Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.34773 * 120.00149 * 89.99434 * 4 3 2 6 6 O 1.21280 * 120.00194 * 180.02562 * 5 4 3 7 7 C 1.50705 * 119.99746 * 0.02562 * 5 4 3 8 8 S 1.80999 * 109.46997 * 179.97438 * 7 5 4 9 9 C 1.76195 * 99.99987 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00198 * 0.02562 * 9 8 7 11 11 C 1.38806 * 120.00300 * 179.97438 * 9 8 7 12 12 N 1.31637 * 119.99348 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00430 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46864 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47472 * 119.99918 * 13 11 9 16 16 H 1.48498 * 109.47183 * 240.00518 * 13 11 9 17 17 C 1.46504 * 119.99881 * 270.00232 * 4 3 2 18 18 H 1.08994 * 110.64010 * 359.29580 * 17 4 3 19 19 C 1.55159 * 110.71498 * 236.15572 * 17 4 3 20 20 C 1.54914 * 101.57831 * 206.13677 * 19 17 4 21 21 N 1.47426 * 104.83674 * 37.00711 * 20 19 17 22 22 C 1.34768 * 125.64763 * 155.90694 * 21 20 19 23 23 O 1.21288 * 119.99511 * 179.97438 * 22 21 20 24 24 C 1.50698 * 120.00357 * 359.97438 * 22 21 20 25 25 C 1.53001 * 117.49788 * 248.61767 * 24 22 21 26 26 C 1.52996 * 60.00102 * 252.51071 * 25 24 22 27 27 C 1.47323 * 108.73357 * 335.72121 * 21 20 19 28 28 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 32 32 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 33 33 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 34 34 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 35 35 H 1.09002 * 109.47098 * 299.98994 * 7 5 4 36 36 H 1.08999 * 109.47069 * 59.99832 * 7 5 4 37 37 H 0.97006 * 119.99405 * 179.97438 * 12 11 9 38 38 H 1.09002 * 111.00454 * 324.20405 * 19 17 4 39 39 H 1.08996 * 111.00741 * 88.02483 * 19 17 4 40 40 H 1.08994 * 110.36691 * 155.85339 * 20 19 17 41 41 H 1.09006 * 110.36339 * 278.17306 * 20 19 17 42 42 H 1.08998 * 115.55137 * 34.32505 * 24 22 21 43 43 H 1.08994 * 117.49918 * 0.02562 * 25 24 22 44 44 H 1.09003 * 117.49768 * 145.01578 * 25 24 22 45 45 H 1.09001 * 117.49748 * 252.51586 * 26 25 24 46 46 H 1.08996 * 117.49959 * 107.49374 * 26 25 24 47 47 H 1.09003 * 110.05930 * 241.87056 * 27 21 20 48 48 H 1.08995 * 109.85367 * 120.60846 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1793 1.4425 -1.1663 6 8 5.3921 1.4421 -1.1658 7 6 3.4263 1.4427 -2.4717 8 16 4.6030 1.4430 -3.8469 9 6 3.4836 1.4424 -5.2075 10 1 2.4182 1.4424 -5.0303 11 6 3.9708 1.4431 -6.5073 12 7 5.2693 1.4446 -6.7232 13 14 2.7840 1.4432 -7.9497 14 1 1.3884 1.4419 -7.4424 15 1 3.0096 2.6560 -8.7764 16 1 3.0104 0.2310 -8.7771 17 6 4.2368 1.4429 1.2697 18 1 3.5453 1.4555 2.1121 19 6 5.2111 2.6483 1.3412 20 6 6.2916 2.1175 2.3162 21 7 6.4300 0.6878 1.9841 22 6 7.5182 -0.0715 2.2198 23 8 7.5207 -1.2424 1.9034 24 6 8.7318 0.5341 2.8766 25 6 9.9929 0.6892 2.0241 26 6 9.9350 -0.3799 3.1171 27 6 5.1805 0.2248 1.3559 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6764 1.9564 0.8900 35 1 2.7995 0.5528 -2.5297 36 1 2.7999 2.3328 -2.5297 37 1 5.6099 1.4446 -7.6316 38 1 5.6398 2.8628 0.3622 39 1 4.7144 3.5285 1.7492 40 1 7.2359 2.6374 2.1555 41 1 5.9626 2.2370 3.3485 42 1 8.5287 1.3048 3.6201 43 1 9.9446 0.3536 0.9883 44 1 10.6195 1.5623 2.2066 45 1 10.5236 -0.2102 4.0187 46 1 9.8488 -1.4192 2.8004 47 1 4.7233 -0.5559 1.9639 48 1 5.3877 -0.1552 0.3556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296761534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -64.749474 kcal Electronic energy + Delta-G solvation = -27951.690061 eV Core-core repulsion = 24132.839831 eV Total energy + Delta-G solvation = -3818.850230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78395 -40.72546 -38.43984 -37.17164 -36.92298 -34.60741 -33.94092 -32.27526 -30.72424 -29.57578 -27.69918 -27.01604 -25.87501 -23.66751 -23.33633 -23.08750 -22.40371 -20.43940 -20.08524 -19.36167 -18.60702 -18.01820 -17.63392 -16.91895 -16.88181 -16.62045 -16.32579 -15.93740 -15.77522 -15.57080 -15.01726 -14.82307 -14.51872 -14.46419 -14.35664 -14.23077 -13.70655 -13.45529 -13.37114 -13.21721 -13.05736 -13.01218 -12.94971 -12.62468 -12.60106 -12.49043 -12.44688 -12.12166 -12.03019 -11.72683 -11.59258 -11.57480 -11.46767 -11.17654 -11.00248 -10.63351 -10.27776 -9.72730 -9.70733 -8.68996 -8.36917 -6.14916 1.22688 1.39111 1.39818 1.42181 1.53039 1.56956 1.79676 2.18341 2.25749 2.89376 2.97327 3.22614 3.34690 3.51437 3.68290 3.74326 3.81842 3.93095 3.94922 4.08175 4.09257 4.14956 4.20401 4.26103 4.31173 4.44461 4.45172 4.54409 4.60940 4.69602 4.72062 4.75024 4.76812 4.84174 4.93764 4.96953 4.99706 5.15979 5.17960 5.22474 5.26477 5.27979 5.39367 5.45511 5.68919 6.17501 6.26796 6.44955 7.04392 7.06809 7.15764 8.72527 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003161 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.677336 B = 8856.693887 C =10680.392468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.105 3.895 4 N -0.599 5.599 5 C 0.532 3.468 6 O -0.546 6.546 7 C -0.123 4.123 8 S -0.154 6.154 9 C -0.543 4.543 10 H 0.081 0.919 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 0.999 3.001 14 H -0.256 1.256 15 H -0.272 1.272 16 H -0.276 1.276 17 C 0.147 3.853 18 H 0.153 0.847 19 C -0.147 4.147 20 C 0.105 3.895 21 N -0.609 5.609 22 C 0.541 3.459 23 O -0.599 6.599 24 C -0.190 4.190 25 C -0.152 4.152 26 C -0.144 4.144 27 C 0.098 3.902 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.271 0.729 38 H 0.058 0.942 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.161 0.839 43 H 0.068 0.932 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 4.812 25.828 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 C -0.016 4.016 4 N -0.332 5.332 5 C 0.319 3.681 6 O -0.423 6.423 7 C -0.274 4.274 8 S 0.074 5.926 9 C -0.691 4.691 10 H 0.100 0.900 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.179 1.179 15 H -0.197 1.197 16 H -0.201 1.201 17 C 0.043 3.957 18 H 0.170 0.830 19 C -0.186 4.186 20 C -0.017 4.017 21 N -0.342 5.342 22 C 0.332 3.668 23 O -0.481 6.481 24 C -0.210 4.210 25 C -0.189 4.189 26 C -0.181 4.181 27 C -0.027 4.027 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.178 0.822 43 H 0.087 0.913 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.351 4.181 25.570 26.125 hybrid contribution -1.641 -0.598 -1.739 2.464 sum -4.992 3.584 23.831 24.611 Atomic orbital electron populations 1.21660 0.93399 1.02304 1.02857 1.21965 0.97580 0.96916 1.01803 1.22023 0.76594 0.97492 1.05514 1.47913 1.07883 1.73430 1.03939 1.20050 0.87325 0.75360 0.85321 1.90698 1.15300 1.48964 1.87387 1.23408 1.02677 1.05914 0.95438 1.85590 1.12664 1.96989 0.97386 1.23199 0.94531 1.58710 0.92628 0.90049 1.26140 0.97588 0.93761 1.01720 1.70203 1.14109 1.48113 1.22394 0.84909 0.78221 0.78095 0.76754 1.17914 1.19724 1.20107 1.22248 0.93701 0.93223 0.86537 0.82977 1.23244 0.96397 0.98443 1.00514 1.22582 1.00512 0.78490 1.00068 1.48414 1.13766 1.12578 1.59399 1.20190 0.83581 0.85106 0.77929 1.90665 1.83001 1.19115 1.55335 1.22241 0.87252 1.06073 1.05455 1.23010 0.97101 1.02817 0.96000 1.23030 0.97635 0.95917 1.01562 1.22243 0.85206 0.98094 0.97128 0.90406 0.92687 0.92638 0.94417 0.91145 0.90020 0.86002 0.88441 0.87450 0.92041 0.92322 0.86004 0.89472 0.86972 0.82192 0.91287 0.84417 0.84337 0.90235 0.91152 0.94977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.14 -2.55 6.26 30.60 0.19 -2.35 16 3 C 0.11 1.76 5.20 86.38 0.45 2.20 16 4 N -0.60 -14.66 2.54 -791.22 -2.01 -16.67 16 5 C 0.53 19.63 6.79 87.66 0.60 20.23 16 6 O -0.55 -24.93 12.22 -3.03 -0.04 -24.97 16 7 C -0.12 -5.00 4.71 71.24 0.34 -4.67 16 8 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 9 C -0.54 -31.41 9.50 67.96 0.65 -30.76 16 10 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 11 C 0.01 0.72 5.49 84.86 0.47 1.19 16 12 N -0.91 -56.86 13.22 21.65 0.29 -56.57 16 13 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 C 0.15 2.91 3.43 46.18 0.16 3.07 16 18 H 0.15 1.57 7.86 -2.39 -0.02 1.55 16 19 C -0.15 -2.82 6.41 31.99 0.20 -2.62 16 20 C 0.11 1.74 6.47 86.86 0.56 2.30 16 21 N -0.61 -16.22 3.33 -811.02 -2.70 -18.92 16 22 C 0.54 16.64 7.63 87.66 0.67 17.31 16 23 O -0.60 -24.55 16.59 -3.05 -0.05 -24.60 16 24 C -0.19 -3.85 5.26 -11.54 -0.06 -3.91 16 25 C -0.15 -3.01 10.23 30.59 0.31 -2.69 16 26 C -0.14 -2.72 10.04 30.59 0.31 -2.41 16 27 C 0.10 2.78 6.13 86.67 0.53 3.31 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.91 7.22 -2.39 -0.02 0.89 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.47 6.44 -2.39 -0.02 1.45 16 34 H 0.12 1.05 7.94 -2.39 -0.02 1.03 16 35 H 0.10 3.76 7.19 -2.39 -0.02 3.74 16 36 H 0.11 3.90 7.40 -2.40 -0.02 3.88 16 37 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 38 H 0.06 1.74 5.92 -2.39 -0.01 1.72 16 39 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.34 7.67 -2.39 -0.02 1.33 16 41 H 0.11 0.95 8.14 -2.38 -0.02 0.94 16 42 H 0.16 1.95 7.78 -2.39 -0.02 1.93 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.96 7.67 -2.39 -0.02 1.95 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.03 1.28 6.19 -2.39 -0.01 1.27 16 Total: -1.00 -89.10 399.64 3.38 -85.72 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.94 Total: 20.75 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.08 Total: -1.05 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -4.42 Total: -92.16 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -0.09 Total: -49.57 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -89.10 3.38 -85.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296761534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.974 kcal (2) G-P(sol) polarization free energy of solvation -89.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds