Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47303 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00031 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00072 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99532 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00526 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99657 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47055 * 60.00291 * 15 13 11 17 17 H 1.48505 * 109.47055 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47341 * 300.00198 * 15 13 11 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.34785 * 119.99572 * 85.00499 * 19 3 2 21 21 O 1.21605 * 120.00197 * 359.97438 * 20 19 3 22 22 C 1.47098 * 119.99756 * 179.97438 * 20 19 3 23 23 C 1.50699 * 120.00118 * 359.97438 * 22 20 19 24 24 C 1.32989 * 120.00164 * 180.02562 * 22 20 19 25 25 C 1.51411 * 136.31490 * 359.62762 * 24 22 20 26 26 C 1.53375 * 87.51713 * 206.06045 * 25 24 22 27 27 C 1.51402 * 136.32088 * 179.97438 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 37 37 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 38 38 H 0.96997 * 120.00422 * 179.97438 * 14 13 11 39 39 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 40 40 H 1.09000 * 109.47258 * 90.00477 * 23 22 20 41 41 H 1.09001 * 109.47384 * 210.00180 * 23 22 20 42 42 H 1.08997 * 109.47403 * 330.00101 * 23 22 20 43 43 H 1.09005 * 113.55937 * 320.63830 * 25 24 22 44 44 H 1.08992 * 113.56448 * 91.37387 * 25 24 22 45 45 H 1.09004 * 113.96732 * 220.28900 * 26 25 24 46 46 H 1.08998 * 113.60580 * 88.79376 * 26 25 24 47 47 H 1.08997 * 113.56405 * 268.62717 * 27 24 22 48 48 H 1.09002 * 113.56103 * 39.35440 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 16 7.7020 4.4772 0.1127 11 6 8.0214 6.2010 -0.0632 12 1 7.2027 6.8895 -0.2120 13 6 9.3252 6.6741 -0.0106 14 7 10.3231 5.8350 0.1702 15 14 9.6639 8.5016 -0.1978 16 1 8.9679 9.2471 0.8816 17 1 11.1258 8.7461 -0.1057 18 1 9.1674 8.9644 -1.5186 19 7 1.6525 2.0974 -1.2519 20 6 0.4351 2.6644 -1.3670 21 8 -0.3417 2.6319 -0.4320 22 6 0.0462 3.3224 -2.6238 23 6 1.0091 3.3631 -3.7824 24 6 -1.1547 3.8822 -2.7374 25 6 -2.3720 4.0513 -1.8530 26 6 -3.2086 4.1410 -3.1353 27 6 -1.9174 4.6296 -3.8107 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 5.6133 4.8818 -1.0062 37 1 5.4672 5.0880 0.7556 38 1 11.2343 6.1655 0.2066 39 1 2.2720 2.1231 -1.9978 40 1 0.8605 2.4840 -4.4094 41 1 0.8316 4.2633 -4.3709 42 1 2.0316 3.3716 -3.4050 43 1 -2.5969 3.1725 -1.2485 44 1 -2.3641 4.9738 -1.2725 45 1 -3.9973 4.8925 -3.0978 46 1 -3.5567 3.1738 -3.4979 47 1 -1.7849 5.7106 -3.7669 48 1 -1.7694 4.2252 -4.8121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285037821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -71.399618 kcal Electronic energy + Delta-G solvation = -26964.779832 eV Core-core repulsion = 23145.641230 eV Total energy + Delta-G solvation = -3819.138602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40552 -40.53322 -39.42215 -37.47851 -35.01209 -34.58144 -34.54809 -32.66793 -31.43526 -29.01218 -27.64027 -27.47221 -26.40571 -24.71059 -24.08164 -22.24804 -21.62613 -21.37223 -19.91696 -19.19546 -17.85458 -17.69517 -17.48540 -16.95740 -16.86897 -16.64499 -16.50676 -16.20245 -15.81670 -15.50348 -14.84049 -14.65956 -14.62628 -14.47463 -14.34997 -14.04238 -13.74681 -13.47778 -13.31766 -13.29733 -13.16648 -13.00560 -12.86686 -12.85937 -12.65582 -12.50308 -12.44990 -12.17582 -11.88723 -11.78475 -11.73622 -11.39995 -11.12630 -10.99343 -10.61735 -10.27981 -10.18123 -10.09547 -9.72782 -8.65924 -8.34152 -6.12034 0.39059 1.26621 1.43993 1.46623 1.56292 1.59565 2.09313 2.25462 2.28245 2.33070 2.99870 3.31847 3.41564 3.53634 3.60086 3.83258 3.90831 4.00537 4.02279 4.10951 4.24484 4.28309 4.37607 4.42384 4.50847 4.52873 4.65693 4.72592 4.75346 4.77480 4.81226 4.84211 4.92678 4.99930 5.04101 5.05956 5.09531 5.14519 5.35215 5.36171 5.37946 5.42081 5.43400 5.52413 5.75312 6.19991 6.42087 6.56705 7.07162 7.19539 7.27431 8.74660 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002354 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.534311 B =11890.004809 C =13704.642631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.147 3.853 4 H 0.085 0.915 5 C 0.116 3.884 6 N -0.713 5.713 7 C 0.537 3.463 8 O -0.561 6.561 9 C -0.131 4.131 10 S -0.147 6.147 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.261 1.261 19 N -0.715 5.715 20 C 0.556 3.444 21 O -0.564 6.564 22 C -0.183 4.183 23 C -0.107 4.107 24 C -0.078 4.078 25 C -0.111 4.111 26 C -0.134 4.134 27 C -0.098 4.098 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.411 0.589 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.271 0.729 39 H 0.410 0.590 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.448 -5.681 -9.023 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.042 3.958 4 H 0.103 0.897 5 C -0.008 4.008 6 N -0.367 5.367 7 C 0.323 3.677 8 O -0.439 6.439 9 C -0.282 4.282 10 S 0.080 5.920 11 C -0.695 4.695 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.186 1.186 19 N -0.369 5.369 20 C 0.346 3.654 21 O -0.444 6.444 22 C -0.186 4.186 23 C -0.164 4.164 24 C -0.080 4.080 25 C -0.147 4.147 26 C -0.171 4.171 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.248 0.752 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.130 0.870 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.524 -7.281 -8.050 29.587 hybrid contribution -0.242 2.083 -0.320 2.121 sum -27.766 -5.198 -8.370 29.463 Atomic orbital electron populations 1.21687 0.95305 1.00745 1.01568 1.21866 0.96350 0.94532 1.03881 1.21163 0.92035 0.94962 0.87683 0.89704 1.21709 0.92380 0.83159 1.03560 1.45726 1.06075 1.10433 1.74510 1.19988 0.82609 0.89786 0.75333 1.90702 1.56937 1.46972 1.49261 1.23377 1.01143 0.97086 1.06642 1.85541 0.99196 1.11839 1.95391 1.23166 0.96129 0.92594 1.57628 0.90006 1.26109 0.94743 1.04389 0.93861 1.70168 1.00024 1.37176 1.47319 0.85027 0.77353 0.76306 0.79458 1.18823 1.20404 1.18567 1.45964 1.16674 1.57452 1.16767 1.18491 0.81412 0.77624 0.87862 1.90774 1.51895 1.60475 1.41279 1.20582 0.95790 1.06142 0.96039 1.20704 0.97070 1.03657 0.94978 1.23625 0.91866 0.92938 0.99587 1.22230 0.92912 1.02465 0.97140 1.22707 0.96508 1.02511 0.95395 1.22336 0.93261 1.00672 0.97205 0.92504 0.93910 0.93654 0.89544 0.90452 0.90157 0.90387 0.75217 0.87092 0.87674 0.91985 0.75243 0.90283 0.90329 0.91077 0.91864 0.88584 0.88971 0.89705 0.87024 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.51 71.98 0.61 -1.82 16 2 C -0.13 -1.91 5.61 30.60 0.17 -1.73 16 3 C 0.15 2.45 2.42 44.99 0.11 2.56 16 4 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 5 C 0.12 2.30 5.23 86.38 0.45 2.75 16 6 N -0.71 -16.94 5.39 -463.06 -2.49 -19.43 16 7 C 0.54 18.90 7.85 87.66 0.69 19.59 16 8 O -0.56 -24.84 15.86 -3.03 -0.05 -24.89 16 9 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 10 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 11 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 15 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 19 N -0.72 -11.20 4.42 -446.13 -1.97 -13.17 16 20 C 0.56 10.86 6.32 86.57 0.55 11.41 16 21 O -0.56 -14.32 12.28 -4.05 -0.05 -14.37 16 22 C -0.18 -2.95 6.00 -18.71 -0.11 -3.06 16 23 C -0.11 -1.18 9.57 71.24 0.68 -0.50 16 24 C -0.08 -1.21 6.59 -17.17 -0.11 -1.33 16 25 C -0.11 -1.74 6.99 30.06 0.21 -1.53 16 26 C -0.13 -1.35 8.17 30.95 0.25 -1.10 16 27 C -0.10 -0.95 7.71 30.16 0.23 -0.72 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.89 5.64 -2.39 -0.01 0.87 16 30 H 0.04 0.95 7.84 -2.38 -0.02 0.93 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.41 8.01 8.14 -92.71 -0.75 7.25 16 36 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 37 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.41 5.24 6.70 -92.71 -0.62 4.62 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.75 7.91 -2.39 -0.02 0.73 16 42 H 0.07 0.72 6.70 -2.39 -0.02 0.70 16 43 H 0.06 1.26 7.49 -2.38 -0.02 1.24 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -77.22 404.70 1.47 -75.75 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.40 Total: 24.49 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 5.28 Total: -9.17 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -4.18 Total: -87.87 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.10 Total: -39.26 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -77.22 1.47 -75.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285037821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.351 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds