Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47303 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00031 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00072 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99532 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00526 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99657 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47055 * 60.00291 * 15 13 11 17 17 H 1.48505 * 109.47055 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47341 * 300.00198 * 15 13 11 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.34785 * 119.99572 * 85.00499 * 19 3 2 21 21 O 1.21605 * 120.00197 * 359.97438 * 20 19 3 22 22 C 1.47098 * 119.99756 * 179.97438 * 20 19 3 23 23 C 1.50699 * 120.00118 * 359.97438 * 22 20 19 24 24 C 1.32989 * 120.00164 * 180.02562 * 22 20 19 25 25 C 1.51411 * 136.31490 * 359.62762 * 24 22 20 26 26 C 1.53375 * 87.51713 * 206.06045 * 25 24 22 27 27 C 1.51402 * 136.32088 * 179.97438 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 37 37 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 38 38 H 0.96997 * 120.00422 * 179.97438 * 14 13 11 39 39 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 40 40 H 1.09000 * 109.47258 * 90.00477 * 23 22 20 41 41 H 1.09001 * 109.47384 * 210.00180 * 23 22 20 42 42 H 1.08997 * 109.47403 * 330.00101 * 23 22 20 43 43 H 1.09005 * 113.55937 * 320.63830 * 25 24 22 44 44 H 1.08992 * 113.56448 * 91.37387 * 25 24 22 45 45 H 1.09004 * 113.96732 * 220.28900 * 26 25 24 46 46 H 1.08998 * 113.60580 * 88.79376 * 26 25 24 47 47 H 1.08997 * 113.56405 * 268.62717 * 27 24 22 48 48 H 1.09002 * 113.56103 * 39.35440 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 16 7.7020 4.4772 0.1127 11 6 8.0214 6.2010 -0.0632 12 1 7.2027 6.8895 -0.2120 13 6 9.3252 6.6741 -0.0106 14 7 10.3231 5.8350 0.1702 15 14 9.6639 8.5016 -0.1978 16 1 8.9679 9.2471 0.8816 17 1 11.1258 8.7461 -0.1057 18 1 9.1674 8.9644 -1.5186 19 7 1.6525 2.0974 -1.2519 20 6 0.4351 2.6644 -1.3670 21 8 -0.3417 2.6319 -0.4320 22 6 0.0462 3.3224 -2.6238 23 6 1.0091 3.3631 -3.7824 24 6 -1.1547 3.8822 -2.7374 25 6 -2.3720 4.0513 -1.8530 26 6 -3.2086 4.1410 -3.1353 27 6 -1.9174 4.6296 -3.8107 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 5.6133 4.8818 -1.0062 37 1 5.4672 5.0880 0.7556 38 1 11.2343 6.1655 0.2066 39 1 2.2720 2.1231 -1.9978 40 1 0.8605 2.4840 -4.4094 41 1 0.8316 4.2633 -4.3709 42 1 2.0316 3.3716 -3.4050 43 1 -2.5969 3.1725 -1.2485 44 1 -2.3641 4.9738 -1.2725 45 1 -3.9973 4.8925 -3.0978 46 1 -3.5567 3.1738 -3.4979 47 1 -1.7849 5.7106 -3.7669 48 1 -1.7694 4.2252 -4.8121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285037821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = -48.717894 kcal Electronic energy + Delta-G solvation = -26963.796279 eV Core-core repulsion = 23145.641230 eV Total energy + Delta-G solvation = -3818.155049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60179 -39.31647 -38.68929 -36.54371 -33.99599 -33.72784 -32.43930 -31.98469 -30.05507 -27.88215 -26.93956 -25.87889 -25.49929 -23.89485 -23.30056 -21.52935 -20.67169 -20.28908 -18.62826 -17.81535 -16.90477 -16.78927 -16.32050 -15.95865 -15.82803 -15.55941 -15.17779 -14.81483 -14.76002 -14.03923 -14.00208 -13.77407 -13.67294 -13.34850 -13.11934 -12.94690 -12.80273 -12.76561 -12.61788 -12.35528 -12.29648 -11.96337 -11.78425 -11.73088 -11.38266 -11.31609 -11.06501 -11.05335 -11.04695 -10.82430 -10.77697 -9.87270 -9.84036 -9.48299 -9.31578 -9.11013 -9.07738 -8.95805 -8.25863 -6.51523 -6.22615 -3.93463 1.04965 2.82717 2.99706 3.04107 3.07178 3.22716 3.26786 3.30236 3.68225 3.99900 4.13719 4.19459 4.35005 4.38414 4.61654 4.72054 4.75536 4.85394 4.93118 5.11600 5.12402 5.15946 5.19799 5.25393 5.27379 5.29063 5.36529 5.44111 5.50364 5.51727 5.55565 5.63382 5.69253 5.77797 5.78223 5.85675 5.86648 5.89129 5.95404 6.11963 6.18592 6.26256 6.34663 6.53808 7.27892 7.58169 7.64280 8.02207 8.33966 8.56142 9.22585 10.84721 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002354 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.534311 B =11890.004809 C =13704.642631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.723 5.723 20 C 0.560 3.440 21 O -0.533 6.533 22 C -0.169 4.169 23 C -0.111 4.111 24 C -0.067 4.067 25 C -0.102 4.102 26 C -0.143 4.143 27 C -0.107 4.107 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.860 -6.916 -7.639 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.030 3.970 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.376 5.376 20 C 0.349 3.651 21 O -0.411 6.411 22 C -0.172 4.172 23 C -0.168 4.168 24 C -0.069 4.069 25 C -0.138 4.138 26 C -0.180 4.180 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.119 0.881 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.888 -8.516 -6.646 28.052 hybrid contribution -0.576 2.547 -0.782 2.726 sum -26.464 -5.969 -7.428 28.128 Atomic orbital electron populations 1.21778 0.94610 1.00556 1.03030 1.21883 0.97195 0.95145 1.02804 1.21327 0.93549 0.94339 0.87753 0.88566 1.21597 0.91506 0.84701 1.03381 1.45997 1.07835 1.08865 1.76756 1.20319 0.81342 0.91133 0.75377 1.90709 1.55439 1.46157 1.46728 1.23530 1.06849 0.95160 1.04880 1.85388 0.91935 1.10938 1.94992 1.22822 0.95426 0.92429 1.57765 0.90990 1.24989 0.95067 0.98951 0.94552 1.70003 0.99521 1.34642 1.46120 0.86228 0.77379 0.83071 0.78840 1.19934 1.20800 1.19943 1.46037 1.16874 1.57951 1.16782 1.18169 0.81486 0.77872 0.87596 1.90784 1.51019 1.59232 1.40113 1.20444 0.94982 1.05762 0.96026 1.20688 0.97588 1.02859 0.95646 1.23252 0.91995 0.93140 0.98520 1.22173 0.91775 1.03475 0.96418 1.22723 0.96202 1.01928 0.97147 1.22311 0.94332 1.00322 0.97396 0.93579 0.92537 0.92117 0.90624 0.91506 0.89975 0.90950 0.76705 0.89268 0.89243 0.92113 0.76156 0.91171 0.91079 0.91358 0.89645 0.88512 0.90441 0.89840 0.88146 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.51 37.16 0.32 -1.01 16 2 C -0.13 -1.08 5.61 -26.73 -0.15 -1.23 16 3 C 0.14 1.22 2.42 -67.93 -0.16 1.05 16 4 H 0.10 1.00 7.58 -51.93 -0.39 0.60 16 5 C 0.11 1.21 5.23 -4.04 -0.02 1.19 16 6 N -0.74 -9.41 5.39 -60.29 -0.32 -9.74 16 7 C 0.53 9.61 7.85 -10.98 -0.09 9.53 16 8 O -0.52 -11.39 15.86 5.56 0.09 -11.31 16 9 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 15 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 N -0.72 -6.15 4.42 -54.99 -0.24 -6.40 16 20 C 0.56 5.66 6.32 -12.66 -0.08 5.58 16 21 O -0.53 -6.72 12.28 5.27 0.06 -6.66 16 22 C -0.17 -1.46 6.00 -102.85 -0.62 -2.08 16 23 C -0.11 -0.72 9.57 36.01 0.34 -0.38 16 24 C -0.07 -0.56 6.59 -100.48 -0.66 -1.22 16 25 C -0.10 -0.81 6.99 -27.56 -0.19 -1.00 16 26 C -0.14 -0.83 8.17 -26.19 -0.21 -1.05 16 27 C -0.11 -0.63 7.71 -27.40 -0.21 -0.84 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.60 5.64 -51.93 -0.29 0.30 16 30 H 0.06 0.63 7.84 -51.93 -0.41 0.23 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.40 4.34 8.14 -40.82 -0.33 4.01 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.40 2.96 6.70 -40.82 -0.27 2.69 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.43 7.91 -51.93 -0.41 0.01 16 42 H 0.07 0.42 6.70 -51.93 -0.35 0.07 16 43 H 0.09 0.81 7.49 -51.93 -0.39 0.42 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -34.73 404.70 -10.02 -44.76 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.89 Total: 3.26 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.32 Total: -7.18 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.17 Total: -41.45 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.15 Total: -17.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.73 -10.02 -44.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285037821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.961 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds