Wall clock time and date at job start Sat Apr 11 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47320 * 2 1 4 4 H 1.08997 * 115.55932 * 29.30693 * 3 2 1 5 5 C 1.53004 * 117.49644 * 243.62144 * 3 2 1 6 6 C 1.52994 * 117.49856 * 174.99775 * 3 2 1 7 7 H 1.09004 * 117.52088 * 0.02562 * 6 3 2 8 8 C 1.50706 * 117.50138 * 214.97694 * 6 3 2 9 9 O 1.21280 * 119.99330 * 359.97438 * 8 6 3 10 10 N 1.34769 * 120.00080 * 179.97438 * 8 6 3 11 11 C 1.46505 * 120.00411 * 359.97438 * 10 8 6 12 12 C 1.46507 * 119.99643 * 180.02562 * 10 8 6 13 13 H 1.08994 * 110.88526 * 3.88074 * 12 10 8 14 14 C 1.55159 * 111.00048 * 239.99810 * 12 10 8 15 15 C 1.54324 * 102.94134 * 206.38642 * 14 12 10 16 16 N 1.47020 * 107.39983 * 22.11770 * 15 14 12 17 17 C 1.34780 * 125.64983 * 181.10309 * 16 15 14 18 18 O 1.21276 * 120.00190 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99770 * 0.02562 * 17 16 15 20 20 S 1.80993 * 109.47192 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00296 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99858 * 0.02562 * 21 20 19 23 23 C 1.38794 * 120.00411 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99992 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00055 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47332 * 60.00287 * 25 23 21 27 27 H 1.48502 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47088 * 300.00056 * 25 23 21 29 29 C 1.47743 * 108.53125 * 1.18235 * 16 15 14 30 30 H 1.08996 * 109.47458 * 300.00502 * 1 2 3 31 31 H 1.09009 * 109.46888 * 59.99889 * 1 2 3 32 32 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47132 * 239.99791 * 2 1 3 34 34 H 1.08996 * 109.46878 * 119.99819 * 2 1 3 35 35 H 1.08997 * 117.49444 * 145.02213 * 5 3 2 36 36 H 1.08999 * 117.49791 * 359.97438 * 5 3 2 37 37 H 1.08988 * 109.47103 * 270.00242 * 11 10 8 38 38 H 1.08999 * 109.46487 * 30.00363 * 11 10 8 39 39 H 1.08996 * 109.46765 * 149.99992 * 11 10 8 40 40 H 1.09004 * 110.72010 * 88.02432 * 14 12 10 41 41 H 1.08999 * 110.72303 * 324.75041 * 14 12 10 42 42 H 1.09002 * 109.88322 * 141.61300 * 15 14 12 43 43 H 1.09000 * 109.88025 * 262.62465 * 15 14 12 44 44 H 1.08992 * 109.47408 * 300.00360 * 19 17 16 45 45 H 1.09005 * 109.47188 * 60.00318 * 19 17 16 46 46 H 0.97002 * 120.00459 * 180.02562 * 24 23 21 47 47 H 1.09003 * 110.29227 * 216.94505 * 29 16 15 48 48 H 1.08996 * 110.53057 * 94.67717 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8441 1.9075 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 4.1807 0.7720 0.1958 8 6 4.0229 2.8620 0.8914 9 8 3.2158 3.6169 1.3910 10 7 5.3425 3.0998 1.0276 11 6 6.3174 2.1875 0.4246 12 6 5.8020 4.2702 1.7797 13 1 4.9600 4.8046 2.2195 14 6 6.6498 5.2100 0.8823 15 6 7.5621 5.9282 1.8989 16 7 7.6320 5.0837 3.1003 17 6 8.3147 5.3736 4.2257 18 8 8.3021 4.5993 5.1590 19 6 9.0936 6.6599 4.3242 20 16 9.8949 6.7575 5.9442 21 6 10.7094 8.3123 5.7896 22 1 10.6145 8.8833 4.8778 23 6 11.4721 8.8037 6.8399 24 7 11.5866 8.1085 7.9517 25 14 12.3350 10.4523 6.6762 26 1 11.3277 11.5166 6.4358 27 1 13.0792 10.7478 7.9268 28 1 13.2846 10.4029 5.5356 29 6 6.8306 3.8650 2.8648 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7214 2.9427 -1.5344 36 1 3.0100 1.1856 -2.0155 37 1 6.5706 1.4033 1.1379 38 1 5.8891 1.7390 -0.4717 39 1 7.2176 2.7417 0.1591 40 1 6.0125 5.9259 0.3631 41 1 7.2426 4.6338 0.1720 42 1 8.5590 6.0558 1.4769 43 1 7.1402 6.9005 2.1533 44 1 9.8521 6.6863 3.5419 45 1 8.4162 7.5052 4.2020 46 1 12.1193 8.4520 8.6860 47 1 6.3189 3.5665 3.7798 48 1 7.4639 3.0548 2.5036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283369471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:28 Heat of formation + Delta-G solvation = -45.168792 kcal Electronic energy + Delta-G solvation = -26660.626210 eV Core-core repulsion = 22842.625062 eV Total energy + Delta-G solvation = -3818.001148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83424 -39.63530 -37.94477 -36.97675 -35.27850 -32.53709 -32.42959 -31.29149 -29.71459 -28.39315 -27.25246 -25.53382 -25.04099 -24.17592 -23.21231 -21.37247 -20.72880 -19.44182 -19.25696 -17.88728 -17.72560 -16.93929 -16.52232 -15.78914 -15.59589 -15.12775 -14.95371 -14.93081 -14.80093 -14.40411 -14.15712 -13.81601 -13.72604 -13.43829 -13.07409 -13.01377 -12.84579 -12.63364 -12.58147 -12.54838 -12.53320 -12.01214 -11.88082 -11.75646 -11.70073 -11.47676 -11.04697 -11.04275 -11.01805 -10.77471 -10.74964 -10.46550 -10.10404 -9.83027 -9.46379 -9.08414 -9.05795 -8.54079 -8.24355 -6.50665 -6.21369 -3.92443 2.09389 2.37278 2.95988 3.03809 3.23646 3.26194 3.29439 3.36340 3.60654 3.94800 4.19508 4.24436 4.27492 4.29564 4.36916 4.57543 4.66761 4.71171 4.73877 4.88804 4.90730 4.97737 4.99029 5.05636 5.09150 5.13649 5.18754 5.28104 5.32731 5.43960 5.46976 5.51007 5.54572 5.59066 5.64626 5.65030 5.70948 5.75224 5.77982 5.91902 5.93574 6.06492 6.13205 6.36723 6.96166 7.58799 7.61282 7.80944 8.34988 8.51609 9.23613 10.86009 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033693 B = 0.001758 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.841966 B =15919.494782 C =16174.308604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.192 4.192 7 H 0.125 0.875 8 C 0.547 3.453 9 O -0.536 6.536 10 N -0.603 5.603 11 C 0.072 3.928 12 C 0.127 3.873 13 H 0.118 0.882 14 C -0.141 4.141 15 C 0.104 3.896 16 N -0.626 5.626 17 C 0.550 3.450 18 O -0.514 6.514 19 C -0.146 4.146 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C 0.102 3.898 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.082 0.918 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.741 -14.914 -23.735 32.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.213 4.213 7 H 0.143 0.857 8 C 0.335 3.665 9 O -0.412 6.412 10 N -0.335 5.335 11 C -0.070 4.070 12 C 0.023 3.977 13 H 0.136 0.864 14 C -0.180 4.180 15 C -0.020 4.020 16 N -0.364 5.364 17 C 0.339 3.661 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.046 -15.653 -21.798 31.792 hybrid contribution 0.876 1.942 -1.247 2.469 sum -16.170 -13.711 -23.046 31.314 Atomic orbital electron populations 1.21743 0.95066 1.01738 1.02224 1.21160 0.96406 0.93479 1.02198 1.22513 0.91259 0.98899 1.00880 0.86361 1.23113 1.01948 1.03218 0.90203 1.22320 0.97874 0.98846 1.02221 0.85708 1.19729 0.81575 0.85537 0.79633 1.90709 1.53438 1.48642 1.48449 1.47574 1.05891 1.26421 1.53651 1.21868 0.93134 0.93626 0.98408 1.22237 0.97632 0.86183 0.91672 0.86442 1.23017 0.98148 0.99067 0.97724 1.21967 1.00156 0.94794 0.85084 1.48462 1.51290 1.21341 1.15308 1.20053 0.78123 0.87830 0.80092 1.90714 1.61390 1.50191 1.36425 1.23505 1.01955 0.96341 1.07881 1.85409 1.60667 1.27569 1.09693 1.22819 1.35722 1.05645 1.04265 0.90958 1.24986 0.95882 0.98204 0.94443 1.70007 1.38246 1.37719 1.04287 0.86220 0.79341 0.82236 0.77680 1.19927 1.20793 1.19945 1.22399 0.92548 0.88339 0.98978 0.92405 0.92518 0.92549 0.91634 0.91320 0.88266 0.87714 0.92096 0.90461 0.90470 0.89491 0.90006 0.90860 0.90844 0.89231 0.89184 0.92112 0.89959 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.87 37.16 0.37 -0.39 16 2 C -0.10 -0.49 6.22 -26.73 -0.17 -0.66 16 3 C -0.12 -0.80 5.25 -90.62 -0.48 -1.28 16 4 H 0.12 1.05 7.60 -51.93 -0.39 0.65 16 5 C -0.15 -0.82 9.88 -26.73 -0.26 -1.09 16 6 C -0.19 -1.32 4.52 -91.77 -0.41 -1.74 16 7 H 0.13 0.62 7.26 -51.93 -0.38 0.25 16 8 C 0.55 5.58 7.46 -10.99 -0.08 5.50 16 9 O -0.54 -7.59 15.64 5.56 0.09 -7.51 16 10 N -0.60 -5.23 2.91 -171.48 -0.50 -5.73 16 11 C 0.07 0.39 8.62 59.85 0.52 0.91 16 12 C 0.13 1.30 3.45 -65.78 -0.23 1.08 16 13 H 0.12 1.46 7.02 -51.93 -0.36 1.10 16 14 C -0.14 -1.16 6.51 -24.90 -0.16 -1.32 16 15 C 0.10 1.10 6.48 -3.06 -0.02 1.08 16 16 N -0.63 -9.14 3.34 -170.26 -0.57 -9.70 16 17 C 0.55 10.79 7.87 -10.98 -0.09 10.71 16 18 O -0.51 -12.13 16.13 5.56 0.09 -12.04 16 19 C -0.15 -3.02 5.35 36.01 0.19 -2.83 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 22 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 25 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 C 0.10 1.26 6.48 -2.35 -0.02 1.25 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.27 7.88 -51.93 -0.41 -0.14 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.38 8.03 -51.93 -0.42 -0.04 16 37 H 0.06 0.31 8.09 -51.94 -0.42 -0.11 16 38 H 0.08 0.27 6.64 -51.93 -0.34 -0.07 16 39 H 0.08 0.37 6.42 -51.93 -0.33 0.04 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.55 6.40 -51.93 -0.33 0.21 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 48 H 0.07 0.78 7.00 -51.93 -0.36 0.41 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -36.52 403.54 -9.90 -46.41 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.95 Total: -2.73 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.64 Total: -1.81 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.33 Total: -40.96 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.52 -9.90 -46.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283369471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.244 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds