Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47115 * 226.50387 * 3 2 1 5 5 C 1.34273 * 119.37832 * 90.00128 * 4 3 2 6 6 O 1.21279 * 118.96931 * 1.96252 * 5 4 3 7 7 C 1.50276 * 122.06241 * 181.93438 * 5 4 3 8 8 O 1.42826 * 110.49518 * 341.64252 * 7 5 4 9 9 C 1.43389 * 113.33132 * 51.30058 * 8 7 5 10 10 C 1.45921 * 119.38707 * 269.98258 * 4 3 2 11 11 C 1.53476 * 113.79957 * 32.94443 * 10 4 3 12 12 N 1.48055 * 86.05394 * 268.89226 * 11 10 4 13 13 C 1.46901 * 110.99734 * 222.70989 * 12 11 10 14 14 C 1.50699 * 109.47192 * 283.77656 * 13 12 11 15 15 C 1.37633 * 120.12724 * 104.52515 * 14 13 12 16 16 C 1.38617 * 120.24782 * 179.70301 * 15 14 13 17 17 C 1.38651 * 120.50014 * 0.59564 * 16 15 14 18 18 C 1.37608 * 120.24920 * 359.68258 * 17 16 15 19 19 C 1.40706 * 120.12756 * 284.80021 * 14 13 12 20 20 C 1.41398 * 120.24328 * 0.02562 * 19 14 13 21 21 H 1.07999 * 120.00163 * 330.94625 * 20 19 14 22 22 C 1.39949 * 119.99511 * 150.94131 * 20 19 14 23 23 N 1.30816 * 120.00047 * 346.65762 * 22 20 19 24 24 Si 1.86799 * 119.99698 * 166.66355 * 22 20 19 25 25 H 1.48502 * 109.47140 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47189 * 119.99724 * 24 22 20 27 27 H 1.48504 * 109.46974 * 240.00061 * 24 22 20 28 28 C 1.48042 * 90.83196 * 335.63400 * 12 11 10 29 29 H 4.40634 * 5.51496 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47020 * 106.50950 * 3 2 1 31 31 H 1.08996 * 109.47899 * 346.50774 * 3 2 1 32 32 H 1.09001 * 109.27060 * 221.38785 * 7 5 4 33 33 H 1.08992 * 109.27085 * 101.90913 * 7 5 4 34 34 H 1.08993 * 109.71149 * 54.04666 * 9 8 7 35 35 H 1.09004 * 109.70658 * 174.66636 * 9 8 7 36 36 H 1.08992 * 113.78312 * 23.17779 * 11 10 4 37 37 H 1.08998 * 113.78040 * 154.61007 * 11 10 4 38 38 H 1.08997 * 109.47413 * 43.77956 * 13 12 11 39 39 H 1.09004 * 109.46401 * 163.78216 * 13 12 11 40 40 H 1.08000 * 119.87364 * 359.97438 * 15 14 13 41 41 H 1.07994 * 119.74693 * 180.29554 * 16 15 14 42 42 H 1.08001 * 119.88065 * 179.70503 * 17 16 15 43 43 H 1.07997 * 120.12241 * 180.02562 * 18 17 16 44 44 H 0.97004 * 119.99626 * 179.97438 * 23 22 20 45 45 H 1.09007 * 113.77914 * 270.08031 * 28 12 11 46 46 H 1.08994 * 113.78505 * 138.64889 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9516 1.0020 5 6 3.3536 0.5304 2.2578 6 8 3.1765 -0.6394 2.5245 7 6 3.8128 1.4628 3.3431 8 8 4.3646 2.6534 2.7792 9 6 3.5052 3.2764 1.8152 10 6 3.3723 2.3386 0.6165 11 6 2.4114 2.8553 -0.4630 12 7 3.4237 2.3940 -1.4400 13 6 3.6102 3.3820 -2.5110 14 6 2.4509 3.3073 -3.4709 15 6 1.4730 4.2756 -3.4498 16 6 0.4088 4.2126 -4.3358 17 6 0.3097 3.1694 -5.2437 18 6 1.2728 2.1872 -5.2788 19 6 2.3610 2.2442 -4.3882 20 6 3.3563 1.2402 -4.4147 21 1 4.3685 1.4754 -4.1203 22 6 3.0299 -0.0581 -4.8225 23 7 1.7757 -0.4148 -4.9274 24 14 4.3851 -1.2818 -5.2166 25 1 5.7078 -0.6355 -5.0213 26 1 4.2694 -2.4560 -4.3150 27 1 4.2556 -1.7263 -6.6277 28 6 4.4911 2.5085 -0.4207 29 1 -1.0501 -0.0003 0.0000 30 1 3.0091 0.2929 -0.9853 31 1 3.0098 -0.9984 0.2397 32 1 4.5718 0.9657 3.9472 33 1 2.9646 1.7240 3.9757 34 1 2.5239 3.4511 2.2562 35 1 3.9386 4.2237 1.4943 36 1 1.4706 2.3072 -0.5129 37 1 2.2750 3.9366 -0.4489 38 1 3.6601 4.3814 -2.0787 39 1 4.5372 3.1697 -3.0436 40 1 1.5374 5.0899 -2.7433 41 1 -0.3515 4.9793 -4.3154 42 1 -0.5262 3.1276 -5.9263 43 1 1.1939 1.3757 -5.9871 44 1 1.5494 -1.3147 -5.2104 45 1 4.9702 3.4873 -0.3940 46 1 5.2044 1.6846 -0.4367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274347891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = 56.560776 kcal Electronic energy + Delta-G solvation = -30747.170661 eV Core-core repulsion = 26798.136887 eV Total energy + Delta-G solvation = -3949.033774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44178 -39.15171 -37.75216 -37.38116 -35.00904 -33.56935 -32.61531 -31.45623 -29.62717 -29.37201 -28.58209 -26.71111 -26.07188 -25.22992 -24.95123 -22.80110 -21.07693 -20.77883 -19.54037 -18.92699 -18.00616 -17.58848 -17.12346 -16.63728 -16.09937 -15.67910 -15.42895 -15.19633 -14.80281 -14.64400 -14.47635 -14.11881 -14.02447 -13.51429 -13.33246 -13.24684 -12.73159 -12.61943 -12.56358 -12.35022 -12.00478 -11.62615 -11.50209 -11.42570 -11.22992 -11.08527 -10.90896 -10.73438 -10.62524 -10.57332 -10.38429 -10.22445 -9.71014 -9.51480 -9.36821 -9.27737 -9.15755 -8.81148 -8.25736 -7.39102 -7.30712 -6.67754 -4.28719 2.38598 2.52661 2.78310 2.93459 3.11743 3.15121 3.24462 3.29367 3.39814 3.58484 3.98225 4.10829 4.19105 4.40393 4.55312 4.70498 4.80940 4.86647 5.05269 5.16292 5.32852 5.35100 5.45746 5.59205 5.67945 5.79685 5.82693 5.83348 5.99235 6.08609 6.16936 6.19647 6.31038 6.37640 6.42307 6.47919 6.60878 6.73980 6.82587 7.14729 7.24329 7.33234 7.39178 7.51360 7.63410 7.88705 7.98371 8.03702 8.05550 8.09778 8.32354 8.66318 8.94986 9.00473 10.27493 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.004723 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.201933 B = 5926.741516 C = 6870.192534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.209 3.791 4 N -0.566 5.566 5 C 0.487 3.513 6 O -0.539 6.539 7 C 0.050 3.950 8 O -0.367 6.367 9 C 0.063 3.937 10 C 0.102 3.898 11 C 0.009 3.991 12 N -0.444 5.444 13 C 0.096 3.904 14 C -0.196 4.196 15 C -0.086 4.086 16 C -0.244 4.244 17 C -0.106 4.106 18 C -0.160 4.160 19 C 0.133 3.867 20 C -0.438 4.438 21 H 0.077 0.923 22 C 0.078 3.922 23 N -0.796 5.796 24 Si 0.899 3.101 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.004 4.004 29 H 0.213 0.787 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.277 0.723 45 H 0.077 0.923 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 5.546 11.366 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C 0.089 3.911 4 N -0.297 5.297 5 C 0.275 3.725 6 O -0.416 6.416 7 C -0.029 4.029 8 O -0.285 6.285 9 C -0.015 4.015 10 C 0.014 3.986 11 C -0.121 4.121 12 N -0.166 5.166 13 C -0.031 4.031 14 C -0.198 4.198 15 C -0.105 4.105 16 C -0.264 4.264 17 C -0.124 4.124 18 C -0.180 4.180 19 C 0.130 3.870 20 C -0.468 4.468 21 H 0.095 0.905 22 C -0.139 4.139 23 N -0.421 5.421 24 Si 0.724 3.276 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.134 4.134 29 H 0.230 0.770 30 H 0.161 0.839 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.844 4.174 11.145 12.236 hybrid contribution -0.075 0.088 -0.088 0.145 sum 2.769 4.262 11.057 12.169 Atomic orbital electron populations 1.24749 0.95779 1.00725 1.00862 1.23310 0.94645 1.00118 1.00038 1.18668 0.83990 0.93664 0.94792 1.47223 1.63861 1.09158 1.09492 1.21166 0.77681 0.89699 0.83954 1.90740 1.52282 1.17723 1.80899 1.22753 1.01377 0.84933 0.93851 1.88153 1.43769 1.38756 1.57803 1.23052 0.95533 0.95634 0.87254 1.22449 0.98688 0.82381 0.95070 1.24237 0.98451 0.99731 0.89657 1.68767 1.01870 1.42297 1.03665 1.21121 0.98637 0.91071 0.92271 1.19346 0.98543 1.00817 1.01058 1.20326 0.94960 0.97249 0.97990 1.20277 1.00992 1.01473 1.03638 1.20682 0.98058 0.95391 0.98310 1.21317 0.96836 0.98748 1.01050 1.17344 0.91657 0.90249 0.87707 1.19438 0.96548 0.92988 1.37817 0.90540 1.25802 0.95747 0.99386 0.92948 1.69813 1.18059 1.19680 1.34593 0.86403 0.82138 0.80351 0.78686 1.18555 1.20038 1.20059 1.24422 0.95735 1.02152 0.91126 0.77049 0.83868 0.88307 0.85232 0.89481 0.91581 0.86455 0.88299 0.90506 0.95765 0.90766 0.90122 0.89907 0.89777 0.86739 0.91218 0.90466 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.44 19.24 29.55 0.57 -2.88 16 2 C -0.18 -3.30 11.73 -37.12 -0.44 -3.73 16 3 C 0.21 3.65 5.22 -6.83 -0.04 3.62 16 4 N -0.57 -8.48 2.62 -165.41 -0.43 -8.91 16 5 C 0.49 7.18 7.63 -11.42 -0.09 7.09 16 6 O -0.54 -9.73 16.45 5.56 0.09 -9.63 16 7 C 0.05 0.54 6.94 35.80 0.25 0.78 16 8 O -0.37 -3.99 10.84 -35.23 -0.38 -4.37 16 9 C 0.06 0.63 6.09 37.04 0.23 0.85 16 10 C 0.10 1.31 1.56 -135.15 -0.21 1.10 16 11 C 0.01 0.13 6.39 -2.95 -0.02 0.11 16 12 N -0.44 -7.43 4.23 -241.77 -1.02 -8.46 16 13 C 0.10 1.72 4.21 -4.98 -0.02 1.70 16 14 C -0.20 -4.26 5.16 -103.91 -0.54 -4.79 16 15 C -0.09 -1.80 9.65 -39.66 -0.38 -2.19 16 16 C -0.24 -5.29 10.05 -39.29 -0.39 -5.69 16 17 C -0.11 -2.43 10.02 -39.66 -0.40 -2.83 16 18 C -0.16 -4.02 8.66 -38.87 -0.34 -4.36 16 19 C 0.13 3.29 5.53 -106.82 -0.59 2.70 16 20 C -0.44 -10.75 8.35 -37.74 -0.32 -11.07 16 21 H 0.08 1.83 6.65 -52.49 -0.35 1.48 16 22 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 23 N -0.80 -20.11 11.01 55.55 0.61 -19.50 16 24 Si 0.90 18.55 29.58 -169.99 -5.03 13.52 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 28 C 0.00 -0.06 7.11 -2.94 -0.02 -0.08 16 29 H 0.21 2.84 7.80 -54.08 -0.42 2.41 16 30 H 0.14 2.76 6.03 -51.93 -0.31 2.45 16 31 H 0.10 1.76 7.29 -51.93 -0.38 1.38 16 32 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.12 0.92 7.86 -51.93 -0.41 0.52 16 36 H 0.10 1.74 6.01 -51.93 -0.31 1.43 16 37 H 0.08 1.01 7.64 -51.93 -0.40 0.62 16 38 H 0.02 0.38 7.50 -51.93 -0.39 -0.01 16 39 H 0.07 1.38 7.01 -51.93 -0.36 1.02 16 40 H 0.08 1.47 8.00 -52.49 -0.42 1.05 16 41 H 0.08 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.11 3.01 6.34 -52.49 -0.33 2.67 16 44 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 45 H 0.08 0.87 7.64 -51.92 -0.40 0.47 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -29.22 377.50 -9.46 -38.68 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.15 Total: 10.84 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.83 Total: -17.85 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.84 Total: -36.87 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.29 Total: -14.01 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.22 -9.46 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274347891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.236 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds