Wall clock time and date at job start Sat Apr 11 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47246 * 2 1 4 4 H 1.08992 * 109.47634 * 298.86882 * 3 2 1 5 5 C 1.50703 * 109.46953 * 178.86770 * 3 2 1 6 6 H 1.08000 * 119.99896 * 323.66766 * 5 3 2 7 7 C 1.37875 * 119.99959 * 143.66084 * 5 3 2 8 8 N 1.31515 * 120.00224 * 173.88104 * 7 5 3 9 9 Si 1.86804 * 119.99895 * 353.88673 * 7 5 3 10 10 H 1.48506 * 109.46874 * 93.80960 * 9 7 5 11 11 H 1.48501 * 109.47400 * 213.80540 * 9 7 5 12 12 H 1.48496 * 109.47215 * 333.80738 * 9 7 5 13 13 N 1.46505 * 109.47194 * 58.87547 * 3 2 1 14 14 C 1.46499 * 120.00312 * 53.88631 * 13 3 2 15 15 C 1.52991 * 109.46943 * 99.02141 * 14 13 3 16 16 C 1.53010 * 109.46978 * 155.87549 * 15 14 13 17 17 C 1.52992 * 109.47417 * 275.87490 * 15 14 13 18 18 N 1.46902 * 109.47535 * 35.87884 * 15 14 13 19 19 S 1.65601 * 119.99475 * 233.89004 * 13 3 2 20 20 O 1.42102 * 106.40165 * 203.53467 * 19 13 3 21 21 O 1.42104 * 106.40482 * 336.45411 * 19 13 3 22 22 C 1.76204 * 107.21832 * 89.99657 * 19 13 3 23 23 C 1.38233 * 119.99807 * 269.72310 * 22 19 13 24 24 C 1.38239 * 119.99538 * 179.76639 * 23 22 19 25 25 C 1.38233 * 120.00286 * 0.51062 * 24 23 22 26 26 C 1.38240 * 119.99741 * 359.74011 * 25 24 23 27 27 C 1.38233 * 119.99927 * 0.02562 * 26 25 24 28 28 H 1.08991 * 109.47548 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46959 * 300.00060 * 1 2 3 30 30 H 1.08998 * 109.46708 * 59.99606 * 1 2 3 31 31 H 1.08999 * 109.46959 * 239.99940 * 2 1 3 32 32 H 1.08998 * 109.46708 * 120.00394 * 2 1 3 33 33 H 0.97000 * 120.00059 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46717 * 219.02504 * 14 13 3 35 35 H 1.09000 * 109.46850 * 339.01849 * 14 13 3 36 36 H 1.08999 * 109.46879 * 59.99806 * 16 15 14 37 37 H 1.08990 * 109.46973 * 180.02562 * 16 15 14 38 38 H 1.09003 * 109.46669 * 300.00396 * 16 15 14 39 39 H 1.09001 * 109.47384 * 77.87133 * 17 15 14 40 40 H 1.08999 * 109.47371 * 197.87438 * 17 15 14 41 41 H 1.09001 * 109.47375 * 317.86911 * 17 15 14 42 42 H 1.00900 * 111.00390 * 179.97438 * 18 15 14 43 43 H 1.00902 * 110.99302 * 303.95230 * 18 15 14 44 44 H 1.08003 * 120.00212 * 0.02562 * 23 22 19 45 45 H 1.08001 * 119.99648 * 180.23180 * 24 23 22 46 46 H 1.07993 * 120.00247 * 179.72467 * 25 24 23 47 47 H 1.08002 * 119.99916 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00039 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6935 1.9504 -0.8999 5 6 3.5468 1.4425 0.0281 6 1 4.0763 0.6926 0.5971 7 6 4.2494 2.3996 -0.6728 8 7 5.5569 2.4749 -0.5531 9 14 3.3440 3.5897 -1.7924 10 1 3.0361 4.8355 -1.0450 11 1 4.1969 3.9135 -2.9641 12 1 2.0792 2.9664 -2.2581 13 7 1.5297 2.1409 1.1824 14 6 1.7452 1.5759 2.5168 15 6 2.9364 2.2714 3.1787 16 6 2.8132 2.1569 4.6995 17 6 4.2351 1.6050 2.7206 18 7 2.9513 3.6891 2.7942 19 16 0.7091 3.5690 1.0105 20 8 0.8337 4.2549 2.2487 21 8 1.1242 4.1235 -0.2304 22 6 -0.9981 3.1713 0.8315 23 6 -1.5298 2.9579 -0.4265 24 6 -2.8681 2.6412 -0.5665 25 6 -3.6770 2.5482 0.5506 26 6 -3.1463 2.7667 1.8083 27 6 -1.8070 3.0787 1.9486 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 6.0511 3.1485 -1.0459 34 1 0.8527 1.7273 3.1239 35 1 1.9494 0.5087 2.4308 36 1 2.8021 1.1050 4.9849 37 1 3.6615 2.6527 5.1711 38 1 1.8878 2.6316 5.0258 39 1 4.4859 1.9492 1.7173 40 1 5.0402 1.8681 3.4068 41 1 4.1047 0.5229 2.7116 42 1 3.7293 4.1710 3.2193 43 1 2.9671 3.7913 1.7905 44 1 -0.8988 3.0345 -1.2996 45 1 -3.2828 2.4708 -1.5491 46 1 -4.7235 2.3051 0.4409 47 1 -3.7783 2.6944 2.6811 48 1 -1.3924 3.2498 2.9311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:54 Heat of formation + Delta-G solvation = -34.209904 kcal Electronic energy + Delta-G solvation = -31342.771659 eV Core-core repulsion = 27525.245724 eV Total energy + Delta-G solvation = -3817.525935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.96737 -39.64411 -38.15617 -36.72452 -36.34054 -34.44488 -32.58839 -32.16596 -31.91899 -30.35038 -29.58070 -27.77365 -26.28732 -24.68424 -24.05815 -23.61736 -21.53646 -20.62556 -19.67569 -19.09877 -18.75803 -18.25321 -17.18167 -17.03454 -16.32709 -16.23288 -16.10131 -15.45785 -15.30848 -15.29647 -14.78615 -14.71709 -14.41810 -14.27183 -14.00901 -13.93500 -13.71980 -13.56766 -13.37465 -13.21521 -12.88603 -12.78509 -12.68153 -12.60470 -12.46404 -12.34540 -12.16855 -12.14058 -11.86386 -11.67908 -11.62427 -11.53205 -11.38519 -11.18163 -10.77976 -10.43950 -10.27675 -9.95833 -9.53364 -9.05451 -8.26743 -6.23448 -0.36581 -0.03081 0.37044 1.38648 1.54741 1.76000 2.28729 2.43704 2.68736 3.09279 3.21673 3.55278 3.76034 3.95843 4.01971 4.13835 4.17844 4.18338 4.33715 4.45100 4.47114 4.52249 4.54451 4.65750 4.71642 4.77391 4.90238 4.94354 5.01534 5.02716 5.16999 5.17643 5.21544 5.24236 5.26434 5.29333 5.33493 5.34911 5.42497 5.46050 5.59567 5.66623 5.74746 5.95385 6.08499 6.23005 6.40617 6.47769 6.68161 6.81869 7.38852 8.82340 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.006862 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.470273 B = 4079.488951 C = 4851.377237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.220 3.780 4 H 0.053 0.947 5 C -0.482 4.482 6 H 0.078 0.922 7 C 0.043 3.957 8 N -0.916 5.916 9 Si 0.913 3.087 10 H -0.273 1.273 11 H -0.319 1.319 12 H -0.253 1.253 13 N -0.966 5.966 14 C 0.148 3.852 15 C 0.096 3.904 16 C -0.126 4.126 17 C -0.193 4.193 18 N -0.812 5.812 19 S 2.644 3.356 20 O -0.940 6.940 21 O -1.003 7.003 22 C -0.681 4.681 23 C -0.043 4.043 24 C -0.142 4.142 25 C -0.064 4.064 26 C -0.139 4.139 27 C -0.037 4.037 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.025 0.975 41 H 0.048 0.952 42 H 0.328 0.672 43 H 0.311 0.689 44 H 0.118 0.882 45 H 0.152 0.848 46 H 0.165 0.835 47 H 0.161 0.839 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 -4.576 6.087 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.118 3.882 4 H 0.071 0.929 5 C -0.523 4.523 6 H 0.095 0.905 7 C -0.158 4.158 8 N -0.556 5.556 9 Si 0.746 3.254 10 H -0.200 1.200 11 H -0.248 1.248 12 H -0.179 1.179 13 N -0.805 5.805 14 C 0.023 3.977 15 C 0.002 3.998 16 C -0.184 4.184 17 C -0.252 4.252 18 N -0.342 5.342 19 S 2.738 3.262 20 O -0.929 6.929 21 O -0.993 6.993 22 C -0.768 4.768 23 C -0.063 4.063 24 C -0.161 4.161 25 C -0.082 4.082 26 C -0.158 4.158 27 C -0.056 4.056 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.140 0.860 43 H 0.124 0.876 44 H 0.136 0.864 45 H 0.170 0.830 46 H 0.183 0.817 47 H 0.179 0.821 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.969 -3.608 6.408 19.416 hybrid contribution 0.962 0.454 -1.483 1.825 sum -17.008 -3.154 4.925 17.985 Atomic orbital electron populations 1.21843 0.95647 1.01745 1.01239 1.21681 0.95309 0.96175 1.02005 1.19316 0.93157 0.91752 0.83997 0.92885 1.21520 0.90403 1.12456 1.27943 0.90458 1.25460 0.94930 0.97982 0.97447 1.69994 1.07337 1.35623 1.42617 0.86245 0.77500 0.82332 0.79369 1.20017 1.24850 1.17888 1.58166 1.67196 1.42220 1.12960 1.21343 0.96620 0.98715 0.81065 1.21230 0.94982 0.87900 0.95688 1.21733 1.02006 1.02055 0.92582 1.23242 0.96910 1.00536 1.04473 1.59589 1.49727 1.12240 1.12666 1.03461 0.74269 0.74933 0.73495 1.93654 1.85301 1.71251 1.42668 1.93457 1.81311 1.77570 1.46966 1.31111 1.26234 1.18772 1.00731 1.20993 0.97150 0.93097 0.95038 1.21587 0.92842 1.00677 1.00991 1.21869 1.01225 0.93287 0.91841 1.21669 0.94629 1.00109 0.99362 1.21116 0.94801 0.92675 0.97028 0.91594 0.92702 0.93939 0.91949 0.91479 0.92919 0.90408 0.88735 0.90777 0.93137 0.91901 0.88228 0.95634 0.93335 0.85984 0.87608 0.86387 0.82990 0.81707 0.82131 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.58 71.98 0.69 -3.34 16 2 C -0.11 -3.72 5.17 30.59 0.16 -3.57 16 3 C 0.22 9.02 1.88 44.24 0.08 9.11 16 4 H 0.05 2.39 3.98 -2.39 -0.01 2.38 16 5 C -0.48 -23.42 5.92 25.60 0.15 -23.27 16 6 H 0.08 3.96 6.16 -2.91 -0.02 3.94 16 7 C 0.04 2.35 5.09 84.65 0.43 2.78 16 8 N -0.92 -52.65 13.64 21.45 0.29 -52.36 16 9 Si 0.91 47.88 24.10 68.60 1.65 49.54 16 10 H -0.27 -15.23 6.24 99.48 0.62 -14.61 16 11 H -0.32 -16.95 7.11 99.48 0.71 -16.24 16 12 H -0.25 -12.64 5.91 99.48 0.59 -12.05 16 13 N -0.97 -36.22 1.18 -497.31 -0.59 -36.80 16 14 C 0.15 4.85 4.44 86.38 0.38 5.24 16 15 C 0.10 3.39 1.09 3.52 0.00 3.39 16 16 C -0.13 -3.55 8.57 71.99 0.62 -2.93 16 17 C -0.19 -7.64 7.26 71.98 0.52 -7.12 16 18 N -0.81 -33.00 5.72 -151.57 -0.87 -33.87 16 19 S 2.64 105.22 4.29 -56.49 -0.24 104.98 16 20 O -0.94 -39.30 13.42 -128.00 -1.72 -41.02 16 21 O -1.00 -47.47 10.93 -128.00 -1.40 -48.87 16 22 C -0.68 -21.57 5.24 22.27 0.12 -21.45 16 23 C -0.04 -1.27 8.71 22.27 0.19 -1.08 16 24 C -0.14 -3.02 10.05 22.27 0.22 -2.80 16 25 C -0.06 -1.09 10.05 22.27 0.22 -0.86 16 26 C -0.14 -2.62 10.05 22.27 0.22 -2.40 16 27 C -0.04 -0.96 9.52 22.27 0.21 -0.75 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.46 6.72 -2.39 -0.02 1.45 16 30 H 0.04 1.18 7.48 -2.39 -0.02 1.16 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.10 6.51 -2.39 -0.02 2.09 16 33 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.08 2.19 7.86 -2.39 -0.02 2.18 16 35 H 0.09 2.84 5.65 -2.39 -0.01 2.83 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.73 8.12 -2.39 -0.02 1.71 16 39 H 0.10 4.77 3.98 -2.39 -0.01 4.76 16 40 H 0.02 0.95 8.01 -2.39 -0.02 0.94 16 41 H 0.05 1.80 7.39 -2.39 -0.02 1.78 16 42 H 0.33 12.78 9.00 -89.69 -0.81 11.97 16 43 H 0.31 14.45 6.37 -89.71 -0.57 13.88 16 44 H 0.12 3.76 7.61 -2.91 -0.02 3.74 16 45 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 47 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 48 H 0.14 3.44 7.62 -2.91 -0.02 3.42 16 Total: -1.00 -66.59 362.65 0.77 -65.82 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: -0.60 Total: 41.61 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 4.23 Total: -49.05 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -1.16 Total: -123.02 kcal Atomic # 8 Polarization: -86.77 SS G_CDS: -3.12 Total: -89.88 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.65 Total: 49.54 kcal Atomic # 16 Polarization: 105.22 SS G_CDS: -0.24 Total: 104.98 kcal Total: -66.59 0.77 -65.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.614 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds