Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.08999 * 109.47032 * 54.15713 * 3 2 1 5 5 C 1.50701 * 109.47143 * 174.15410 * 3 2 1 6 6 H 1.08001 * 120.00277 * 117.30062 * 5 3 2 7 7 C 1.37877 * 120.00312 * 297.30523 * 5 3 2 8 8 N 1.31511 * 119.99681 * 355.37822 * 7 5 3 9 9 Si 1.86802 * 120.00323 * 175.38156 * 7 5 3 10 10 H 1.48503 * 109.46644 * 270.00074 * 9 7 5 11 11 H 1.48494 * 109.46932 * 29.99647 * 9 7 5 12 12 H 1.48497 * 109.47031 * 149.99838 * 9 7 5 13 13 N 1.46501 * 109.47196 * 294.15398 * 3 2 1 14 14 C 1.46503 * 119.99883 * 316.59357 * 13 3 2 15 15 C 1.53001 * 109.47103 * 294.54691 * 14 13 3 16 16 C 1.52997 * 109.46972 * 186.90528 * 15 14 13 17 17 C 1.52998 * 109.46860 * 306.90129 * 15 14 13 18 18 N 1.46900 * 109.47179 * 66.90062 * 15 14 13 19 19 S 1.65599 * 120.00047 * 136.59138 * 13 3 2 20 20 O 1.42103 * 106.40347 * 203.54219 * 19 13 3 21 21 O 1.42100 * 106.39919 * 336.46107 * 19 13 3 22 22 C 1.76195 * 107.21732 * 90.00121 * 19 13 3 23 23 C 1.38237 * 120.00369 * 269.72867 * 22 19 13 24 24 C 1.38235 * 120.00091 * 179.76759 * 23 22 19 25 25 C 1.38234 * 120.00126 * 0.50609 * 24 23 22 26 26 C 1.38234 * 119.99823 * 359.74365 * 25 24 23 27 27 C 1.38234 * 119.99986 * 90.00234 * 22 19 13 28 28 H 1.08995 * 109.46990 * 185.00652 * 1 2 3 29 29 H 1.09001 * 109.46999 * 305.00595 * 1 2 3 30 30 H 1.08995 * 109.47396 * 65.00475 * 1 2 3 31 31 H 1.09002 * 109.47097 * 239.99743 * 2 1 3 32 32 H 1.09002 * 109.47178 * 119.99769 * 2 1 3 33 33 H 0.96997 * 120.00226 * 355.53045 * 8 7 5 34 34 H 1.09006 * 109.46985 * 54.54419 * 14 13 3 35 35 H 1.08994 * 109.46767 * 174.54407 * 14 13 3 36 36 H 1.08998 * 109.47431 * 59.99403 * 16 15 14 37 37 H 1.08996 * 109.47172 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.46928 * 299.99395 * 16 15 14 39 39 H 1.09002 * 109.47065 * 60.43554 * 17 15 14 40 40 H 1.08998 * 109.46879 * 180.42799 * 17 15 14 41 41 H 1.09004 * 109.47507 * 300.43034 * 17 15 14 42 42 H 1.00897 * 110.99369 * 60.00394 * 18 15 14 43 43 H 1.00902 * 110.99887 * 183.95161 * 18 15 14 44 44 H 1.08002 * 119.99645 * 359.97438 * 23 22 19 45 45 H 1.08001 * 119.99479 * 180.22559 * 24 23 22 46 46 H 1.08000 * 120.00152 * 179.72837 * 25 24 23 47 47 H 1.07998 * 120.00382 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00103 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9856 0.8330 5 6 3.5400 1.4450 0.1447 6 1 4.1581 1.8464 -0.6448 7 6 4.1235 0.9347 1.2850 8 7 3.3704 0.5296 2.2841 9 14 5.9837 0.8189 1.4108 10 1 6.4339 -0.4972 0.8907 11 1 6.6025 1.9056 0.6100 12 1 6.3932 0.9562 2.8315 13 7 1.6699 2.0913 -1.2603 14 6 1.8267 1.3731 -2.5275 15 6 3.3125 1.1176 -2.7885 16 6 3.4897 0.5235 -4.1872 17 6 4.0812 2.4370 -2.6936 18 7 3.8306 0.1759 -1.7872 19 16 1.0743 3.6365 -1.2524 20 8 0.3190 3.7815 -2.4473 21 8 0.5291 3.8497 0.0424 22 6 2.4508 4.7267 -1.3985 23 6 3.0879 5.1916 -0.2632 24 6 4.1708 6.0431 -0.3780 25 6 4.6101 6.4381 -1.6278 26 6 3.9697 5.9773 -2.7629 27 6 2.8900 5.1217 -2.6483 28 1 -0.3633 -1.0237 0.0897 29 1 -0.3633 0.5895 0.8418 30 1 -0.3634 0.4342 -0.9314 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4086 0.6492 2.2460 34 1 1.2983 0.4212 -2.4735 35 1 1.4132 1.9727 -3.3384 36 1 3.1052 1.2222 -4.9302 37 1 4.5482 0.3419 -4.3733 38 1 2.9421 -0.4165 -4.2548 39 1 3.9611 2.8564 -1.6947 40 1 5.1385 2.2562 -2.8870 41 1 3.6916 3.1384 -3.4315 42 1 3.3387 -0.7040 -1.8297 43 1 4.8243 0.0403 -1.8984 44 1 2.7417 4.8868 0.7133 45 1 4.6708 6.4034 0.5089 46 1 5.4533 7.1069 -1.7173 47 1 4.3126 6.2862 -3.7394 48 1 2.3893 4.7623 -3.5352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = -28.228181 kcal Electronic energy + Delta-G solvation = -31422.419686 eV Core-core repulsion = 27605.153138 eV Total energy + Delta-G solvation = -3817.266548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.17928 -39.73446 -38.36663 -36.91641 -36.43422 -34.14603 -32.56742 -32.17865 -31.94051 -30.09371 -28.68399 -27.74947 -26.23726 -24.66435 -24.07001 -23.61647 -21.80365 -20.36085 -19.63403 -19.03570 -18.69942 -18.39820 -17.17675 -16.88798 -16.54760 -15.89909 -15.67248 -15.57133 -15.38078 -15.27199 -15.16912 -14.59563 -14.47582 -14.41609 -13.95271 -13.55470 -13.44221 -13.32705 -13.21452 -13.15586 -13.08831 -13.01848 -12.72248 -12.55549 -12.34186 -12.32294 -12.23668 -12.10090 -11.89064 -11.84788 -11.70319 -11.65544 -11.45077 -11.27354 -10.58488 -10.18847 -10.01050 -9.86555 -9.21971 -8.67549 -7.83257 -5.41110 -0.49120 -0.04050 0.42481 1.67731 1.75258 1.88930 2.10013 2.63048 2.89817 2.91963 3.35432 3.66997 3.91268 3.92684 4.03504 4.06969 4.08213 4.16390 4.44551 4.46047 4.47181 4.53358 4.55602 4.61313 4.76155 4.80245 4.82435 4.89258 4.95033 5.04191 5.10566 5.14164 5.20884 5.23939 5.27510 5.29548 5.36257 5.40491 5.46584 5.49409 5.65895 5.74812 5.97058 5.98432 6.12618 6.56365 6.85472 6.97205 7.08437 7.24214 8.06724 9.42529 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.007243 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.304786 B = 3864.856586 C = 4429.997755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.000 1.000 5 C -0.481 4.481 6 H 0.102 0.898 7 C -0.046 4.046 8 N -0.982 5.982 9 Si 1.097 2.903 10 H -0.286 1.286 11 H -0.278 1.278 12 H -0.320 1.320 13 N -0.961 5.961 14 C 0.129 3.871 15 C 0.106 3.894 16 C -0.173 4.173 17 C -0.159 4.159 18 N -0.792 5.792 19 S 2.682 3.318 20 O -0.990 6.990 21 O -1.005 7.005 22 C -0.672 4.672 23 C -0.029 4.029 24 C -0.149 4.149 25 C -0.060 4.060 26 C -0.140 4.140 27 C -0.027 4.027 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.251 0.749 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.324 0.676 43 H 0.326 0.674 44 H 0.111 0.889 45 H 0.145 0.855 46 H 0.163 0.837 47 H 0.164 0.836 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 6.228 -15.194 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.172 3.828 4 H 0.018 0.982 5 C -0.522 4.522 6 H 0.119 0.881 7 C -0.240 4.240 8 N -0.628 5.628 9 Si 0.927 3.073 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.249 1.249 13 N -0.799 5.799 14 C 0.003 3.997 15 C 0.012 3.988 16 C -0.233 4.233 17 C -0.216 4.216 18 N -0.322 5.322 19 S 2.778 3.222 20 O -0.981 6.981 21 O -0.996 6.996 22 C -0.762 4.762 23 C -0.048 4.048 24 C -0.167 4.167 25 C -0.078 4.078 26 C -0.158 4.158 27 C -0.046 4.046 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.129 0.871 45 H 0.162 0.838 46 H 0.181 0.819 47 H 0.182 0.818 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.857 6.481 -13.656 15.600 hybrid contribution -0.554 -0.269 -0.957 1.138 sum 3.303 6.212 -14.614 16.219 Atomic orbital electron populations 1.21880 0.98273 1.00630 1.00126 1.21768 0.92464 0.98909 1.02156 1.18529 0.95947 0.89827 0.78545 0.98223 1.22830 0.91024 1.36240 1.02077 0.88105 1.26049 1.07490 0.97164 0.93266 1.70825 1.06143 1.50795 1.35011 0.83137 0.73807 0.76557 0.73758 1.21297 1.20329 1.24852 1.56978 1.81097 1.28147 1.13632 1.21493 0.96394 0.98004 0.83808 1.21055 0.94082 0.94176 0.89525 1.22596 1.02046 1.01328 0.97310 1.22449 0.99429 0.96673 1.03096 1.60158 1.07011 1.14540 1.50513 1.01656 0.74915 0.73619 0.72000 1.93468 1.69354 1.86854 1.48387 1.93492 1.78040 1.86023 1.42019 1.30625 1.24223 1.20637 1.00732 1.20889 0.93958 0.93291 0.96710 1.21530 0.96672 0.98740 0.99800 1.21833 0.98171 0.96159 0.91639 1.21602 0.95709 0.97990 1.00539 1.21043 0.95027 0.93831 0.94690 0.92403 0.95556 0.93231 0.90160 0.93262 0.93795 0.90582 0.89168 0.91673 0.92158 0.92314 0.90576 0.93095 0.92038 0.86112 0.86055 0.87051 0.83769 0.81904 0.81848 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 9.67 71.98 0.70 -5.12 16 2 C -0.11 -4.74 4.36 30.59 0.13 -4.61 16 3 C 0.28 12.37 1.60 44.25 0.07 12.44 16 4 H 0.00 0.01 6.36 -2.39 -0.02 -0.01 16 5 C -0.48 -22.15 5.35 25.60 0.14 -22.01 16 6 H 0.10 4.30 2.94 -2.91 -0.01 4.29 16 7 C -0.05 -2.40 5.23 84.66 0.44 -1.95 16 8 N -0.98 -57.47 12.76 21.45 0.27 -57.19 16 9 Si 1.10 48.78 29.91 68.60 2.05 50.83 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.32 -15.42 7.11 99.48 0.71 -14.71 16 13 N -0.96 -36.19 1.58 -497.27 -0.79 -36.97 16 14 C 0.13 3.92 4.45 86.38 0.38 4.31 16 15 C 0.11 2.87 0.82 3.53 0.00 2.87 16 16 C -0.17 -3.52 8.76 71.98 0.63 -2.89 16 17 C -0.16 -4.47 6.42 71.98 0.46 -4.00 16 18 N -0.79 -24.34 3.56 -151.57 -0.54 -24.88 16 19 S 2.68 105.74 5.70 -56.49 -0.32 105.42 16 20 O -0.99 -38.71 15.80 -128.00 -2.02 -40.74 16 21 O -1.01 -48.02 15.78 -128.00 -2.02 -50.04 16 22 C -0.67 -22.77 3.98 22.27 0.09 -22.68 16 23 C -0.03 -1.00 9.52 22.27 0.21 -0.79 16 24 C -0.15 -3.99 10.05 22.27 0.22 -3.76 16 25 C -0.06 -1.24 10.05 22.27 0.22 -1.01 16 26 C -0.14 -2.87 10.05 22.27 0.22 -2.65 16 27 C -0.03 -0.71 6.59 22.27 0.15 -0.56 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.76 7.37 -2.39 -0.02 1.74 16 31 H 0.08 2.98 3.98 -2.39 -0.01 2.97 16 32 H 0.05 2.42 5.89 -2.39 -0.01 2.41 16 33 H 0.25 15.09 5.97 -92.71 -0.55 14.54 16 34 H 0.08 2.22 6.14 -2.38 -0.01 2.21 16 35 H 0.09 2.51 6.84 -2.39 -0.02 2.50 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 39 H 0.08 2.60 3.20 -2.39 -0.01 2.60 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.48 5.77 -2.39 -0.01 1.46 16 42 H 0.32 9.52 7.13 -89.70 -0.64 8.88 16 43 H 0.33 9.53 8.98 -89.69 -0.81 8.72 16 44 H 0.11 4.39 7.61 -2.91 -0.02 4.37 16 45 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 46 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 47 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.14 3.40 7.28 -2.91 -0.02 3.37 16 Total: -1.00 -68.05 361.79 0.49 -67.56 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.23 Total: 38.43 kcal Atomic # 6 Polarization: -56.50 SS G_CDS: 4.08 Total: -52.42 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -1.05 Total: -119.04 kcal Atomic # 8 Polarization: -86.73 SS G_CDS: -4.04 Total: -90.78 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Atomic # 16 Polarization: 105.74 SS G_CDS: -0.32 Total: 105.42 kcal Total: -68.05 0.49 -67.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.330 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds