Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.08999 * 109.47032 * 54.15713 * 3 2 1 5 5 C 1.50701 * 109.47143 * 174.15410 * 3 2 1 6 6 H 1.08001 * 120.00277 * 117.30062 * 5 3 2 7 7 C 1.37877 * 120.00312 * 297.30523 * 5 3 2 8 8 N 1.31511 * 119.99681 * 355.37822 * 7 5 3 9 9 Si 1.86802 * 120.00323 * 175.38156 * 7 5 3 10 10 H 1.48503 * 109.46644 * 270.00074 * 9 7 5 11 11 H 1.48494 * 109.46932 * 29.99647 * 9 7 5 12 12 H 1.48497 * 109.47031 * 149.99838 * 9 7 5 13 13 N 1.46501 * 109.47196 * 294.15398 * 3 2 1 14 14 C 1.46503 * 119.99883 * 316.59357 * 13 3 2 15 15 C 1.53001 * 109.47103 * 294.54691 * 14 13 3 16 16 C 1.52997 * 109.46972 * 186.90528 * 15 14 13 17 17 C 1.52998 * 109.46860 * 306.90129 * 15 14 13 18 18 N 1.46900 * 109.47179 * 66.90062 * 15 14 13 19 19 S 1.65599 * 120.00047 * 136.59138 * 13 3 2 20 20 O 1.42103 * 106.40347 * 203.54219 * 19 13 3 21 21 O 1.42100 * 106.39919 * 336.46107 * 19 13 3 22 22 C 1.76195 * 107.21732 * 90.00121 * 19 13 3 23 23 C 1.38237 * 120.00369 * 269.72867 * 22 19 13 24 24 C 1.38235 * 120.00091 * 179.76759 * 23 22 19 25 25 C 1.38234 * 120.00126 * 0.50609 * 24 23 22 26 26 C 1.38234 * 119.99823 * 359.74365 * 25 24 23 27 27 C 1.38234 * 119.99986 * 90.00234 * 22 19 13 28 28 H 1.08995 * 109.46990 * 185.00652 * 1 2 3 29 29 H 1.09001 * 109.46999 * 305.00595 * 1 2 3 30 30 H 1.08995 * 109.47396 * 65.00475 * 1 2 3 31 31 H 1.09002 * 109.47097 * 239.99743 * 2 1 3 32 32 H 1.09002 * 109.47178 * 119.99769 * 2 1 3 33 33 H 0.96997 * 120.00226 * 355.53045 * 8 7 5 34 34 H 1.09006 * 109.46985 * 54.54419 * 14 13 3 35 35 H 1.08994 * 109.46767 * 174.54407 * 14 13 3 36 36 H 1.08998 * 109.47431 * 59.99403 * 16 15 14 37 37 H 1.08996 * 109.47172 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.46928 * 299.99395 * 16 15 14 39 39 H 1.09002 * 109.47065 * 60.43554 * 17 15 14 40 40 H 1.08998 * 109.46879 * 180.42799 * 17 15 14 41 41 H 1.09004 * 109.47507 * 300.43034 * 17 15 14 42 42 H 1.00897 * 110.99369 * 60.00394 * 18 15 14 43 43 H 1.00902 * 110.99887 * 183.95161 * 18 15 14 44 44 H 1.08002 * 119.99645 * 359.97438 * 23 22 19 45 45 H 1.08001 * 119.99479 * 180.22559 * 24 23 22 46 46 H 1.08000 * 120.00152 * 179.72837 * 25 24 23 47 47 H 1.07998 * 120.00382 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00103 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9856 0.8330 5 6 3.5400 1.4450 0.1447 6 1 4.1581 1.8464 -0.6448 7 6 4.1235 0.9347 1.2850 8 7 3.3704 0.5296 2.2841 9 14 5.9837 0.8189 1.4108 10 1 6.4339 -0.4972 0.8907 11 1 6.6025 1.9056 0.6100 12 1 6.3932 0.9562 2.8315 13 7 1.6699 2.0913 -1.2603 14 6 1.8267 1.3731 -2.5275 15 6 3.3125 1.1176 -2.7885 16 6 3.4897 0.5235 -4.1872 17 6 4.0812 2.4370 -2.6936 18 7 3.8306 0.1759 -1.7872 19 16 1.0743 3.6365 -1.2524 20 8 0.3190 3.7815 -2.4473 21 8 0.5291 3.8497 0.0424 22 6 2.4508 4.7267 -1.3985 23 6 3.0879 5.1916 -0.2632 24 6 4.1708 6.0431 -0.3780 25 6 4.6101 6.4381 -1.6278 26 6 3.9697 5.9773 -2.7629 27 6 2.8900 5.1217 -2.6483 28 1 -0.3633 -1.0237 0.0897 29 1 -0.3633 0.5895 0.8418 30 1 -0.3634 0.4342 -0.9314 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4086 0.6492 2.2460 34 1 1.2983 0.4212 -2.4735 35 1 1.4132 1.9727 -3.3384 36 1 3.1052 1.2222 -4.9302 37 1 4.5482 0.3419 -4.3733 38 1 2.9421 -0.4165 -4.2548 39 1 3.9611 2.8564 -1.6947 40 1 5.1385 2.2562 -2.8870 41 1 3.6916 3.1384 -3.4315 42 1 3.3387 -0.7040 -1.8297 43 1 4.8243 0.0403 -1.8984 44 1 2.7417 4.8868 0.7133 45 1 4.6708 6.4034 0.5089 46 1 5.4533 7.1069 -1.7173 47 1 4.3126 6.2862 -3.7394 48 1 2.3893 4.7623 -3.5352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = -9.391100 kcal Electronic energy + Delta-G solvation = -31421.602849 eV Core-core repulsion = 27605.153138 eV Total energy + Delta-G solvation = -3816.449711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -38.97599 -38.40899 -36.76486 -35.31226 -34.93251 -32.44572 -31.16326 -30.82009 -30.78336 -28.79447 -27.25622 -26.50027 -24.72336 -22.98764 -22.78309 -22.49087 -20.20235 -18.99960 -18.24774 -17.58791 -17.08249 -16.83001 -15.77510 -15.66091 -15.21113 -14.62879 -14.34382 -14.22589 -14.01671 -13.78542 -13.49794 -13.31355 -13.04824 -12.91968 -12.77129 -12.27119 -12.02705 -12.01050 -11.90904 -11.75197 -11.57081 -11.53833 -11.27086 -11.09084 -10.99238 -10.94221 -10.85500 -10.63013 -10.46943 -10.34643 -10.08197 -9.97654 -9.91458 -9.61098 -9.15464 -8.85541 -8.73946 -8.10957 -7.58307 -7.25562 -5.89032 -3.47456 0.92807 1.20383 1.54771 3.50482 3.53281 3.55068 3.70830 3.85690 4.34046 4.73408 4.76939 5.04073 5.04405 5.07984 5.18204 5.23720 5.35781 5.52086 5.57043 5.63225 5.69036 5.71270 5.89042 5.91217 5.99003 6.12733 6.14170 6.15096 6.17999 6.29060 6.34862 6.36982 6.40791 6.43113 6.47887 6.55660 6.62515 6.82102 6.92593 6.99247 7.06739 7.17417 7.35659 7.70260 7.79034 8.06982 8.27306 8.42287 8.93478 9.19313 9.96195 11.40060 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.007243 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.304786 B = 3864.856586 C = 4429.997755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C 0.267 3.733 4 H 0.044 0.956 5 C -0.518 4.518 6 H 0.085 0.915 7 C 0.008 3.992 8 N -0.939 5.939 9 Si 1.060 2.940 10 H -0.297 1.297 11 H -0.297 1.297 12 H -0.297 1.297 13 N -0.960 5.960 14 C 0.139 3.861 15 C 0.103 3.897 16 C -0.183 4.183 17 C -0.159 4.159 18 N -0.768 5.768 19 S 2.681 3.319 20 O -0.983 6.983 21 O -0.961 6.961 22 C -0.664 4.664 23 C 0.002 3.998 24 C -0.143 4.143 25 C -0.071 4.071 26 C -0.151 4.151 27 C -0.019 4.019 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.267 0.733 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.319 0.681 43 H 0.320 0.680 44 H 0.141 0.859 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 5.238 -11.292 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.164 3.836 4 H 0.062 0.938 5 C -0.559 4.559 6 H 0.102 0.898 7 C -0.193 4.193 8 N -0.581 5.581 9 Si 0.893 3.107 10 H -0.224 1.224 11 H -0.224 1.224 12 H -0.224 1.224 13 N -0.798 5.798 14 C 0.012 3.988 15 C 0.008 3.992 16 C -0.243 4.243 17 C -0.216 4.216 18 N -0.298 5.298 19 S 2.773 3.227 20 O -0.973 6.973 21 O -0.951 6.951 22 C -0.750 4.750 23 C -0.017 4.017 24 C -0.162 4.162 25 C -0.090 4.090 26 C -0.169 4.169 27 C -0.038 4.038 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.145 0.855 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.784 5.515 -9.704 11.303 hybrid contribution 0.103 -0.113 -2.066 2.072 sum 1.887 5.402 -11.771 13.088 Atomic orbital electron populations 1.21948 0.99524 0.99525 1.00445 1.21940 0.91345 1.00059 1.02803 1.18888 0.96723 0.89575 0.78416 0.93798 1.22539 0.90403 1.39917 1.03011 0.89751 1.25176 1.05222 0.96032 0.92847 1.70729 1.06991 1.47102 1.33256 0.83652 0.76560 0.75560 0.74935 1.22443 1.22377 1.22387 1.57192 1.81008 1.27992 1.13635 1.21183 0.94895 0.97827 0.84917 1.21105 0.95482 0.94571 0.88067 1.22757 1.01191 1.00937 0.99451 1.22504 0.98741 0.96179 1.04214 1.60480 1.06481 1.13974 1.48853 1.02080 0.74310 0.73254 0.73070 1.93495 1.68411 1.86638 1.48749 1.93547 1.76331 1.85375 1.39847 1.31164 1.24556 1.19943 0.99332 1.20959 0.91943 0.91007 0.97793 1.21256 0.97675 0.99509 0.97728 1.21342 0.97820 0.96955 0.92848 1.21124 0.97339 0.99889 0.98585 1.20781 0.94154 0.93286 0.95611 0.94589 0.93516 0.94339 0.92217 0.90125 0.92087 0.91089 0.90556 0.92880 0.93046 0.93086 0.87812 0.93825 0.93851 0.86582 0.86656 0.84125 0.85454 0.85982 0.85866 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.67 37.16 0.36 -2.59 16 2 C -0.12 -2.48 4.36 -26.73 -0.12 -2.59 16 3 C 0.27 5.76 1.60 -69.08 -0.11 5.65 16 4 H 0.04 1.11 6.36 -51.93 -0.33 0.78 16 5 C -0.52 -11.73 5.35 -34.44 -0.18 -11.92 16 6 H 0.08 1.83 2.94 -52.49 -0.15 1.67 16 7 C 0.01 0.19 5.23 -17.82 -0.09 0.10 16 8 N -0.94 -26.08 12.76 55.43 0.71 -25.37 16 9 Si 1.06 23.92 29.91 -169.99 -5.08 18.84 16 10 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.96 -17.97 1.58 -108.53 -0.17 -18.14 16 14 C 0.14 2.23 4.45 -4.04 -0.02 2.21 16 15 C 0.10 1.53 0.82 -131.60 -0.11 1.42 16 16 C -0.18 -2.23 8.76 37.16 0.33 -1.90 16 17 C -0.16 -2.48 6.42 37.16 0.24 -2.24 16 18 N -0.77 -12.51 3.56 0.74 0.00 -12.51 16 19 S 2.68 51.65 5.70 -107.50 -0.61 51.04 16 20 O -0.98 -19.38 15.80 -57.17 -0.90 -20.28 16 21 O -0.96 -21.43 15.78 -57.17 -0.90 -22.33 16 22 C -0.66 -11.38 3.98 -39.58 -0.16 -11.54 16 23 C 0.00 0.04 9.52 -39.58 -0.38 -0.34 16 24 C -0.14 -2.05 10.05 -39.58 -0.40 -2.44 16 25 C -0.07 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.15 -1.91 10.05 -39.58 -0.40 -2.31 16 27 C -0.02 -0.28 6.59 -39.58 -0.26 -0.54 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.68 7.37 -51.93 -0.38 0.30 16 31 H 0.06 1.12 3.98 -51.93 -0.21 0.91 16 32 H 0.08 1.89 5.89 -51.93 -0.31 1.59 16 33 H 0.27 7.47 5.97 -40.82 -0.24 7.22 16 34 H 0.07 1.11 6.14 -51.93 -0.32 0.79 16 35 H 0.08 1.16 6.84 -51.93 -0.35 0.80 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.87 3.20 -51.93 -0.17 1.71 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.60 5.77 -51.93 -0.30 0.30 16 42 H 0.32 4.98 7.13 -39.29 -0.28 4.70 16 43 H 0.32 5.07 8.98 -39.29 -0.35 4.71 16 44 H 0.14 2.53 7.61 -52.49 -0.40 2.13 16 45 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 48 H 0.13 1.77 7.28 -52.49 -0.38 1.39 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -29.41 361.79 -9.99 -39.39 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.78 Total: 14.23 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -1.70 Total: -30.32 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.54 Total: -56.02 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.81 Total: -42.61 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.08 Total: 18.84 kcal Atomic # 16 Polarization: 51.65 SS G_CDS: -0.61 Total: 51.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.41 -9.99 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.003 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds