Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 H 1.09000 * 109.46695 * 305.00082 * 3 2 1 5 5 C 1.52998 * 109.47188 * 64.99670 * 3 2 1 6 6 C 1.50699 * 109.47141 * 184.99886 * 3 2 1 7 7 O 1.21277 * 120.00215 * 359.97438 * 6 3 2 8 8 N 1.34785 * 119.99725 * 179.97438 * 6 3 2 9 9 C 1.46998 * 121.37573 * 0.02562 * 8 6 3 10 10 C 1.50320 * 109.16741 * 222.92704 * 9 8 6 11 11 C 1.29454 * 123.65067 * 349.02188 * 10 9 8 12 12 C 1.50699 * 117.69727 * 180.57895 * 11 10 9 13 13 N 1.46494 * 109.47612 * 94.99632 * 12 11 10 14 14 C 1.34770 * 120.00166 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00444 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00124 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47517 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00435 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99313 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00113 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99640 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99945 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47312 * 90.00068 * 22 20 18 24 24 H 1.48503 * 109.46905 * 210.00362 * 22 20 18 25 25 H 1.48506 * 109.47296 * 329.99980 * 22 20 18 26 26 C 1.49975 * 124.61020 * 0.85631 * 11 10 9 27 27 C 1.47337 * 121.37355 * 179.97438 * 8 6 3 28 28 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47048 * 300.00503 * 1 2 3 30 30 H 1.09003 * 109.46975 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47048 * 239.99497 * 2 1 3 32 32 H 1.09008 * 109.47162 * 119.99819 * 2 1 3 33 33 H 1.09000 * 109.47384 * 60.00241 * 5 3 2 34 34 H 1.09001 * 109.47013 * 180.02562 * 5 3 2 35 35 H 1.09006 * 109.47051 * 299.99946 * 5 3 2 36 36 H 1.08997 * 109.52832 * 103.01583 * 9 8 6 37 37 H 1.09010 * 109.52362 * 342.83223 * 9 8 6 38 38 H 1.07996 * 118.17901 * 168.99913 * 10 9 8 39 39 H 1.09006 * 109.46935 * 215.00189 * 12 11 10 40 40 H 1.08998 * 109.46995 * 334.99432 * 12 11 10 41 41 H 0.96999 * 120.00063 * 0.02562 * 13 12 11 42 42 H 1.09006 * 109.47110 * 299.99876 * 16 14 13 43 43 H 1.08998 * 109.47461 * 59.99512 * 16 14 13 44 44 H 0.97007 * 119.99723 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.31398 * 101.29419 * 26 11 10 46 46 H 1.09000 * 109.31232 * 220.72386 * 26 11 10 47 47 H 1.08996 * 109.78111 * 237.83576 * 27 8 6 48 48 H 1.09005 * 109.77626 * 358.58651 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1451 0.3951 -0.2037 8 7 4.2150 2.6118 -0.1458 9 6 3.5147 3.9007 -0.0505 10 6 4.1098 4.8603 -1.0427 11 6 5.2077 4.6337 -1.6901 12 6 5.6901 5.6956 -2.6444 13 7 6.6613 6.5572 -1.9659 14 6 7.2303 7.5835 -2.6288 15 8 6.9387 7.7935 -3.7871 16 6 8.2299 8.4695 -1.9310 17 16 8.8080 9.7459 -3.0766 18 6 9.9300 10.6117 -2.0295 19 1 10.0751 10.2884 -1.0093 20 6 10.6263 11.7096 -2.5155 21 7 11.4648 12.3559 -1.7334 22 14 10.3746 12.2689 -4.2799 23 1 9.2697 13.2595 -4.3323 24 1 11.6240 12.8937 -4.7841 25 1 10.0304 11.0981 -5.1261 26 6 6.0303 3.3862 -1.5618 27 6 5.6830 2.6488 -0.2652 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0698 1.5876 2.1492 34 1 1.9983 3.1544 1.3071 35 1 0.5489 2.1253 1.3968 36 1 3.6262 4.3024 0.9566 37 1 2.4568 3.7578 -0.2714 38 1 3.5925 5.7904 -1.2261 39 1 6.1628 5.2228 -3.5053 40 1 4.8435 6.2953 -2.9787 41 1 6.8949 6.3892 -1.0396 42 1 7.7576 8.9419 -1.0696 43 1 9.0766 7.8697 -1.5974 44 1 11.9518 13.1230 -2.0732 45 1 5.8312 2.7341 -2.4121 46 1 7.0876 3.6509 -1.5538 47 1 6.1091 3.1791 0.5864 48 1 6.0759 1.6327 -0.3010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281365249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = -67.398223 kcal Electronic energy + Delta-G solvation = -26495.088675 eV Core-core repulsion = 22676.123586 eV Total energy + Delta-G solvation = -3818.965088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93469 -39.46061 -38.18670 -35.98655 -35.29084 -33.00614 -32.45659 -31.86348 -30.12514 -29.66011 -27.47685 -25.80687 -25.59410 -24.34501 -23.87957 -21.79212 -20.56409 -20.01291 -18.32637 -17.95695 -17.24627 -16.66444 -16.38586 -16.16186 -16.00240 -15.39298 -15.15633 -14.99853 -14.91974 -14.44459 -14.15886 -13.98388 -13.91101 -13.74914 -13.33573 -13.25209 -13.12095 -12.85467 -12.81334 -12.54430 -12.32074 -12.21287 -12.13897 -11.90851 -11.65379 -11.33592 -11.28669 -11.15435 -11.09090 -11.02427 -10.63456 -10.08044 -9.91041 -9.76627 -9.33131 -9.11184 -9.06237 -9.00213 -8.52415 -6.94139 -6.30750 -4.02735 1.53902 2.22684 2.48004 2.78860 2.93001 3.31027 3.37505 3.49116 3.69309 3.92481 4.13690 4.27237 4.31501 4.34869 4.40357 4.54822 4.59431 4.71798 4.79966 4.83576 4.88328 4.92317 5.00397 5.05072 5.08398 5.11463 5.22686 5.28014 5.29173 5.33702 5.38883 5.45190 5.49033 5.57164 5.62714 5.65444 5.73490 5.77193 5.87670 5.95412 5.98156 5.99696 6.39843 6.46554 6.96031 7.55879 7.74857 7.92242 8.39641 8.43989 9.15433 10.78441 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034389 B = 0.001683 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.012401 B =16636.535420 C =16720.497805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.111 4.111 4 H 0.097 0.903 5 C -0.158 4.158 6 C 0.523 3.477 7 O -0.540 6.540 8 N -0.615 5.615 9 C 0.136 3.864 10 C -0.158 4.158 11 C -0.120 4.120 12 C 0.153 3.847 13 N -0.733 5.733 14 C 0.530 3.470 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.100 4.100 27 C 0.111 3.889 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.909 -23.070 7.098 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.115 0.885 5 C -0.215 4.215 6 C 0.312 3.688 7 O -0.416 6.416 8 N -0.349 5.349 9 C 0.014 3.986 10 C -0.178 4.178 11 C -0.121 4.121 12 C 0.029 3.971 13 N -0.387 5.387 14 C 0.316 3.684 15 O -0.394 6.394 16 C -0.274 4.274 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.138 4.138 27 C -0.011 4.011 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.938 -23.145 5.126 32.299 hybrid contribution 0.569 0.368 1.109 1.300 sum -21.369 -22.778 6.236 31.849 Atomic orbital electron populations 1.21847 0.95338 1.02027 1.01923 1.21341 0.95459 0.93974 1.03513 1.21352 0.91606 0.99625 1.00639 0.88463 1.22097 1.02644 1.00944 0.95788 1.20700 0.90052 0.82799 0.75260 1.90696 1.70265 1.30920 1.49733 1.48203 1.07545 1.05839 1.73288 1.20797 0.96977 0.82228 0.98592 1.22407 0.97362 1.00164 0.97881 1.20836 0.96517 0.96273 0.98454 1.20351 0.92730 0.89903 0.94078 1.45989 1.45248 1.31395 1.16082 1.20314 0.81065 0.80145 0.86845 1.90707 1.61623 1.70330 1.16730 1.23276 1.00106 1.00509 1.03533 1.84798 1.54901 1.32829 1.19021 1.22316 1.27348 1.16732 1.00592 0.89386 1.24709 0.93551 0.94884 0.98124 1.69938 1.25703 1.19802 1.36195 0.86735 0.78612 0.81395 0.85105 1.19210 1.19916 1.15934 1.20771 1.00078 0.94353 0.98586 1.21702 0.79684 1.02535 0.97224 0.92389 0.92381 0.92650 0.91144 0.91311 0.91986 0.91265 0.90985 0.89788 0.88263 0.85773 0.90979 0.91020 0.76620 0.88502 0.88441 0.91929 0.90031 0.89318 0.90751 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.67 37.16 0.36 -0.32 16 2 C -0.10 -0.67 4.75 -26.73 -0.13 -0.79 16 3 C -0.11 -0.65 1.92 -91.77 -0.18 -0.82 16 4 H 0.10 0.45 7.57 -51.93 -0.39 0.06 16 5 C -0.16 -0.64 8.52 37.16 0.32 -0.32 16 6 C 0.52 4.63 7.12 -10.98 -0.08 4.55 16 7 O -0.54 -6.83 15.41 5.56 0.09 -6.74 16 8 N -0.61 -4.49 2.97 -174.10 -0.52 -5.01 16 9 C 0.14 0.68 4.89 -5.11 -0.02 0.66 16 10 C -0.16 -0.99 9.47 -35.78 -0.34 -1.33 16 11 C -0.12 -0.92 5.22 -100.99 -0.53 -1.44 16 12 C 0.15 1.58 5.66 -5.20 -0.03 1.55 16 13 N -0.73 -8.66 5.55 -61.48 -0.34 -9.00 16 14 C 0.53 9.06 7.85 -10.99 -0.09 8.97 16 15 O -0.52 -10.97 15.86 5.55 0.09 -10.88 16 16 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 17 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 18 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 22 Si 0.86 21.65 27.74 -169.99 -4.71 16.93 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 26 C -0.10 -0.74 5.95 -28.15 -0.17 -0.91 16 27 C 0.11 0.82 6.51 -3.51 -0.02 0.80 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.21 6.56 -51.93 -0.34 -0.13 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.55 7.96 -51.93 -0.41 0.13 16 32 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.21 4.83 -51.93 -0.25 -0.04 16 35 H 0.07 0.21 6.57 -51.93 -0.34 -0.13 16 36 H 0.08 0.33 7.79 -51.93 -0.40 -0.07 16 37 H 0.10 0.34 5.27 -51.92 -0.27 0.07 16 38 H 0.12 0.72 7.73 -52.49 -0.41 0.31 16 39 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 40 H 0.07 0.79 7.78 -51.93 -0.40 0.38 16 41 H 0.40 3.69 8.46 -40.82 -0.35 3.34 16 42 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.85 7.07 -51.93 -0.37 0.48 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -35.71 395.52 -8.87 -44.58 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.74 Total: -1.27 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.47 Total: -3.43 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.08 Total: -39.60 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.17 Total: -17.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.71 -8.87 -44.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281365249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.819 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds