Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 H 1.08993 * 109.57952 * 304.72448 * 3 2 1 5 5 C 1.52721 * 109.65216 * 184.40818 * 3 2 1 6 6 N 1.46381 * 109.77080 * 182.65693 * 5 3 2 7 7 C 1.34775 * 119.64650 * 245.08834 * 6 5 3 8 8 O 1.21345 * 120.00015 * 7.41268 * 7 6 5 9 9 C 1.49452 * 119.99986 * 187.40827 * 7 6 5 10 10 O 1.21351 * 119.99941 * 8.57074 * 9 7 6 11 11 N 1.34774 * 120.00200 * 188.56555 * 9 7 6 12 12 C 1.46920 * 120.62996 * 178.55028 * 11 9 7 13 13 C 1.53197 * 108.77674 * 233.58770 * 12 11 9 14 14 C 1.53042 * 109.31262 * 305.36949 * 13 12 11 15 15 C 1.50697 * 109.45910 * 181.38386 * 14 13 12 16 16 H 1.07999 * 119.99920 * 359.72127 * 15 14 13 17 17 C 1.37872 * 120.00119 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99997 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00156 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47223 * 59.99614 * 19 17 15 21 21 H 1.48504 * 109.47162 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46818 * 299.99651 * 19 17 15 23 23 C 1.53035 * 109.53647 * 61.36245 * 14 13 12 24 24 C 1.46925 * 120.62787 * 358.53405 * 11 9 7 25 25 C 1.46371 * 120.70262 * 64.81032 * 6 5 3 26 26 C 1.53239 * 109.49190 * 295.18784 * 25 6 5 27 27 S 1.81739 * 108.79629 * 57.65897 * 26 25 6 28 28 H 1.08999 * 109.47203 * 59.99660 * 1 2 3 29 29 H 1.08999 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46773 * 299.99996 * 1 2 3 31 31 H 1.09002 * 109.46773 * 240.00003 * 2 1 3 32 32 H 1.09000 * 109.47005 * 119.99828 * 2 1 3 33 33 H 1.09008 * 109.33168 * 62.56672 * 5 3 2 34 34 H 1.08994 * 109.32907 * 302.75164 * 5 3 2 35 35 H 1.09007 * 109.58629 * 113.80240 * 12 11 9 36 36 H 1.08999 * 109.58788 * 353.37785 * 12 11 9 37 37 H 1.08999 * 109.49586 * 185.41358 * 13 12 11 38 38 H 1.09005 * 109.49290 * 65.31733 * 13 12 11 39 39 H 1.08994 * 109.45643 * 301.35242 * 14 13 12 40 40 H 0.97001 * 120.00066 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.50127 * 58.58990 * 23 14 13 42 42 H 1.09011 * 109.49397 * 178.68361 * 23 14 13 43 43 H 1.09005 * 109.58199 * 246.19301 * 24 11 9 44 44 H 1.09000 * 109.59050 * 6.61891 * 24 11 9 45 45 H 1.09003 * 109.46734 * 55.19595 * 25 6 5 46 46 H 1.09001 * 109.46642 * 175.18427 * 25 6 5 47 47 H 1.09000 * 109.58477 * 177.44725 * 26 25 6 48 48 H 1.08995 * 109.58558 * 297.86595 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6103 1.9819 -0.8440 5 6 3.5632 1.4489 -0.1105 6 7 4.0586 2.8249 -0.0472 7 6 4.6701 3.3634 -1.1207 8 8 4.6892 2.7608 -2.1738 9 6 5.3245 4.7028 -1.0142 10 8 5.4428 5.2358 0.0696 11 7 5.7835 5.3186 -2.1216 12 6 6.4006 6.6492 -2.0370 13 6 5.6890 7.5861 -3.0182 14 6 5.7164 6.9684 -4.4181 15 6 5.0471 7.9031 -5.3925 16 1 4.6387 8.8413 -5.0471 17 6 4.9515 7.5581 -6.7239 18 7 5.4448 6.4136 -7.1438 19 14 4.1224 8.7170 -7.9319 20 1 4.8447 10.0144 -7.9483 21 1 4.1499 8.1184 -9.2906 22 1 2.7141 8.9398 -7.5169 23 6 4.9731 5.6308 -4.4020 24 6 5.6765 4.6718 -3.4365 25 6 3.8915 3.6241 1.1677 26 6 2.3994 3.8650 1.4200 27 16 1.5608 2.2580 1.5519 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8580 1.0000 -1.0592 34 1 3.9870 0.8720 0.7114 35 1 7.4565 6.5797 -2.2986 36 1 6.2980 7.0357 -1.0230 37 1 6.1983 8.5496 -3.0355 38 1 4.6551 7.7262 -2.7025 39 1 6.7501 6.8055 -4.7229 40 1 5.3772 6.1707 -8.0804 41 1 3.9459 5.7893 -4.0734 42 1 4.9728 5.2026 -5.4045 43 1 6.6734 4.4410 -3.8123 44 1 5.0963 3.7535 -3.3460 45 1 4.3219 3.0909 2.0154 46 1 4.3984 4.5813 1.0453 47 1 2.2710 4.4213 2.3485 48 1 1.9754 4.4313 0.5908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261326483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = -40.794895 kcal Electronic energy + Delta-G solvation = -28699.356467 eV Core-core repulsion = 24881.544986 eV Total energy + Delta-G solvation = -3817.811482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14574 -38.88664 -37.60982 -36.69937 -35.05903 -33.54027 -31.32384 -31.08109 -30.12304 -29.67393 -26.76022 -25.19123 -24.07453 -23.17201 -22.50589 -21.80758 -21.49570 -20.02009 -18.81271 -17.45672 -17.01771 -16.65997 -16.40849 -15.96938 -15.87346 -15.31936 -15.16358 -14.67960 -14.57466 -14.30245 -14.08715 -13.75025 -13.42015 -13.35362 -13.08234 -12.96199 -12.79474 -12.68534 -12.42692 -12.19491 -11.98270 -11.73906 -11.56151 -11.46613 -11.41139 -11.24712 -10.95495 -10.76571 -10.49415 -10.39876 -10.13010 -9.97194 -9.59025 -9.25496 -9.20644 -9.09665 -8.57486 -8.40010 -8.17565 -7.84830 -6.04204 -4.11059 1.40442 1.46568 2.25709 2.28757 3.20316 3.28471 3.33626 3.36018 3.44297 4.18504 4.30428 4.39222 4.49921 4.71467 4.75314 4.85924 4.96763 5.13380 5.18046 5.25507 5.31415 5.40890 5.45768 5.51436 5.60789 5.66535 5.72987 5.77292 5.80960 5.92486 5.99845 6.02041 6.06402 6.18513 6.38090 6.51422 6.60975 6.71534 6.86418 6.96108 7.09357 7.21202 7.60243 7.67038 7.75963 7.89530 8.00507 8.10533 8.37479 8.91890 9.54069 11.01200 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.002932 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.398434 B = 9547.780972 C =10353.011907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C -0.065 4.065 4 H 0.093 0.907 5 C 0.109 3.891 6 N -0.588 5.588 7 C 0.512 3.488 8 O -0.498 6.498 9 C 0.501 3.499 10 O -0.533 6.533 11 N -0.550 5.550 12 C 0.104 3.896 13 C -0.122 4.122 14 C 0.046 3.954 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.120 4.120 24 C 0.044 3.956 25 C 0.044 3.956 26 C -0.098 4.098 27 S -0.263 6.263 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.139 0.861 45 H 0.079 0.921 46 H 0.175 0.825 47 H 0.116 0.884 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -11.165 16.367 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.194 4.194 4 H 0.111 0.889 5 C -0.015 4.015 6 N -0.321 5.321 7 C 0.296 3.704 8 O -0.374 6.374 9 C 0.284 3.716 10 O -0.415 6.415 11 N -0.279 5.279 12 C -0.017 4.017 13 C -0.161 4.161 14 C 0.027 3.973 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.159 4.159 24 C -0.075 4.075 25 C -0.078 4.078 26 C -0.247 4.247 27 S -0.036 6.036 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.156 0.844 45 H 0.098 0.902 46 H 0.191 0.809 47 H 0.134 0.866 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.998 -11.684 16.974 21.204 hybrid contribution 0.141 1.125 -1.711 2.053 sum -4.856 -10.560 15.263 19.185 Atomic orbital electron populations 1.21801 0.94715 1.01867 1.02723 1.21338 0.96992 0.92543 1.03175 1.23580 0.98147 1.00135 0.97563 0.88880 1.21741 0.92035 0.82711 1.05062 1.47817 1.56402 1.13837 1.14060 1.20404 0.79153 0.87304 0.83499 1.90398 1.59100 1.62058 1.25848 1.19817 0.80858 0.86036 0.84859 1.90181 1.58740 1.66640 1.25978 1.48329 1.53819 1.18051 1.07732 1.21967 0.96912 0.81537 1.01319 1.22022 0.99346 0.97444 0.97238 1.18681 0.96622 0.92437 0.89521 1.21138 1.37594 1.03971 0.92593 0.92777 1.24960 0.95428 0.95228 0.98311 1.69829 1.45782 1.21472 1.15766 0.86675 0.80042 0.81132 0.80248 1.20308 1.21272 1.20346 1.21994 0.97223 0.96970 0.99683 1.23546 1.03141 1.00318 0.80544 1.23476 0.95356 1.02623 0.86368 1.23944 0.98069 0.96235 1.06440 1.86773 1.69413 1.18310 1.29112 0.92454 0.92367 0.91702 0.90217 0.90783 0.87582 0.89602 0.91260 0.89904 0.91713 0.92864 0.95399 0.92862 0.94585 0.87603 0.91878 0.84434 0.90220 0.80949 0.86552 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.74 37.16 0.36 -0.84 16 2 C -0.10 -0.80 5.42 -26.72 -0.14 -0.94 16 3 C -0.06 -0.64 2.75 -26.87 -0.07 -0.71 16 4 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.11 1.13 5.46 -4.25 -0.02 1.10 16 6 N -0.59 -7.30 2.80 -174.42 -0.49 -7.79 16 7 C 0.51 7.80 7.61 -11.58 -0.09 7.72 16 8 O -0.50 -8.41 12.38 5.50 0.07 -8.34 16 9 C 0.50 8.25 7.62 -11.59 -0.09 8.16 16 10 O -0.53 -8.69 12.50 5.50 0.07 -8.62 16 11 N -0.55 -9.76 2.97 -173.27 -0.51 -10.27 16 12 C 0.10 1.78 6.43 -3.71 -0.02 1.76 16 13 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 14 C 0.05 1.08 2.06 -91.73 -0.19 0.89 16 15 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.57 11.31 55.43 0.63 -23.94 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.12 -2.73 5.15 -26.61 -0.14 -2.86 16 24 C 0.04 0.85 6.21 -3.71 -0.02 0.83 16 25 C 0.04 0.49 6.02 -3.99 -0.02 0.47 16 26 C -0.10 -1.00 6.67 37.28 0.25 -0.75 16 27 S -0.26 -2.73 20.48 -107.50 -2.20 -4.93 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.56 7.14 -51.93 -0.37 0.19 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 1.16 6.93 -51.92 -0.36 0.80 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.32 7.01 -51.93 -0.36 0.96 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.11 2.70 6.04 -51.92 -0.31 2.38 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.14 2.63 3.83 -56.80 -0.22 2.42 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.18 2.22 3.70 -57.16 -0.21 2.01 16 47 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -27.88 376.43 -10.25 -38.13 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.72 Total: 4.35 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.74 Total: -0.09 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.38 Total: -42.00 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.14 Total: -16.96 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.20 Total: -4.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.88 -10.25 -38.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261326483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.669 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds