Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 H 1.09000 * 109.46695 * 305.00082 * 3 2 1 5 5 C 1.52998 * 109.47188 * 64.99670 * 3 2 1 6 6 C 1.50699 * 109.47141 * 184.99886 * 3 2 1 7 7 O 1.21277 * 120.00215 * 359.97438 * 6 3 2 8 8 N 1.34785 * 119.99725 * 179.97438 * 6 3 2 9 9 C 1.46998 * 121.37573 * 0.02562 * 8 6 3 10 10 C 1.50320 * 109.16741 * 222.92704 * 9 8 6 11 11 C 1.29454 * 123.65067 * 349.02188 * 10 9 8 12 12 C 1.50699 * 117.69727 * 180.57895 * 11 10 9 13 13 N 1.46494 * 109.47612 * 94.99632 * 12 11 10 14 14 C 1.34770 * 120.00166 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00444 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00124 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47517 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00435 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99313 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00113 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99640 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99945 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47312 * 90.00068 * 22 20 18 24 24 H 1.48503 * 109.46905 * 210.00362 * 22 20 18 25 25 H 1.48506 * 109.47296 * 329.99980 * 22 20 18 26 26 C 1.49975 * 124.61020 * 0.85631 * 11 10 9 27 27 C 1.47337 * 121.37355 * 179.97438 * 8 6 3 28 28 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47048 * 300.00503 * 1 2 3 30 30 H 1.09003 * 109.46975 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47048 * 239.99497 * 2 1 3 32 32 H 1.09008 * 109.47162 * 119.99819 * 2 1 3 33 33 H 1.09000 * 109.47384 * 60.00241 * 5 3 2 34 34 H 1.09001 * 109.47013 * 180.02562 * 5 3 2 35 35 H 1.09006 * 109.47051 * 299.99946 * 5 3 2 36 36 H 1.08997 * 109.52832 * 103.01583 * 9 8 6 37 37 H 1.09010 * 109.52362 * 342.83223 * 9 8 6 38 38 H 1.07996 * 118.17901 * 168.99913 * 10 9 8 39 39 H 1.09006 * 109.46935 * 215.00189 * 12 11 10 40 40 H 1.08998 * 109.46995 * 334.99432 * 12 11 10 41 41 H 0.96999 * 120.00063 * 0.02562 * 13 12 11 42 42 H 1.09006 * 109.47110 * 299.99876 * 16 14 13 43 43 H 1.08998 * 109.47461 * 59.99512 * 16 14 13 44 44 H 0.97007 * 119.99723 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.31398 * 101.29419 * 26 11 10 46 46 H 1.09000 * 109.31232 * 220.72386 * 26 11 10 47 47 H 1.08996 * 109.78111 * 237.83576 * 27 8 6 48 48 H 1.09005 * 109.77626 * 358.58651 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1451 0.3951 -0.2037 8 7 4.2150 2.6118 -0.1458 9 6 3.5147 3.9007 -0.0505 10 6 4.1098 4.8603 -1.0427 11 6 5.2077 4.6337 -1.6901 12 6 5.6901 5.6956 -2.6444 13 7 6.6613 6.5572 -1.9659 14 6 7.2303 7.5835 -2.6288 15 8 6.9387 7.7935 -3.7871 16 6 8.2299 8.4695 -1.9310 17 16 8.8080 9.7459 -3.0766 18 6 9.9300 10.6117 -2.0295 19 1 10.0751 10.2884 -1.0093 20 6 10.6263 11.7096 -2.5155 21 7 11.4648 12.3559 -1.7334 22 14 10.3746 12.2689 -4.2799 23 1 9.2697 13.2595 -4.3323 24 1 11.6240 12.8937 -4.7841 25 1 10.0304 11.0981 -5.1261 26 6 6.0303 3.3862 -1.5618 27 6 5.6830 2.6488 -0.2652 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0698 1.5876 2.1492 34 1 1.9983 3.1544 1.3071 35 1 0.5489 2.1253 1.3968 36 1 3.6262 4.3024 0.9566 37 1 2.4568 3.7578 -0.2714 38 1 3.5925 5.7904 -1.2261 39 1 6.1628 5.2228 -3.5053 40 1 4.8435 6.2953 -2.9787 41 1 6.8949 6.3892 -1.0396 42 1 7.7576 8.9419 -1.0696 43 1 9.0766 7.8697 -1.5974 44 1 11.9518 13.1230 -2.0732 45 1 5.8312 2.7341 -2.4121 46 1 7.0876 3.6509 -1.5538 47 1 6.1091 3.1791 0.5864 48 1 6.0759 1.6327 -0.3010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281365249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = -91.412853 kcal Electronic energy + Delta-G solvation = -26496.130027 eV Core-core repulsion = 22676.123586 eV Total energy + Delta-G solvation = -3820.006441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55550 -40.67741 -38.94836 -36.51875 -36.21737 -34.67032 -33.91745 -32.41148 -31.18676 -30.34382 -28.31790 -27.80839 -26.25378 -24.90855 -24.55517 -22.32234 -21.84689 -20.56784 -19.97006 -18.78292 -18.21995 -17.66056 -17.32415 -17.15042 -16.94275 -16.70857 -16.56386 -15.76701 -15.66533 -15.45361 -15.23769 -14.99228 -14.87072 -14.58647 -14.43620 -14.27056 -14.01216 -13.64970 -13.62037 -13.34664 -13.19464 -13.12108 -12.99151 -12.77047 -12.72011 -12.60537 -12.54397 -12.18755 -11.88128 -11.82405 -11.65152 -11.58164 -11.16772 -11.11858 -10.73206 -10.53103 -10.15956 -10.02580 -9.71739 -8.99168 -8.51247 -6.21985 0.85955 1.08032 1.31661 1.48167 1.56511 1.58650 1.59761 1.93128 2.24893 2.39330 2.74430 2.87203 3.39746 3.54742 3.73937 3.83940 3.89633 3.97366 4.02255 4.11241 4.23508 4.29693 4.38618 4.45485 4.48142 4.51648 4.55310 4.60690 4.61852 4.73362 4.74624 4.75687 4.84955 4.96842 5.00398 5.03845 5.13663 5.21153 5.34166 5.37832 5.40762 5.41304 5.51492 5.70985 5.83259 6.11788 6.38471 6.46803 6.94131 7.11817 7.18743 8.61044 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034389 B = 0.001683 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.012401 B =16636.535420 C =16720.497805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.106 4.106 4 H 0.116 0.884 5 C -0.154 4.154 6 C 0.515 3.485 7 O -0.589 6.589 8 N -0.613 5.613 9 C 0.131 3.869 10 C -0.135 4.135 11 C -0.134 4.134 12 C 0.157 3.843 13 N -0.706 5.706 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.111 4.111 17 S -0.177 6.177 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.237 1.237 26 C -0.093 4.093 27 C 0.110 3.890 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.416 0.584 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.277 0.723 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.293 -22.971 7.688 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.127 4.127 4 H 0.134 0.866 5 C -0.211 4.211 6 C 0.305 3.695 7 O -0.469 6.469 8 N -0.346 5.346 9 C 0.010 3.990 10 C -0.155 4.155 11 C -0.135 4.135 12 C 0.034 3.966 13 N -0.360 5.360 14 C 0.321 3.679 15 O -0.443 6.443 16 C -0.262 4.262 17 S 0.049 5.951 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.184 1.184 25 H -0.161 1.161 26 C -0.131 4.131 27 C -0.012 4.012 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.337 -23.051 5.766 34.013 hybrid contribution 1.236 0.207 1.058 1.640 sum -23.101 -22.844 6.824 33.198 Atomic orbital electron populations 1.21815 0.93519 1.02348 1.02911 1.21310 0.96948 0.94305 1.01744 1.21394 0.89287 0.99556 1.02469 0.86628 1.22105 1.03713 1.01242 0.93996 1.21322 0.91332 0.82445 0.74374 1.90673 1.71414 1.32724 1.52077 1.48312 1.07552 1.06450 1.72287 1.21121 0.97830 0.80664 0.99396 1.22640 0.96066 1.00482 0.96294 1.20553 0.97702 0.95712 0.99549 1.20388 0.91881 0.90020 0.94342 1.45774 1.44079 1.29545 1.16559 1.19964 0.80873 0.80895 0.86182 1.90698 1.63246 1.71823 1.18517 1.23270 1.01356 0.99113 1.02428 1.84727 1.54299 1.35056 1.20978 1.22468 1.28008 1.17145 1.00087 0.91905 1.25551 0.93362 0.95089 1.01907 1.70016 1.26746 1.20605 1.38081 0.85872 0.79141 0.80898 0.80490 1.18636 1.18419 1.16138 1.20659 1.00260 0.94107 0.98028 1.21677 0.80142 1.01623 0.97782 0.92530 0.91071 0.91850 0.93317 0.92831 0.93128 0.89727 0.89275 0.87478 0.85892 0.84460 0.92255 0.91165 0.74698 0.86692 0.86880 0.91389 0.91385 0.89173 0.89250 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 71.98 0.70 -0.36 16 2 C -0.10 -1.29 4.75 30.59 0.15 -1.14 16 3 C -0.11 -1.03 1.92 -11.54 -0.02 -1.05 16 4 H 0.12 0.71 7.57 -2.39 -0.02 0.69 16 5 C -0.15 -0.76 8.52 71.98 0.61 -0.15 16 6 C 0.52 8.69 7.12 87.66 0.62 9.32 16 7 O -0.59 -15.44 15.41 -3.02 -0.05 -15.48 16 8 N -0.61 -7.77 2.97 -823.12 -2.44 -10.21 16 9 C 0.13 0.79 4.89 85.42 0.42 1.21 16 10 C -0.14 -1.19 9.47 27.11 0.26 -0.94 16 11 C -0.13 -1.73 5.22 -15.14 -0.08 -1.80 16 12 C 0.16 2.93 5.66 85.63 0.48 3.42 16 13 N -0.71 -15.01 5.55 -466.80 -2.59 -17.60 16 14 C 0.54 17.41 7.85 87.66 0.69 18.10 16 15 O -0.56 -23.39 15.86 -3.04 -0.05 -23.44 16 16 C -0.11 -4.00 6.16 71.24 0.44 -3.56 16 17 S -0.18 -8.80 18.55 -56.49 -1.05 -9.85 16 18 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 20 C 0.05 2.70 5.50 84.86 0.47 3.16 16 21 N -0.92 -55.37 13.97 21.65 0.30 -55.06 16 22 Si 0.91 44.64 27.74 68.60 1.90 46.54 16 23 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 26 C -0.09 -1.26 5.95 29.67 0.18 -1.09 16 27 C 0.11 1.52 6.51 86.27 0.56 2.08 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.33 6.56 -2.39 -0.02 0.31 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.79 7.96 -2.39 -0.02 0.77 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.15 4.83 -2.39 -0.01 0.14 16 35 H 0.09 0.18 6.57 -2.38 -0.02 0.16 16 36 H 0.11 0.30 7.79 -2.39 -0.02 0.28 16 37 H 0.12 0.24 5.27 -2.38 -0.01 0.23 16 38 H 0.14 0.96 7.73 -2.91 -0.02 0.94 16 39 H 0.06 1.30 8.11 -2.38 -0.02 1.28 16 40 H 0.07 1.39 7.78 -2.39 -0.02 1.37 16 41 H 0.42 6.34 8.46 -92.71 -0.78 5.56 16 42 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 44 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.08 1.40 7.07 -2.38 -0.02 1.38 16 Total: -1.00 -79.78 395.52 2.32 -77.46 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.14 Total: 10.24 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.15 Total: -2.59 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -4.73 Total: -82.88 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.09 Total: -38.92 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -79.78 2.32 -77.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281365249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.953 kcal (2) G-P(sol) polarization free energy of solvation -79.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds