Wall clock time and date at job start Sat Apr 11 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47320 * 2 1 4 4 H 1.08997 * 115.55932 * 29.30693 * 3 2 1 5 5 C 1.53004 * 117.49644 * 243.62144 * 3 2 1 6 6 C 1.52994 * 117.49856 * 174.99775 * 3 2 1 7 7 H 1.09004 * 117.52088 * 0.02562 * 6 3 2 8 8 C 1.50706 * 117.50138 * 214.97694 * 6 3 2 9 9 O 1.21280 * 119.99330 * 359.97438 * 8 6 3 10 10 N 1.34769 * 120.00080 * 179.97438 * 8 6 3 11 11 C 1.46505 * 120.00411 * 359.97438 * 10 8 6 12 12 C 1.46507 * 119.99643 * 180.02562 * 10 8 6 13 13 H 1.08994 * 110.88526 * 3.88074 * 12 10 8 14 14 C 1.55159 * 111.00048 * 239.99810 * 12 10 8 15 15 C 1.54324 * 102.94134 * 206.38642 * 14 12 10 16 16 N 1.47020 * 107.39983 * 22.11770 * 15 14 12 17 17 C 1.34780 * 125.64983 * 181.10309 * 16 15 14 18 18 O 1.21276 * 120.00190 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99770 * 0.02562 * 17 16 15 20 20 S 1.80993 * 109.47192 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00296 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99858 * 0.02562 * 21 20 19 23 23 C 1.38794 * 120.00411 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99992 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00055 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47332 * 60.00287 * 25 23 21 27 27 H 1.48502 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47088 * 300.00056 * 25 23 21 29 29 C 1.47743 * 108.53125 * 1.18235 * 16 15 14 30 30 H 1.08996 * 109.47458 * 300.00502 * 1 2 3 31 31 H 1.09009 * 109.46888 * 59.99889 * 1 2 3 32 32 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47132 * 239.99791 * 2 1 3 34 34 H 1.08996 * 109.46878 * 119.99819 * 2 1 3 35 35 H 1.08997 * 117.49444 * 145.02213 * 5 3 2 36 36 H 1.08999 * 117.49791 * 359.97438 * 5 3 2 37 37 H 1.08988 * 109.47103 * 270.00242 * 11 10 8 38 38 H 1.08999 * 109.46487 * 30.00363 * 11 10 8 39 39 H 1.08996 * 109.46765 * 149.99992 * 11 10 8 40 40 H 1.09004 * 110.72010 * 88.02432 * 14 12 10 41 41 H 1.08999 * 110.72303 * 324.75041 * 14 12 10 42 42 H 1.09002 * 109.88322 * 141.61300 * 15 14 12 43 43 H 1.09000 * 109.88025 * 262.62465 * 15 14 12 44 44 H 1.08992 * 109.47408 * 300.00360 * 19 17 16 45 45 H 1.09005 * 109.47188 * 60.00318 * 19 17 16 46 46 H 0.97002 * 120.00459 * 180.02562 * 24 23 21 47 47 H 1.09003 * 110.29227 * 216.94505 * 29 16 15 48 48 H 1.08996 * 110.53057 * 94.67717 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8441 1.9075 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 4.1807 0.7720 0.1958 8 6 4.0229 2.8620 0.8914 9 8 3.2158 3.6169 1.3910 10 7 5.3425 3.0998 1.0276 11 6 6.3174 2.1875 0.4246 12 6 5.8020 4.2702 1.7797 13 1 4.9600 4.8046 2.2195 14 6 6.6498 5.2100 0.8823 15 6 7.5621 5.9282 1.8989 16 7 7.6320 5.0837 3.1003 17 6 8.3147 5.3736 4.2257 18 8 8.3021 4.5993 5.1590 19 6 9.0936 6.6599 4.3242 20 16 9.8949 6.7575 5.9442 21 6 10.7094 8.3123 5.7896 22 1 10.6145 8.8833 4.8778 23 6 11.4721 8.8037 6.8399 24 7 11.5866 8.1085 7.9517 25 14 12.3350 10.4523 6.6762 26 1 11.3277 11.5166 6.4358 27 1 13.0792 10.7478 7.9268 28 1 13.2846 10.4029 5.5356 29 6 6.8306 3.8650 2.8648 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7214 2.9427 -1.5344 36 1 3.0100 1.1856 -2.0155 37 1 6.5706 1.4033 1.1379 38 1 5.8891 1.7390 -0.4717 39 1 7.2176 2.7417 0.1591 40 1 6.0125 5.9259 0.3631 41 1 7.2426 4.6338 0.1720 42 1 8.5590 6.0558 1.4769 43 1 7.1402 6.9005 2.1533 44 1 9.8521 6.6863 3.5419 45 1 8.4162 7.5052 4.2020 46 1 12.1193 8.4520 8.6860 47 1 6.3189 3.5665 3.7798 48 1 7.4639 3.0548 2.5036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283369471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:28 Heat of formation + Delta-G solvation = -68.504200 kcal Electronic energy + Delta-G solvation = -26661.638109 eV Core-core repulsion = 22842.625062 eV Total energy + Delta-G solvation = -3819.013047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67546 -40.78526 -38.93697 -37.81582 -36.19513 -34.59556 -33.06376 -32.40344 -30.90492 -29.51931 -27.88199 -27.65531 -25.83712 -24.67507 -24.15694 -22.05224 -21.30551 -20.80299 -20.01635 -19.60338 -18.60725 -18.18844 -17.58389 -16.89417 -16.83014 -16.57912 -16.34858 -15.77611 -15.58705 -15.50815 -15.24840 -14.97306 -14.64439 -14.44008 -14.13773 -14.06118 -13.81130 -13.54915 -13.47361 -13.36074 -13.17324 -13.09535 -12.96312 -12.86998 -12.79546 -12.64700 -12.59511 -12.17783 -11.92365 -11.80308 -11.75717 -11.27046 -11.13500 -11.07696 -10.99090 -10.79337 -10.30667 -9.94196 -9.65773 -8.69874 -8.35195 -6.14613 1.17187 1.36004 1.42229 1.44020 1.49086 1.53422 1.73139 2.15606 2.26612 2.83471 2.98945 3.18131 3.32330 3.42450 3.55695 3.73688 3.84293 3.85988 3.89047 4.07842 4.12828 4.14443 4.23610 4.28817 4.32539 4.41855 4.48697 4.52761 4.56436 4.63582 4.70555 4.75906 4.79368 4.85502 4.94301 4.97280 4.99384 5.06554 5.15550 5.16460 5.23334 5.29779 5.40565 5.45939 5.50286 6.18649 6.25917 6.29498 7.02496 7.05651 7.06398 8.73886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033693 B = 0.001758 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.841966 B =15919.494782 C =16174.308604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.130 4.130 4 H 0.088 0.912 5 C -0.127 4.127 6 C -0.192 4.192 7 H 0.151 0.849 8 C 0.538 3.462 9 O -0.588 6.588 10 N -0.598 5.598 11 C 0.064 3.936 12 C 0.133 3.867 13 H 0.089 0.911 14 C -0.123 4.123 15 C 0.093 3.907 16 N -0.616 5.616 17 C 0.548 3.452 18 O -0.567 6.567 19 C -0.119 4.119 20 S -0.152 6.152 21 C -0.548 4.548 22 H 0.084 0.916 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.260 1.260 29 C 0.102 3.898 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.053 0.947 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.092 -14.928 -27.721 35.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.149 4.149 4 H 0.106 0.894 5 C -0.164 4.164 6 C -0.213 4.213 7 H 0.169 0.831 8 C 0.328 3.672 9 O -0.468 6.468 10 N -0.329 5.329 11 C -0.077 4.077 12 C 0.027 3.973 13 H 0.108 0.892 14 C -0.161 4.161 15 C -0.029 4.029 16 N -0.352 5.352 17 C 0.336 3.664 18 O -0.445 6.445 19 C -0.270 4.270 20 S 0.075 5.925 21 C -0.695 4.695 22 H 0.102 0.898 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.185 1.185 29 C -0.022 4.022 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.401 -15.685 -25.865 34.410 hybrid contribution 0.565 1.878 -0.086 1.963 sum -15.836 -13.807 -25.951 33.390 Atomic orbital electron populations 1.21754 0.95287 1.02178 1.01688 1.21147 0.96210 0.92312 1.03003 1.22492 0.90977 0.99375 1.02083 0.89366 1.23202 0.99766 1.03447 0.90034 1.22370 0.98048 0.98109 1.02754 0.83120 1.20397 0.81581 0.85937 0.79257 1.90688 1.54836 1.50588 1.50700 1.47659 1.06187 1.26257 1.52836 1.22174 0.92904 0.93303 0.99360 1.21968 0.96245 0.87244 0.91802 0.89250 1.22985 0.97505 0.98725 0.96927 1.22343 1.02031 0.94643 0.83869 1.48353 1.49385 1.22490 1.14966 1.19825 0.78593 0.87069 0.80867 1.90692 1.63599 1.51537 1.38678 1.23294 1.02319 0.97749 1.03612 1.85615 1.62215 1.28594 1.16058 1.23167 1.35820 1.05580 1.04954 0.89768 1.26143 0.96519 1.02606 0.93807 1.70181 1.39269 1.39991 1.05331 0.84985 0.78215 0.76599 0.78080 1.18717 1.20395 1.18455 1.22510 0.93001 0.88038 0.98669 0.93782 0.92296 0.91561 0.89587 0.91625 0.89242 0.84689 0.91654 0.87879 0.89181 0.88065 0.87316 0.88851 0.90382 0.86983 0.87555 0.91963 0.92870 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.87 71.98 0.71 -0.70 16 2 C -0.09 -0.78 6.22 30.60 0.19 -0.59 16 3 C -0.13 -1.68 5.25 -10.79 -0.06 -1.74 16 4 H 0.09 1.69 7.60 -2.39 -0.02 1.67 16 5 C -0.13 -1.10 9.88 30.60 0.30 -0.80 16 6 C -0.19 -2.28 4.52 -11.54 -0.05 -2.33 16 7 H 0.15 0.98 7.26 -2.39 -0.02 0.96 16 8 C 0.54 10.65 7.46 87.66 0.65 11.31 16 9 O -0.59 -17.40 15.64 -3.03 -0.05 -17.44 16 10 N -0.60 -9.37 2.91 -814.83 -2.37 -11.74 16 11 C 0.06 0.46 8.62 127.77 1.10 1.56 16 12 C 0.13 2.59 3.45 46.38 0.16 2.75 16 13 H 0.09 2.30 7.02 -2.39 -0.02 2.28 16 14 C -0.12 -1.63 6.51 31.78 0.21 -1.43 16 15 C 0.09 1.73 6.48 86.73 0.56 2.29 16 16 N -0.62 -17.46 3.34 -810.98 -2.71 -20.17 16 17 C 0.55 21.69 7.87 87.66 0.69 22.38 16 18 O -0.57 -27.93 16.13 -3.02 -0.05 -27.98 16 19 C -0.12 -4.87 5.35 71.24 0.38 -4.49 16 20 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 21 C -0.55 -31.47 9.50 67.95 0.65 -30.83 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 23 C 0.01 0.80 5.49 84.86 0.47 1.27 16 24 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 25 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 29 C 0.10 2.49 6.48 86.79 0.56 3.05 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.42 7.88 -2.39 -0.02 0.40 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.14 0.38 8.03 -2.39 -0.02 0.36 16 37 H 0.06 0.46 8.09 -2.39 -0.02 0.44 16 38 H 0.10 0.26 6.64 -2.39 -0.02 0.25 16 39 H 0.09 0.46 6.42 -2.39 -0.02 0.44 16 40 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.11 0.92 6.40 -2.39 -0.02 0.91 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 45 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 46 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 47 H 0.05 1.62 8.05 -2.39 -0.02 1.60 16 48 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 Total: -1.00 -85.20 403.54 3.44 -81.76 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.94 Total: 14.10 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 6.52 Total: 1.71 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -4.79 Total: -88.02 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.10 Total: -45.42 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -85.20 3.44 -81.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283369471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.252 kcal (2) G-P(sol) polarization free energy of solvation -85.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds