repulsion = 23079.373137 eV Total energy + Delta-G solvation = -3818.727853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59016 -39.64112 -37.78897 -36.87696 -34.70450 -32.50855 -32.40570 -32.25096 -30.70767 -28.74373 -25.57169 -25.28158 -24.93759 -24.09684 -22.78748 -21.19337 -20.87886 -20.23214 -19.02561 -17.71307 -17.52906 -16.77196 -16.25948 -15.91305 -15.33199 -15.16361 -15.03969 -14.78337 -14.68155 -14.41324 -14.33320 -13.91974 -13.75910 -13.27500 -13.09171 -12.93000 -12.84277 -12.73902 -12.51552 -12.45998 -11.93379 -11.78924 -11.65984 -11.37887 -11.29591 -11.24102 -11.02235 -11.01691 -10.84117 -10.73917 -10.63770 -10.38400 -9.98439 -9.79800 -9.51316 -9.28250 -9.03681 -8.46101 -8.19150 -6.47179 -6.18739 -3.89427 2.27558 2.67090 3.05950 3.10386 3.24891 3.27978 3.30982 3.48371 3.63616 4.21938 4.23485 4.37993 4.41757 4.43820 4.58877 4.67767 4.77482 4.83348 4.86593 4.99082 5.00403 5.07990 5.12620 5.15952 5.24668 5.27905 5.32606 5.43295 5.52921 5.54152 5.56473 5.64268 5.67118 5.69756 5.76110 5.77699 5.81987 5.89644 5.97705 6.00494 6.05314 6.12972 6.19632 6.65644 7.25120 7.57370 7.61522 8.04296 8.37248 8.60347 9.25966 10.88586 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.002145 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.904561 B =13049.543171 C =14352.843300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.120 0.880 5 C -0.149 4.149 6 C -0.192 4.192 7 H 0.123 0.877 8 C 0.540 3.460 9 O -0.526 6.526 10 N -0.723 5.723 11 C 0.131 3.869 12 H 0.093 0.907 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.105 3.895 16 N -0.619 5.619 17 C 0.534 3.466 18 O -0.511 6.511 19 C -0.149 4.149 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C 0.106 3.894 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.098 0.902 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.971 -17.018 -24.815 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.138 0.862 5 C -0.187 4.187 6 C -0.213 4.213 7 H 0.141 0.859 8 C 0.326 3.674 9 O -0.402 6.402 10 N -0.374 5.374 11 C 0.026 3.974 12 H 0.111 0.889 13 C -0.162 4.162 14 C -0.171 4.171 15 C -0.018 4.018 16 N -0.356 5.356 17 C 0.322 3.678 18 O -0.384 6.384 19 C -0.300 4.300 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 C -0.019 4.019 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.631 -17.075 -23.745 29.366 hybrid contribution 2.457 1.118 -0.176 2.705 sum 5.088 -15.957 -23.921 29.202 Atomic orbital electron populations 1.21745 0.95053 1.01694 1.02323 1.21156 0.96451 0.93501 1.02089 1.22527 0.91294 0.98920 1.00812 0.86235 1.23114 1.02160 1.03164 0.90221 1.22296 0.98060 0.98803 1.02113 0.85927 1.19739 0.82243 0.85676 0.79759 1.90785 1.53716 1.48123 1.47536 1.45886 1.07077 1.28675 1.55776 1.21342 0.96331 0.88732 0.91026 0.88873 1.21789 0.95269 0.98774 1.00387 1.21900 1.02454 0.97760 0.95007 1.21752 0.84981 1.00229 0.94855 1.48034 1.21497 1.33945 1.32103 1.20372 0.84672 0.83589 0.79182 1.90715 1.20966 1.61993 1.64739 1.23549 1.05038 0.97912 1.03488 1.85463 1.26784 1.40515 1.30593 1.22816 1.08545 1.18244 1.18785 0.90998 1.24994 0.95276 0.97589 0.95750 1.70013 1.18060 1.39741 1.22414 0.86228 0.79650 0.81167 0.78458 1.19949 1.20820 1.19956 1.21824 1.01199 0.88344 0.90509 0.92592 0.92285 0.92528 0.91737 0.91323 0.88296 0.87824 0.76573 0.91145 0.91017 0.90010 0.90860 0.91401 0.88881 0.89256 0.89230 0.92133 0.88409 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.87 37.16 0.37 -0.60 16 2 C -0.09 -0.61 6.22 -26.73 -0.17 -0.78 16 3 C -0.12 -0.98 5.25 -90.59 -0.48 -1.45 16 4 H 0.12 1.29 7.60 -51.92 -0.39 0.90 16 5 C -0.15 -1.01 9.89 -26.69 -0.26 -1.28 16 6 C -0.19 -1.52 5.91 -91.77 -0.54 -2.06 16 7 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 8 C 0.54 6.15 7.58 -10.99 -0.08 6.07 16 9 O -0.53 -8.74 15.92 5.55 0.09 -8.65 16 10 N -0.72 -6.35 5.08 -53.69 -0.27 -6.62 16 11 C 0.13 1.41 2.60 -67.81 -0.18 1.24 16 12 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 13 C -0.12 -0.92 5.35 -26.69 -0.14 -1.06 16 14 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 15 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 16 N -0.62 -9.21 2.97 -172.77 -0.51 -9.72 16 17 C 0.53 10.75 7.72 -10.98 -0.08 10.66 16 18 O -0.51 -12.54 15.27 5.56 0.08 -12.46 16 19 C -0.15 -3.12 4.50 36.01 0.16 -2.95 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 25 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 C 0.11 1.43 6.01 -3.71 -0.02 1.41 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 34 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.48 8.03 -51.93 -0.42 0.07 16 37 H 0.40 2.11 8.60 -40.82 -0.35 1.76 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.02 5.95 -51.93 -0.31 0.71 16 44 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 45 H 0.09 1.72 7.70 -51.92 -0.40 1.32 16 46 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.10 1.72 7.01 -51.93 -0.36 1.36 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 404.32 15.07 6.09 6.09 Total: -1.00 -37.60 404.32 -10.50 -48.11 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.07 Total: 0.50 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.42 Total: -4.10 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.05 Total: -42.16 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.17 Total: -21.11 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.60 -10.50 -48.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070453489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.819 kcal (2) G-P(sol) polarization free energy of solvation -37.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds