Wall clock time and date at job start Sat Apr 11 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47544 * 2 1 4 4 H 1.09003 * 115.56171 * 29.31490 * 3 2 1 5 5 C 1.52991 * 117.50161 * 243.62340 * 3 2 1 6 6 C 1.52992 * 60.00129 * 252.51060 * 5 3 2 7 7 H 1.09001 * 117.50187 * 107.51498 * 6 5 3 8 8 C 1.50702 * 117.49669 * 252.51183 * 6 5 3 9 9 O 1.21279 * 120.00544 * 74.58109 * 8 6 5 10 10 N 1.34780 * 119.99951 * 254.57830 * 8 6 5 11 11 C 1.46501 * 119.99997 * 4.27444 * 10 8 6 12 12 C 1.46500 * 120.00028 * 184.27133 * 10 8 6 13 13 C 1.53003 * 109.47239 * 267.96507 * 12 10 8 14 14 H 1.08996 * 112.95999 * 65.71811 * 13 12 10 15 15 C 1.53939 * 113.77058 * 294.03745 * 13 12 10 16 16 C 1.53943 * 86.29282 * 221.97940 * 15 13 12 17 17 N 1.47577 * 113.86875 * 197.49068 * 13 12 10 18 18 C 1.34779 * 134.49757 * 318.95874 * 17 13 12 19 19 O 1.21285 * 119.99680 * 5.05778 * 18 17 13 20 20 C 1.50693 * 120.00073 * 185.06098 * 18 17 13 21 21 S 1.81003 * 109.47132 * 185.14035 * 20 18 17 22 22 C 1.76205 * 100.00248 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99356 * 359.97438 * 22 21 20 24 24 C 1.38796 * 119.99990 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00038 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99705 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47239 * 90.00549 * 26 24 22 28 28 H 1.48499 * 109.47100 * 210.00286 * 26 24 22 29 29 H 1.48496 * 109.47462 * 330.00335 * 26 24 22 30 30 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46438 * 300.00373 * 1 2 3 32 32 H 1.08997 * 109.46568 * 59.99416 * 1 2 3 33 33 H 1.09001 * 109.46995 * 240.00147 * 2 1 3 34 34 H 1.09005 * 109.47171 * 120.00691 * 2 1 3 35 35 H 1.09001 * 117.50438 * 145.01813 * 5 3 2 36 36 H 1.09003 * 117.52032 * 359.97438 * 5 3 2 37 37 H 1.08996 * 109.47123 * 270.00041 * 11 10 8 38 38 H 1.09007 * 109.47212 * 30.00143 * 11 10 8 39 39 H 1.09001 * 109.47545 * 149.99790 * 11 10 8 40 40 H 1.09000 * 109.46759 * 147.96779 * 12 10 8 41 41 H 1.09001 * 109.47131 * 27.97262 * 12 10 8 42 42 H 1.09001 * 113.74366 * 336.32866 * 15 13 12 43 43 H 1.09004 * 113.74012 * 107.52726 * 15 13 12 44 44 H 1.08995 * 113.77346 * 137.90766 * 16 15 13 45 45 H 1.08997 * 113.76934 * 269.31246 * 16 15 13 46 46 H 1.09006 * 109.47374 * 305.13582 * 20 18 17 47 47 H 1.08992 * 109.47589 * 65.13431 * 20 18 17 48 48 H 0.97002 * 119.99672 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.3886 2.1717 0.4815 5 6 2.8441 1.9075 -1.2158 6 6 3.5503 1.6577 0.1183 7 1 4.1807 0.7720 0.1959 8 6 4.0230 2.8618 0.8914 9 8 3.2227 3.5558 1.4820 10 7 5.3352 3.1675 0.9266 11 6 6.2908 2.3856 0.1381 12 6 5.8059 4.2816 1.7533 13 6 5.8378 5.5610 0.9147 14 1 4.8469 5.8879 0.6000 15 6 6.8722 5.5302 -0.2249 16 6 7.2008 6.9818 0.1685 17 7 6.6618 6.6372 1.4985 18 6 6.8475 7.1140 2.7454 19 8 6.3232 6.5624 3.6898 20 6 7.7065 8.3323 2.9661 21 16 7.8844 8.6314 4.7423 22 6 8.9039 10.0682 4.7101 23 1 9.2188 10.4857 3.7651 24 6 9.3024 10.6632 5.8991 25 7 8.9190 10.1539 7.0508 26 14 10.3838 12.1859 5.8649 27 1 9.5288 13.3997 5.8330 28 1 11.2378 12.2139 7.0794 29 1 11.2445 12.1548 4.6552 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8900 35 1 2.7215 2.9427 -1.5343 36 1 3.0102 1.1859 -2.0157 37 1 6.6561 1.5497 0.7347 38 1 5.7983 2.0054 -0.7569 39 1 7.1291 3.0200 -0.1502 40 1 6.8085 4.0630 2.1209 41 1 5.1308 4.4177 2.5982 42 1 7.6925 4.8329 -0.0545 43 1 6.4300 5.4318 -1.2164 44 1 8.2675 7.2055 0.1713 45 1 6.6101 7.7261 -0.3654 46 1 8.6898 8.1684 2.5250 47 1 7.2376 9.1973 2.4971 48 1 9.1971 10.5700 7.8817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290010018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:53 Heat of formation + Delta-G solvation = -38.669501 kcal Electronic energy + Delta-G solvation = -26830.093385 eV Core-core repulsion = 23012.374068 eV Total energy + Delta-G solvation = -3817.719318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74418 -40.91354 -38.92173 -38.05219 -36.54534 -34.61619 -32.99837 -32.21894 -30.35367 -29.42449 -27.67685 -27.60223 -25.83508 -24.64763 -23.58867 -23.04386 -21.41025 -20.36141 -20.01668 -19.45619 -18.24566 -18.02158 -17.54292 -17.15253 -16.91105 -16.67014 -16.21986 -15.94155 -15.68236 -15.47540 -15.17779 -14.91576 -14.67653 -14.23891 -14.09631 -13.98256 -13.76405 -13.53681 -13.43474 -13.34446 -13.20764 -13.06217 -12.97477 -12.91165 -12.74821 -12.60485 -12.37644 -12.18879 -11.92365 -11.83531 -11.75864 -11.27183 -11.16923 -10.99216 -10.87007 -10.74316 -10.32562 -9.98962 -9.60372 -8.71961 -8.37150 -6.16839 1.15901 1.38826 1.41176 1.42134 1.51604 1.53869 1.72983 2.16915 2.25209 2.82893 2.96877 3.17698 3.34500 3.45927 3.63689 3.74684 3.80713 3.86929 3.90986 4.03955 4.17520 4.20936 4.29051 4.34743 4.39989 4.41717 4.48860 4.50851 4.56249 4.60719 4.67263 4.77915 4.79956 4.86775 4.92852 4.95122 4.97846 5.01445 5.15815 5.22942 5.23955 5.29943 5.38357 5.44994 5.50211 6.16893 6.32806 6.57534 7.03417 7.07030 7.12098 8.72296 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.001915 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.901088 B =14618.578500 C =15202.096895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.135 4.135 4 H 0.083 0.917 5 C -0.124 4.124 6 C -0.188 4.188 7 H 0.153 0.847 8 C 0.530 3.470 9 O -0.593 6.593 10 N -0.602 5.602 11 C 0.067 3.933 12 C 0.125 3.875 13 C 0.116 3.884 14 H 0.079 0.921 15 C -0.118 4.118 16 C 0.098 3.902 17 N -0.646 5.646 18 C 0.548 3.452 19 O -0.568 6.568 20 C -0.116 4.116 21 S -0.154 6.154 22 C -0.547 4.547 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.912 5.912 26 Si 1.002 2.998 27 H -0.269 1.269 28 H -0.276 1.276 29 H -0.256 1.256 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 -21.119 -27.941 35.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.154 4.154 4 H 0.101 0.899 5 C -0.161 4.161 6 C -0.209 4.209 7 H 0.170 0.830 8 C 0.320 3.680 9 O -0.473 6.473 10 N -0.334 5.334 11 C -0.074 4.074 12 C 0.000 4.000 13 C 0.012 3.988 14 H 0.097 0.903 15 C -0.156 4.156 16 C -0.023 4.023 17 N -0.384 5.384 18 C 0.337 3.663 19 O -0.446 6.446 20 C -0.268 4.268 21 S 0.073 5.927 22 C -0.694 4.694 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.823 3.177 27 H -0.194 1.194 28 H -0.201 1.201 29 H -0.179 1.179 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.157 0.843 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.120 0.880 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.228 -21.548 -25.870 34.436 hybrid contribution 0.734 1.998 0.224 2.140 sum -6.494 -19.550 -25.646 32.895 Atomic orbital electron populations 1.21757 0.95361 1.02198 1.01604 1.21135 0.96148 0.92179 1.03039 1.22494 0.91169 0.99437 1.02333 0.89880 1.23218 0.99418 1.03519 0.89958 1.22315 0.97939 0.97820 1.02795 0.82961 1.20577 0.81733 0.85563 0.80113 1.90717 1.55150 1.54039 1.47436 1.47767 1.07304 1.31791 1.46576 1.22262 0.93022 0.96094 0.95978 1.21218 0.99975 0.85925 0.92846 1.23268 0.96615 0.86400 0.92489 0.90287 1.23596 0.97743 0.96047 0.98171 1.23551 1.01695 0.98592 0.78448 1.50344 1.46200 1.36162 1.05659 1.19905 0.80566 0.83874 0.81917 1.90698 1.51407 1.60286 1.42237 1.23260 1.02764 0.98409 1.02319 1.85638 1.67426 1.37865 1.01798 1.23192 1.36165 1.13841 0.96230 0.89858 1.26179 0.97628 1.01547 0.93859 1.70198 1.44803 1.41509 0.98324 0.84908 0.77638 0.76667 0.78471 1.19374 1.20146 1.17944 0.91412 0.94057 0.92244 0.89280 0.91767 0.89239 0.84261 0.91575 0.87912 0.88936 0.89821 0.93992 0.87118 0.86219 0.88072 0.87920 0.87333 0.88010 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.87 71.98 0.71 -0.93 16 2 C -0.09 -0.90 6.22 30.60 0.19 -0.71 16 3 C -0.14 -2.04 5.25 -10.80 -0.06 -2.09 16 4 H 0.08 1.84 7.61 -2.39 -0.02 1.83 16 5 C -0.12 -1.20 9.88 30.59 0.30 -0.90 16 6 C -0.19 -2.63 4.29 -11.54 -0.05 -2.68 16 7 H 0.15 1.25 7.73 -2.39 -0.02 1.23 16 8 C 0.53 12.62 7.44 87.66 0.65 13.27 16 9 O -0.59 -21.11 15.86 -3.03 -0.05 -21.16 16 10 N -0.60 -11.75 2.82 -846.74 -2.39 -14.14 16 11 C 0.07 0.55 9.75 127.77 1.25 1.79 16 12 C 0.12 3.41 4.79 86.38 0.41 3.83 16 13 C 0.12 2.80 4.53 45.09 0.20 3.01 16 14 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.12 -1.42 6.80 31.25 0.21 -1.21 16 16 C 0.10 1.60 8.61 86.48 0.74 2.35 16 17 N -0.65 -18.77 3.49 -813.99 -2.84 -21.61 16 18 C 0.55 22.62 7.99 87.65 0.70 23.32 16 19 O -0.57 -29.20 15.88 -3.04 -0.05 -29.24 16 20 C -0.12 -4.97 5.91 71.23 0.42 -4.55 16 21 S -0.15 -8.97 20.58 -56.49 -1.16 -10.14 16 22 C -0.55 -32.02 9.50 67.95 0.65 -31.38 16 23 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 24 C 0.01 0.73 5.49 84.86 0.47 1.19 16 25 N -0.91 -57.27 13.22 21.65 0.29 -56.98 16 26 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.50 7.88 -2.39 -0.02 0.48 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.14 0.42 8.03 -2.39 -0.02 0.40 16 37 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.10 0.31 6.92 -2.38 -0.02 0.29 16 39 H 0.09 0.47 5.78 -2.39 -0.01 0.46 16 40 H 0.08 2.24 8.09 -2.39 -0.02 2.23 16 41 H 0.04 1.61 7.33 -2.39 -0.02 1.60 16 42 H 0.11 1.01 6.67 -2.39 -0.02 1.00 16 43 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 47 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 48 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -91.40 408.92 3.56 -87.84 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.94 Total: 14.85 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 6.80 Total: 4.33 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.95 Total: -92.73 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.10 Total: -50.40 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.14 kcal Total: -91.40 3.56 -87.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290010018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.169 kcal (2) G-P(sol) polarization free energy of solvation -91.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds