Wall clock time and date at job start Sat Apr 11 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47544 * 2 1 4 4 H 1.09003 * 115.56171 * 29.31490 * 3 2 1 5 5 C 1.52991 * 117.50161 * 243.62340 * 3 2 1 6 6 C 1.52992 * 60.00129 * 252.51060 * 5 3 2 7 7 H 1.09001 * 117.50187 * 107.51498 * 6 5 3 8 8 C 1.50702 * 117.49669 * 252.51183 * 6 5 3 9 9 O 1.21279 * 120.00544 * 74.58109 * 8 6 5 10 10 N 1.34780 * 119.99951 * 254.57830 * 8 6 5 11 11 C 1.46501 * 119.99997 * 4.27444 * 10 8 6 12 12 C 1.46500 * 120.00028 * 184.27133 * 10 8 6 13 13 C 1.53003 * 109.47239 * 267.96507 * 12 10 8 14 14 H 1.08996 * 112.95999 * 65.71811 * 13 12 10 15 15 C 1.53939 * 113.77058 * 294.03745 * 13 12 10 16 16 C 1.53943 * 86.29282 * 221.97940 * 15 13 12 17 17 N 1.47577 * 113.86875 * 197.49068 * 13 12 10 18 18 C 1.34779 * 134.49757 * 318.95874 * 17 13 12 19 19 O 1.21285 * 119.99680 * 5.05778 * 18 17 13 20 20 C 1.50693 * 120.00073 * 185.06098 * 18 17 13 21 21 S 1.81003 * 109.47132 * 185.14035 * 20 18 17 22 22 C 1.76205 * 100.00248 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99356 * 359.97438 * 22 21 20 24 24 C 1.38796 * 119.99990 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00038 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99705 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47239 * 90.00549 * 26 24 22 28 28 H 1.48499 * 109.47100 * 210.00286 * 26 24 22 29 29 H 1.48496 * 109.47462 * 330.00335 * 26 24 22 30 30 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46438 * 300.00373 * 1 2 3 32 32 H 1.08997 * 109.46568 * 59.99416 * 1 2 3 33 33 H 1.09001 * 109.46995 * 240.00147 * 2 1 3 34 34 H 1.09005 * 109.47171 * 120.00691 * 2 1 3 35 35 H 1.09001 * 117.50438 * 145.01813 * 5 3 2 36 36 H 1.09003 * 117.52032 * 359.97438 * 5 3 2 37 37 H 1.08996 * 109.47123 * 270.00041 * 11 10 8 38 38 H 1.09007 * 109.47212 * 30.00143 * 11 10 8 39 39 H 1.09001 * 109.47545 * 149.99790 * 11 10 8 40 40 H 1.09000 * 109.46759 * 147.96779 * 12 10 8 41 41 H 1.09001 * 109.47131 * 27.97262 * 12 10 8 42 42 H 1.09001 * 113.74366 * 336.32866 * 15 13 12 43 43 H 1.09004 * 113.74012 * 107.52726 * 15 13 12 44 44 H 1.08995 * 113.77346 * 137.90766 * 16 15 13 45 45 H 1.08997 * 113.76934 * 269.31246 * 16 15 13 46 46 H 1.09006 * 109.47374 * 305.13582 * 20 18 17 47 47 H 1.08992 * 109.47589 * 65.13431 * 20 18 17 48 48 H 0.97002 * 119.99672 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.3886 2.1717 0.4815 5 6 2.8441 1.9075 -1.2158 6 6 3.5503 1.6577 0.1183 7 1 4.1807 0.7720 0.1959 8 6 4.0230 2.8618 0.8914 9 8 3.2227 3.5558 1.4820 10 7 5.3352 3.1675 0.9266 11 6 6.2908 2.3856 0.1381 12 6 5.8059 4.2816 1.7533 13 6 5.8378 5.5610 0.9147 14 1 4.8469 5.8879 0.6000 15 6 6.8722 5.5302 -0.2249 16 6 7.2008 6.9818 0.1685 17 7 6.6618 6.6372 1.4985 18 6 6.8475 7.1140 2.7454 19 8 6.3232 6.5624 3.6898 20 6 7.7065 8.3323 2.9661 21 16 7.8844 8.6314 4.7423 22 6 8.9039 10.0682 4.7101 23 1 9.2188 10.4857 3.7651 24 6 9.3024 10.6632 5.8991 25 7 8.9190 10.1539 7.0508 26 14 10.3838 12.1859 5.8649 27 1 9.5288 13.3997 5.8330 28 1 11.2378 12.2139 7.0794 29 1 11.2445 12.1548 4.6552 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8900 35 1 2.7215 2.9427 -1.5343 36 1 3.0102 1.1859 -2.0157 37 1 6.6561 1.5497 0.7347 38 1 5.7983 2.0054 -0.7569 39 1 7.1291 3.0200 -0.1502 40 1 6.8085 4.0630 2.1209 41 1 5.1308 4.4177 2.5982 42 1 7.6925 4.8329 -0.0545 43 1 6.4300 5.4318 -1.2164 44 1 8.2675 7.2055 0.1713 45 1 6.6101 7.7261 -0.3654 46 1 8.6898 8.1684 2.5250 47 1 7.2376 9.1973 2.4971 48 1 9.1971 10.5700 7.8817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001290010018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:54 Heat of formation + Delta-G solvation = -13.845906 kcal Electronic energy + Delta-G solvation = -26829.016954 eV Core-core repulsion = 23012.374068 eV Total energy + Delta-G solvation = -3816.642886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75274 -39.89109 -37.68974 -37.18567 -35.60771 -32.47292 -32.42162 -30.80678 -29.42008 -28.04373 -26.94412 -25.48164 -25.04369 -24.12734 -22.81300 -21.94441 -20.85046 -19.32505 -18.80746 -17.71824 -17.37196 -16.70702 -16.50809 -16.14274 -15.37697 -15.25347 -14.91743 -14.79980 -14.74995 -14.31183 -14.15508 -13.81961 -13.40854 -13.32807 -13.11160 -12.87028 -12.81722 -12.62729 -12.51787 -12.49538 -12.22791 -12.01282 -11.80143 -11.71105 -11.58745 -11.41145 -11.05813 -11.02215 -10.86305 -10.75243 -10.66393 -10.38286 -9.97339 -9.81017 -9.29273 -9.05920 -9.01189 -8.49346 -8.22088 -6.49126 -6.20698 -3.91373 2.26520 2.45703 2.95716 3.09138 3.22828 3.26135 3.30578 3.43526 3.59262 4.08074 4.20245 4.21303 4.36013 4.38495 4.63071 4.66344 4.72242 4.79677 4.83146 4.95121 4.95619 5.00427 5.06507 5.11246 5.14380 5.24506 5.28195 5.31314 5.37723 5.39000 5.47821 5.49177 5.53152 5.58611 5.60309 5.71277 5.77148 5.87067 5.90529 5.98646 6.00472 6.03700 6.16008 6.35025 7.12758 7.60175 7.86161 7.97985 8.35982 8.58398 9.24344 10.86730 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.001915 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.901088 B =14618.578500 C =15202.096895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.119 4.119 4 H 0.118 0.882 5 C -0.150 4.150 6 C -0.189 4.189 7 H 0.124 0.876 8 C 0.541 3.459 9 O -0.531 6.531 10 N -0.609 5.609 11 C 0.076 3.924 12 C 0.117 3.883 13 C 0.125 3.875 14 H 0.091 0.909 15 C -0.149 4.149 16 C 0.104 3.896 17 N -0.646 5.646 18 C 0.554 3.446 19 O -0.511 6.511 20 C -0.145 4.145 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 -20.298 -23.272 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.187 4.187 6 C -0.210 4.210 7 H 0.142 0.858 8 C 0.328 3.672 9 O -0.407 6.407 10 N -0.343 5.343 11 C -0.067 4.067 12 C -0.006 4.006 13 C 0.020 3.980 14 H 0.109 0.891 15 C -0.187 4.187 16 C -0.019 4.019 17 N -0.386 5.386 18 C 0.343 3.657 19 O -0.385 6.385 20 C -0.295 4.295 21 S 0.166 5.834 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.297 -20.692 -21.098 30.980 hybrid contribution 1.448 1.820 -1.131 2.586 sum -7.850 -18.873 -22.229 30.198 Atomic orbital electron populations 1.21744 0.95109 1.01668 1.02251 1.21149 0.96372 0.93539 1.02099 1.22503 0.91524 0.98858 1.00828 0.86391 1.23106 1.02224 1.03131 0.90281 1.22299 0.97737 0.98897 1.02033 0.85809 1.19762 0.81789 0.85004 0.80601 1.90741 1.53436 1.51756 1.44728 1.47681 1.06880 1.32562 1.47164 1.21906 0.93288 0.96058 0.95483 1.21552 1.01665 0.83900 0.93499 1.23055 0.95918 0.87875 0.91163 0.89076 1.23649 0.99276 0.97204 0.98549 1.23082 1.00421 0.96638 0.81771 1.50190 1.46553 1.36167 1.05714 1.20088 0.80837 0.84269 0.80493 1.90720 1.49183 1.58780 1.39812 1.23475 1.01020 0.97094 1.07929 1.85410 1.66738 1.36868 0.94354 1.22861 1.36175 1.13892 0.95428 0.90960 1.24993 0.96210 0.97833 0.94544 1.70023 1.43271 1.39541 0.97408 0.86162 0.79787 0.81715 0.77795 1.20262 1.20735 1.19714 0.92606 0.92381 0.92527 0.91701 0.91383 0.88332 0.87799 0.92513 0.90749 0.90562 0.89756 0.88420 0.88931 0.89974 0.89761 0.89884 0.89584 0.89269 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.87 37.16 0.37 -0.49 16 2 C -0.09 -0.56 6.22 -26.73 -0.17 -0.72 16 3 C -0.12 -0.92 5.25 -90.63 -0.48 -1.40 16 4 H 0.12 1.18 7.61 -51.93 -0.40 0.78 16 5 C -0.15 -0.93 9.88 -26.74 -0.26 -1.19 16 6 C -0.19 -1.47 4.29 -91.78 -0.39 -1.87 16 7 H 0.12 0.73 7.73 -51.93 -0.40 0.33 16 8 C 0.54 6.31 7.44 -10.98 -0.08 6.23 16 9 O -0.53 -8.63 15.86 5.56 0.09 -8.55 16 10 N -0.61 -6.14 2.82 -181.57 -0.51 -6.65 16 11 C 0.08 0.44 9.75 59.85 0.58 1.02 16 12 C 0.12 1.53 4.79 -4.04 -0.02 1.51 16 13 C 0.12 1.54 4.53 -66.87 -0.30 1.23 16 14 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.15 -1.20 6.80 -25.81 -0.18 -1.38 16 16 C 0.10 1.04 8.61 -2.97 -0.03 1.01 16 17 N -0.65 -9.60 3.49 -171.22 -0.60 -10.20 16 18 C 0.55 11.10 7.99 -10.99 -0.09 11.01 16 19 O -0.51 -12.26 15.88 5.55 0.09 -12.17 16 20 C -0.14 -3.07 5.91 36.00 0.21 -2.85 16 21 S -0.06 -1.68 20.58 -107.50 -2.21 -3.89 16 22 C -0.54 -15.50 9.50 30.94 0.29 -15.20 16 23 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 24 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 25 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 26 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.30 7.88 -51.93 -0.41 -0.11 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.43 8.03 -51.93 -0.42 0.01 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.30 6.92 -51.92 -0.36 -0.06 16 39 H 0.08 0.37 5.78 -51.93 -0.30 0.07 16 40 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 41 H 0.10 1.68 7.33 -51.93 -0.38 1.30 16 42 H 0.09 0.66 6.67 -51.93 -0.35 0.31 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 408.92 15.07 6.16 6.16 Total: -1.00 -37.41 408.92 -9.95 -47.37 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.05 Total: -1.85 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.63 Total: -1.06 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.38 Total: -42.61 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.18 Total: -20.72 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.41 -9.95 -47.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290010018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.521 kcal (2) G-P(sol) polarization free energy of solvation -37.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds