Wall clock time and date at job start Sat Apr 11 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47246 * 2 1 4 4 H 1.08992 * 109.47634 * 298.86882 * 3 2 1 5 5 C 1.50703 * 109.46953 * 178.86770 * 3 2 1 6 6 H 1.08000 * 119.99896 * 323.66766 * 5 3 2 7 7 C 1.37875 * 119.99959 * 143.66084 * 5 3 2 8 8 N 1.31515 * 120.00224 * 173.88104 * 7 5 3 9 9 Si 1.86804 * 119.99895 * 353.88673 * 7 5 3 10 10 H 1.48506 * 109.46874 * 93.80960 * 9 7 5 11 11 H 1.48501 * 109.47400 * 213.80540 * 9 7 5 12 12 H 1.48496 * 109.47215 * 333.80738 * 9 7 5 13 13 N 1.46505 * 109.47194 * 58.87547 * 3 2 1 14 14 C 1.46499 * 120.00312 * 53.88631 * 13 3 2 15 15 C 1.52991 * 109.46943 * 99.02141 * 14 13 3 16 16 C 1.53010 * 109.46978 * 155.87549 * 15 14 13 17 17 C 1.52992 * 109.47417 * 275.87490 * 15 14 13 18 18 N 1.46902 * 109.47535 * 35.87884 * 15 14 13 19 19 S 1.65601 * 119.99475 * 233.89004 * 13 3 2 20 20 O 1.42102 * 106.40165 * 203.53467 * 19 13 3 21 21 O 1.42104 * 106.40482 * 336.45411 * 19 13 3 22 22 C 1.76204 * 107.21832 * 89.99657 * 19 13 3 23 23 C 1.38233 * 119.99807 * 269.72310 * 22 19 13 24 24 C 1.38239 * 119.99538 * 179.76639 * 23 22 19 25 25 C 1.38233 * 120.00286 * 0.51062 * 24 23 22 26 26 C 1.38240 * 119.99741 * 359.74011 * 25 24 23 27 27 C 1.38233 * 119.99927 * 0.02562 * 26 25 24 28 28 H 1.08991 * 109.47548 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46959 * 300.00060 * 1 2 3 30 30 H 1.08998 * 109.46708 * 59.99606 * 1 2 3 31 31 H 1.08999 * 109.46959 * 239.99940 * 2 1 3 32 32 H 1.08998 * 109.46708 * 120.00394 * 2 1 3 33 33 H 0.97000 * 120.00059 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46717 * 219.02504 * 14 13 3 35 35 H 1.09000 * 109.46850 * 339.01849 * 14 13 3 36 36 H 1.08999 * 109.46879 * 59.99806 * 16 15 14 37 37 H 1.08990 * 109.46973 * 180.02562 * 16 15 14 38 38 H 1.09003 * 109.46669 * 300.00396 * 16 15 14 39 39 H 1.09001 * 109.47384 * 77.87133 * 17 15 14 40 40 H 1.08999 * 109.47371 * 197.87438 * 17 15 14 41 41 H 1.09001 * 109.47375 * 317.86911 * 17 15 14 42 42 H 1.00900 * 111.00390 * 179.97438 * 18 15 14 43 43 H 1.00902 * 110.99302 * 303.95230 * 18 15 14 44 44 H 1.08003 * 120.00212 * 0.02562 * 23 22 19 45 45 H 1.08001 * 119.99648 * 180.23180 * 24 23 22 46 46 H 1.07993 * 120.00247 * 179.72467 * 25 24 23 47 47 H 1.08002 * 119.99916 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00039 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6935 1.9504 -0.8999 5 6 3.5468 1.4425 0.0281 6 1 4.0763 0.6926 0.5971 7 6 4.2494 2.3996 -0.6728 8 7 5.5569 2.4749 -0.5531 9 14 3.3440 3.5897 -1.7924 10 1 3.0361 4.8355 -1.0450 11 1 4.1969 3.9135 -2.9641 12 1 2.0792 2.9664 -2.2581 13 7 1.5297 2.1409 1.1824 14 6 1.7452 1.5759 2.5168 15 6 2.9364 2.2714 3.1787 16 6 2.8132 2.1569 4.6995 17 6 4.2351 1.6050 2.7206 18 7 2.9513 3.6891 2.7942 19 16 0.7091 3.5690 1.0105 20 8 0.8337 4.2549 2.2487 21 8 1.1242 4.1235 -0.2304 22 6 -0.9981 3.1713 0.8315 23 6 -1.5298 2.9579 -0.4265 24 6 -2.8681 2.6412 -0.5665 25 6 -3.6770 2.5482 0.5506 26 6 -3.1463 2.7667 1.8083 27 6 -1.8070 3.0787 1.9486 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 6.0511 3.1485 -1.0459 34 1 0.8527 1.7273 3.1239 35 1 1.9494 0.5087 2.4308 36 1 2.8021 1.1050 4.9849 37 1 3.6615 2.6527 5.1711 38 1 1.8878 2.6316 5.0258 39 1 4.4859 1.9492 1.7173 40 1 5.0402 1.8681 3.4068 41 1 4.1047 0.5229 2.7116 42 1 3.7293 4.1710 3.2193 43 1 2.9671 3.7913 1.7905 44 1 -0.8988 3.0345 -1.2996 45 1 -3.2828 2.4708 -1.5491 46 1 -4.7235 2.3051 0.4409 47 1 -3.7783 2.6944 2.6811 48 1 -1.3924 3.2498 2.9311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:55 Heat of formation + Delta-G solvation = -15.332604 kcal Electronic energy + Delta-G solvation = -31341.953078 eV Core-core repulsion = 27525.245724 eV Total energy + Delta-G solvation = -3816.707354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.93791 -38.12565 -36.51781 -35.13041 -34.76679 -32.54397 -31.22656 -31.07581 -30.87964 -28.85120 -27.89654 -26.36309 -24.76017 -23.08384 -22.95636 -22.59494 -20.01663 -19.13848 -18.33513 -17.42815 -17.16689 -16.65724 -15.96860 -15.49254 -15.04831 -14.88177 -14.45157 -14.17715 -13.99358 -13.77936 -13.46713 -13.35177 -12.94976 -12.76198 -12.71287 -12.36233 -12.22544 -12.06479 -11.99272 -11.69653 -11.39976 -11.26189 -11.24311 -11.18959 -11.11482 -10.98669 -10.87009 -10.48042 -10.27154 -10.23093 -10.07164 -9.93919 -9.85614 -9.38841 -9.22880 -9.02471 -8.93215 -8.46504 -7.97302 -7.47298 -6.25482 -4.25920 0.90746 1.28854 1.38176 3.38713 3.57398 3.60542 3.80354 3.97161 4.46507 4.62167 4.75799 4.90955 5.02563 5.10649 5.20273 5.27547 5.39961 5.56387 5.60856 5.70097 5.73061 5.77657 5.80118 5.83842 5.98062 6.02211 6.07250 6.21592 6.29109 6.29682 6.37089 6.39384 6.43754 6.49112 6.52883 6.57366 6.69100 6.72583 6.83748 6.86857 6.93267 6.98671 7.27033 7.51772 7.70088 7.85487 8.08828 8.26876 8.33308 8.76539 9.34610 10.79670 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.006862 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.470273 B = 4079.488951 C = 4851.377237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.216 3.784 4 H 0.071 0.929 5 C -0.504 4.504 6 H 0.091 0.909 7 C 0.074 3.926 8 N -0.875 5.875 9 Si 0.889 3.111 10 H -0.250 1.250 11 H -0.308 1.308 12 H -0.263 1.263 13 N -0.965 5.965 14 C 0.153 3.847 15 C 0.101 3.899 16 C -0.133 4.133 17 C -0.200 4.200 18 N -0.807 5.807 19 S 2.634 3.366 20 O -0.922 6.922 21 O -0.962 6.962 22 C -0.670 4.670 23 C -0.022 4.022 24 C -0.144 4.144 25 C -0.078 4.078 26 C -0.146 4.146 27 C -0.025 4.025 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.268 0.732 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.135 0.865 40 H 0.024 0.976 41 H 0.042 0.958 42 H 0.327 0.673 43 H 0.328 0.672 44 H 0.135 0.865 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 -2.740 4.451 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.116 3.884 4 H 0.088 0.912 5 C -0.546 4.546 6 H 0.109 0.891 7 C -0.133 4.133 8 N -0.512 5.512 9 Si 0.720 3.280 10 H -0.175 1.175 11 H -0.236 1.236 12 H -0.189 1.189 13 N -0.805 5.805 14 C 0.026 3.974 15 C 0.007 3.993 16 C -0.191 4.191 17 C -0.258 4.258 18 N -0.339 5.339 19 S 2.723 3.277 20 O -0.910 6.910 21 O -0.953 6.953 22 C -0.751 4.751 23 C -0.041 4.041 24 C -0.163 4.163 25 C -0.097 4.097 26 C -0.165 4.165 27 C -0.044 4.044 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.153 0.847 40 H 0.043 0.957 41 H 0.061 0.939 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.594 -1.761 4.764 14.512 hybrid contribution -0.152 -0.113 -1.066 1.083 sum -13.747 -1.874 3.698 14.358 Atomic orbital electron populations 1.21924 0.97947 1.00192 1.01153 1.21768 0.93269 0.98866 1.01686 1.19470 0.95178 0.89722 0.84073 0.91158 1.21359 0.88679 1.14320 1.30272 0.89093 1.25205 0.94911 0.96970 0.96172 1.69932 1.06633 1.34225 1.40367 0.86591 0.77735 0.83424 0.80245 1.17516 1.23648 1.18883 1.58865 1.66148 1.42728 1.12736 1.21120 0.95980 0.98257 0.82007 1.21043 0.95552 0.89210 0.93528 1.21791 1.01704 1.00380 0.95226 1.23390 0.95713 1.00193 1.06476 1.59487 1.49672 1.10785 1.13990 1.04514 0.73034 0.75439 0.74683 1.93685 1.84147 1.70878 1.42325 1.93536 1.79623 1.76669 1.45431 1.31867 1.28850 1.15322 0.99105 1.20965 0.95538 0.91518 0.96049 1.21248 0.94211 1.01969 0.98874 1.21340 0.99465 0.95983 0.92881 1.21243 0.95661 1.02053 0.97534 1.20933 0.93501 0.92192 0.97731 0.94002 0.93046 0.93681 0.91703 0.92322 0.92220 0.92772 0.90066 0.93106 0.93305 0.92341 0.84747 0.95727 0.93930 0.86146 0.85693 0.84762 0.85660 0.85922 0.85678 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.58 37.16 0.36 -1.98 16 2 C -0.12 -2.02 5.17 -26.73 -0.14 -2.16 16 3 C 0.22 4.42 1.88 -69.08 -0.13 4.29 16 4 H 0.07 1.55 3.98 -51.93 -0.21 1.34 16 5 C -0.50 -11.93 5.92 -34.44 -0.20 -12.14 16 6 H 0.09 2.28 6.16 -52.49 -0.32 1.95 16 7 C 0.07 1.92 5.09 -17.82 -0.09 1.83 16 8 N -0.88 -23.84 13.64 55.43 0.76 -23.08 16 9 Si 0.89 22.25 24.10 -169.99 -4.10 18.15 16 10 H -0.25 -6.52 6.24 56.52 0.35 -6.17 16 11 H -0.31 -7.80 7.11 56.52 0.40 -7.39 16 12 H -0.26 -6.34 5.91 56.52 0.33 -6.00 16 13 N -0.96 -18.30 1.18 -108.54 -0.13 -18.43 16 14 C 0.15 2.63 4.44 -4.05 -0.02 2.61 16 15 C 0.10 1.83 1.09 -131.60 -0.14 1.68 16 16 C -0.13 -2.03 8.57 37.16 0.32 -1.71 16 17 C -0.20 -3.94 7.26 37.15 0.27 -3.67 16 18 N -0.81 -16.20 5.72 0.74 0.00 -16.19 16 19 S 2.63 52.20 4.29 -107.50 -0.46 51.74 16 20 O -0.92 -19.26 13.42 -57.17 -0.77 -20.03 16 21 O -0.96 -21.97 10.93 -57.17 -0.63 -22.59 16 22 C -0.67 -11.15 5.24 -39.58 -0.21 -11.36 16 23 C -0.02 -0.34 8.71 -39.58 -0.34 -0.68 16 24 C -0.14 -1.82 10.05 -39.58 -0.40 -2.22 16 25 C -0.08 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.15 -1.76 10.05 -39.58 -0.40 -2.16 16 27 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.77 6.72 -51.93 -0.35 0.42 16 30 H 0.04 0.67 7.48 -51.93 -0.39 0.29 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.98 6.51 -51.93 -0.34 0.65 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 35 H 0.08 1.32 5.65 -51.93 -0.29 1.03 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 39 H 0.13 3.12 3.98 -51.93 -0.21 2.92 16 40 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 41 H 0.04 0.80 7.39 -51.93 -0.38 0.42 16 42 H 0.33 6.19 9.00 -39.29 -0.35 5.83 16 43 H 0.33 7.34 6.37 -39.26 -0.25 7.09 16 44 H 0.13 2.13 7.61 -52.48 -0.40 1.73 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 48 H 0.14 1.88 7.62 -52.49 -0.40 1.48 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -28.74 362.65 -9.10 -37.85 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -7.35 Total: 16.80 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -1.90 Total: -29.68 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.63 Total: -57.70 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.39 Total: -42.63 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.10 Total: 18.15 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.46 Total: 51.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.74 -9.10 -37.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.517 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds