Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47115 * 226.50387 * 3 2 1 5 5 C 1.34273 * 119.37832 * 90.00128 * 4 3 2 6 6 O 1.21279 * 118.96931 * 1.96252 * 5 4 3 7 7 C 1.50276 * 122.06241 * 181.93438 * 5 4 3 8 8 O 1.42826 * 110.49518 * 341.64252 * 7 5 4 9 9 C 1.43389 * 113.33132 * 51.30058 * 8 7 5 10 10 C 1.45921 * 119.38707 * 269.98258 * 4 3 2 11 11 C 1.53476 * 113.79957 * 32.94443 * 10 4 3 12 12 N 1.48055 * 86.05394 * 268.89226 * 11 10 4 13 13 C 1.46901 * 110.99734 * 222.70989 * 12 11 10 14 14 C 1.50699 * 109.47192 * 283.77656 * 13 12 11 15 15 C 1.37633 * 120.12724 * 104.52515 * 14 13 12 16 16 C 1.38617 * 120.24782 * 179.70301 * 15 14 13 17 17 C 1.38651 * 120.50014 * 0.59564 * 16 15 14 18 18 C 1.37608 * 120.24920 * 359.68258 * 17 16 15 19 19 C 1.40706 * 120.12756 * 284.80021 * 14 13 12 20 20 C 1.41398 * 120.24328 * 0.02562 * 19 14 13 21 21 H 1.07999 * 120.00163 * 330.94625 * 20 19 14 22 22 C 1.39949 * 119.99511 * 150.94131 * 20 19 14 23 23 N 1.30816 * 120.00047 * 346.65762 * 22 20 19 24 24 Si 1.86799 * 119.99698 * 166.66355 * 22 20 19 25 25 H 1.48502 * 109.47140 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47189 * 119.99724 * 24 22 20 27 27 H 1.48504 * 109.46974 * 240.00061 * 24 22 20 28 28 C 1.48042 * 90.83196 * 335.63400 * 12 11 10 29 29 H 4.40634 * 5.51496 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47020 * 106.50950 * 3 2 1 31 31 H 1.08996 * 109.47899 * 346.50774 * 3 2 1 32 32 H 1.09001 * 109.27060 * 221.38785 * 7 5 4 33 33 H 1.08992 * 109.27085 * 101.90913 * 7 5 4 34 34 H 1.08993 * 109.71149 * 54.04666 * 9 8 7 35 35 H 1.09004 * 109.70658 * 174.66636 * 9 8 7 36 36 H 1.08992 * 113.78312 * 23.17779 * 11 10 4 37 37 H 1.08998 * 113.78040 * 154.61007 * 11 10 4 38 38 H 1.08997 * 109.47413 * 43.77956 * 13 12 11 39 39 H 1.09004 * 109.46401 * 163.78216 * 13 12 11 40 40 H 1.08000 * 119.87364 * 359.97438 * 15 14 13 41 41 H 1.07994 * 119.74693 * 180.29554 * 16 15 14 42 42 H 1.08001 * 119.88065 * 179.70503 * 17 16 15 43 43 H 1.07997 * 120.12241 * 180.02562 * 18 17 16 44 44 H 0.97004 * 119.99626 * 179.97438 * 23 22 20 45 45 H 1.09007 * 113.77914 * 270.08031 * 28 12 11 46 46 H 1.08994 * 113.78505 * 138.64889 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9516 1.0020 5 6 3.3536 0.5304 2.2578 6 8 3.1765 -0.6394 2.5245 7 6 3.8128 1.4628 3.3431 8 8 4.3646 2.6534 2.7792 9 6 3.5052 3.2764 1.8152 10 6 3.3723 2.3386 0.6165 11 6 2.4114 2.8553 -0.4630 12 7 3.4237 2.3940 -1.4400 13 6 3.6102 3.3820 -2.5110 14 6 2.4509 3.3073 -3.4709 15 6 1.4730 4.2756 -3.4498 16 6 0.4088 4.2126 -4.3358 17 6 0.3097 3.1694 -5.2437 18 6 1.2728 2.1872 -5.2788 19 6 2.3610 2.2442 -4.3882 20 6 3.3563 1.2402 -4.4147 21 1 4.3685 1.4754 -4.1203 22 6 3.0299 -0.0581 -4.8225 23 7 1.7757 -0.4148 -4.9274 24 14 4.3851 -1.2818 -5.2166 25 1 5.7078 -0.6355 -5.0213 26 1 4.2694 -2.4560 -4.3150 27 1 4.2556 -1.7263 -6.6277 28 6 4.4911 2.5085 -0.4207 29 1 -1.0501 -0.0003 0.0000 30 1 3.0091 0.2929 -0.9853 31 1 3.0098 -0.9984 0.2397 32 1 4.5718 0.9657 3.9472 33 1 2.9646 1.7240 3.9757 34 1 2.5239 3.4511 2.2562 35 1 3.9386 4.2237 1.4943 36 1 1.4706 2.3072 -0.5129 37 1 2.2750 3.9366 -0.4489 38 1 3.6601 4.3814 -2.0787 39 1 4.5372 3.1697 -3.0436 40 1 1.5374 5.0899 -2.7433 41 1 -0.3515 4.9793 -4.3154 42 1 -0.5262 3.1276 -5.9263 43 1 1.1939 1.3757 -5.9871 44 1 1.5494 -1.3147 -5.2104 45 1 4.9702 3.4873 -0.3940 46 1 5.2044 1.6846 -0.4367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274347891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = 39.100628 kcal Electronic energy + Delta-G solvation = -30747.927790 eV Core-core repulsion = 26798.136887 eV Total energy + Delta-G solvation = -3949.790903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.53545 -40.38358 -39.20994 -38.51764 -36.30126 -35.37765 -33.94439 -32.89964 -31.28592 -30.65777 -29.71229 -28.06044 -27.30821 -26.70899 -26.20020 -24.07210 -22.76752 -22.07547 -21.13678 -20.01774 -19.18688 -18.91971 -18.65836 -17.73147 -17.24614 -17.09258 -16.61353 -16.55547 -16.20254 -15.82594 -15.73485 -15.49352 -15.45949 -14.74056 -14.69949 -14.64546 -14.33635 -14.05126 -13.64663 -13.57231 -13.38767 -13.24083 -12.98605 -12.79563 -12.65208 -12.53859 -12.38217 -12.13490 -12.07622 -11.99295 -11.66244 -11.44863 -11.25981 -11.08629 -11.00678 -10.97512 -10.44795 -10.00032 -9.43779 -9.12560 -9.11340 -8.49416 -6.15766 1.04046 1.18060 1.24647 1.36195 1.38500 1.49394 1.53337 1.88963 2.21478 2.24050 2.64574 2.87945 3.02511 3.18799 3.34553 3.55698 3.63352 3.82245 4.04641 4.18893 4.29381 4.30373 4.39448 4.43900 4.45683 4.54175 4.57636 4.62490 4.68201 4.76213 4.76983 4.82190 4.86703 4.92750 5.03501 5.11586 5.26112 5.30496 5.41448 5.55896 5.62505 5.74610 5.85913 6.12285 6.14385 6.27848 6.28486 6.37021 6.53943 6.64669 6.83973 6.86596 7.11409 7.19427 8.47497 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.004723 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.201933 B = 5926.741516 C = 6870.192534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.216 4.216 3 C 0.217 3.783 4 N -0.568 5.568 5 C 0.480 3.520 6 O -0.581 6.581 7 C 0.059 3.941 8 O -0.367 6.367 9 C 0.067 3.933 10 C 0.108 3.892 11 C 0.012 3.988 12 N -0.477 5.477 13 C 0.102 3.898 14 C -0.191 4.191 15 C -0.090 4.090 16 C -0.242 4.242 17 C -0.118 4.118 18 C -0.192 4.192 19 C 0.103 3.897 20 C -0.454 4.454 21 H 0.074 0.926 22 C 0.040 3.960 23 N -0.832 5.832 24 Si 0.958 3.042 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.272 1.272 28 C 0.003 3.997 29 H 0.243 0.757 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.278 0.722 45 H 0.110 0.890 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 8.417 13.704 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.217 4.217 3 C 0.095 3.905 4 N -0.298 5.298 5 C 0.270 3.730 6 O -0.462 6.462 7 C -0.020 4.020 8 O -0.285 6.285 9 C -0.010 4.010 10 C 0.021 3.979 11 C -0.118 4.118 12 N -0.200 5.200 13 C -0.025 4.025 14 C -0.192 4.192 15 C -0.109 4.109 16 C -0.262 4.262 17 C -0.137 4.137 18 C -0.212 4.212 19 C 0.101 3.899 20 C -0.484 4.484 21 H 0.092 0.908 22 C -0.173 4.173 23 N -0.460 5.460 24 Si 0.782 3.218 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.197 1.197 28 C -0.127 4.127 29 H 0.259 0.741 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.167 0.833 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.474 7.084 13.483 15.622 hybrid contribution -0.362 -0.700 -0.815 1.134 sum 3.111 6.384 12.667 14.522 Atomic orbital electron populations 1.25573 0.96722 0.99562 0.99677 1.23743 0.95476 1.01289 1.01215 1.18314 0.83955 0.93694 0.94540 1.47321 1.63446 1.09754 1.09240 1.22087 0.76683 0.89918 0.84306 1.90716 1.54154 1.19780 1.81522 1.22837 1.02853 0.84093 0.92185 1.88171 1.44184 1.38367 1.57741 1.23235 0.96789 0.95428 0.85595 1.22546 0.97389 0.81587 0.96391 1.24190 0.96962 1.00734 0.89867 1.68681 1.03957 1.42652 1.04663 1.21050 0.96250 0.93100 0.92139 1.19817 0.99643 0.99370 1.00406 1.20727 0.94092 0.97811 0.98223 1.20677 1.01727 1.01157 1.02610 1.20912 0.98034 0.95508 0.99230 1.21271 0.98639 0.99344 1.01915 1.17677 0.91884 0.91668 0.88701 1.19521 0.96509 0.93543 1.38817 0.90790 1.26453 0.97391 1.00821 0.92681 1.69898 1.19662 1.20068 1.36366 0.85504 0.79895 0.78148 0.78302 1.17931 1.20283 1.19707 1.24463 0.95038 1.03349 0.89827 0.74076 0.86101 0.89907 0.83491 0.86863 0.89964 0.83332 0.91454 0.87898 0.92498 0.92061 0.86358 0.87138 0.88489 0.89263 0.91208 0.87213 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.75 19.24 74.32 1.43 -5.32 16 2 C -0.22 -8.17 11.73 31.12 0.37 -7.80 16 3 C 0.22 7.92 5.22 84.57 0.44 8.36 16 4 N -0.57 -16.70 2.62 -795.92 -2.09 -18.79 16 5 C 0.48 13.69 7.63 87.60 0.67 14.36 16 6 O -0.58 -21.20 16.45 -3.02 -0.05 -21.25 16 7 C 0.06 1.08 6.94 71.10 0.49 1.57 16 8 O -0.37 -6.42 10.84 -148.98 -1.61 -8.04 16 9 C 0.07 1.02 6.09 71.91 0.44 1.46 16 10 C 0.11 2.52 1.56 5.16 0.01 2.53 16 11 C 0.01 0.33 6.39 86.24 0.55 0.88 16 12 N -0.48 -15.45 4.23 -918.81 -3.88 -19.34 16 13 C 0.10 3.46 4.21 85.56 0.36 3.82 16 14 C -0.19 -8.11 5.16 -19.40 -0.10 -8.21 16 15 C -0.09 -3.51 9.65 22.22 0.21 -3.30 16 16 C -0.24 -10.01 10.05 22.46 0.23 -9.78 16 17 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 18 C -0.19 -10.03 8.66 22.73 0.20 -9.83 16 19 C 0.10 5.23 5.53 -21.29 -0.12 5.11 16 20 C -0.45 -23.13 8.35 23.46 0.20 -22.93 16 21 H 0.07 3.68 6.65 -2.91 -0.02 3.66 16 22 C 0.04 2.00 5.20 85.26 0.44 2.44 16 23 N -0.83 -44.50 11.01 21.83 0.24 -44.26 16 24 Si 0.96 39.69 29.58 68.60 2.03 41.72 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 C 0.00 0.07 7.11 86.25 0.61 0.68 16 29 H 0.24 6.23 7.80 -4.41 -0.03 6.20 16 30 H 0.12 4.96 6.03 -2.38 -0.01 4.94 16 31 H 0.08 3.19 7.29 -2.39 -0.02 3.17 16 32 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.06 8.13 -2.39 -0.02 1.04 16 35 H 0.15 1.41 7.86 -2.38 -0.02 1.39 16 36 H 0.07 2.32 6.01 -2.39 -0.01 2.31 16 37 H 0.10 2.26 7.64 -2.39 -0.02 2.24 16 38 H 0.06 1.54 7.50 -2.39 -0.02 1.52 16 39 H 0.06 2.23 7.01 -2.39 -0.02 2.21 16 40 H 0.12 3.72 8.00 -2.91 -0.02 3.70 16 41 H 0.11 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.10 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.09 5.01 6.34 -2.91 -0.02 4.99 16 44 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 45 H 0.11 1.98 7.64 -2.38 -0.02 1.96 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.85 377.50 2.28 -65.57 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 1.00 Total: 35.60 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 6.65 Total: -31.22 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -5.73 Total: -82.38 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.66 Total: -29.29 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -67.85 2.28 -65.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274347891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.672 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds