Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.08999 * 109.46963 * 304.99806 * 3 2 1 5 5 C 1.52997 * 109.47217 * 184.99523 * 3 2 1 6 6 N 1.46502 * 109.47249 * 184.99541 * 5 3 2 7 7 C 1.34773 * 119.99955 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00470 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99975 * 180.02562 * 7 6 5 10 10 C 1.52997 * 110.34670 * 59.29582 * 9 7 6 11 11 C 1.51106 * 110.47597 * 296.94680 * 9 7 6 12 12 C 1.30533 * 111.09917 * 257.57503 * 11 9 7 13 13 C 1.51098 * 111.10809 * 0.02562 * 12 11 9 14 14 C 1.54633 * 110.38666 * 181.58706 * 9 7 6 15 15 N 1.46500 * 109.47259 * 64.99717 * 3 2 1 16 16 C 1.34780 * 119.99889 * 274.99979 * 15 3 2 17 17 O 1.21282 * 120.00051 * 359.97438 * 16 15 3 18 18 C 1.50696 * 119.99948 * 179.97438 * 16 15 3 19 19 S 1.81005 * 109.47059 * 180.02562 * 18 16 15 20 20 C 1.76206 * 100.00024 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99747 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99502 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00605 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99509 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46931 * 89.99838 * 24 22 20 26 26 H 1.48496 * 109.46898 * 209.99852 * 24 22 20 27 27 H 1.48494 * 109.46969 * 330.00151 * 24 22 20 28 28 H 1.09002 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47865 * 300.00306 * 1 2 3 30 30 H 1.09007 * 109.47144 * 60.00636 * 1 2 3 31 31 H 1.08995 * 109.47622 * 239.99246 * 2 1 3 32 32 H 1.08998 * 109.47003 * 119.99481 * 2 1 3 33 33 H 1.09003 * 109.47241 * 64.99685 * 5 3 2 34 34 H 1.08999 * 109.47351 * 304.99660 * 5 3 2 35 35 H 0.97005 * 119.99948 * 0.02562 * 6 5 3 36 36 H 1.09002 * 109.47153 * 182.28958 * 10 9 7 37 37 H 1.09001 * 109.46832 * 62.29149 * 10 9 7 38 38 H 1.09004 * 109.47261 * 302.29131 * 10 9 7 39 39 H 1.07998 * 124.45016 * 77.58303 * 11 9 7 40 40 H 1.07995 * 124.44381 * 180.02562 * 12 11 9 41 41 H 1.09000 * 110.38833 * 224.75748 * 13 12 11 42 42 H 1.08995 * 110.48671 * 102.42233 * 13 12 11 43 43 H 1.08996 * 111.03427 * 212.32188 * 14 9 7 44 44 H 1.09000 * 111.03953 * 336.25823 * 14 9 7 45 45 H 0.96997 * 120.00020 * 94.99895 * 15 3 2 46 46 H 1.08999 * 109.47464 * 300.00266 * 18 16 15 47 47 H 1.09001 * 109.46944 * 60.00245 * 18 16 15 48 48 H 0.97004 * 119.99732 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 7 4.0630 2.8168 -0.0059 7 6 5.3857 3.0629 -0.0857 8 8 6.1635 2.1483 -0.2570 9 6 5.8982 4.4748 0.0380 10 6 5.4933 5.0714 1.3873 11 6 5.3744 5.3283 -1.0936 12 6 6.2899 5.5133 -2.0054 13 6 7.5767 4.8135 -1.6344 14 6 7.4356 4.5059 -0.1253 15 7 1.6524 2.0975 1.2518 16 6 0.4350 2.6644 1.3668 17 8 -0.3393 2.6327 0.4339 18 6 0.0361 3.3377 2.6546 19 16 -1.6429 3.9953 2.4967 20 6 -1.8446 4.7066 4.0962 21 1 -1.0445 4.6457 4.8190 22 6 -3.0322 5.3441 4.4273 23 7 -4.0075 5.4178 3.5465 24 14 -3.2463 6.0976 6.1232 25 1 -2.7844 7.5087 6.0998 26 1 -4.6799 6.0522 6.5076 27 1 -2.4446 5.3307 7.1103 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8898 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8900 33 1 3.8499 1.0376 -1.0959 34 1 3.9953 0.8312 0.6661 35 1 3.4409 3.5484 0.1315 36 1 5.8356 6.1047 1.4451 37 1 5.9475 4.4926 2.1915 38 1 4.4081 5.0421 1.4867 39 1 4.3740 5.7323 -1.1415 40 1 6.1465 6.0907 -2.9067 41 1 8.4296 5.4691 -1.8096 42 1 7.6858 3.8896 -2.2022 43 1 7.8772 5.2984 0.4789 44 1 7.8748 3.5388 0.1194 45 1 2.2718 2.1232 1.9977 46 1 0.0671 2.6131 3.4683 47 1 0.7275 4.1530 2.8677 48 1 -4.8376 5.8631 3.7782 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297468604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -93.444047 kcal Electronic energy + Delta-G solvation = -27500.844074 eV Core-core repulsion = 23680.749554 eV Total energy + Delta-G solvation = -3820.094520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70670 -40.88190 -38.75032 -37.46050 -35.05267 -34.56842 -33.60361 -32.51946 -30.73988 -29.94096 -29.12954 -27.63220 -26.04563 -24.72070 -22.73728 -22.53496 -21.56675 -20.85103 -19.97004 -19.68177 -18.19568 -17.92633 -17.33648 -17.17057 -16.86397 -16.64857 -16.29551 -16.04621 -15.73861 -15.59973 -14.90644 -14.63316 -14.60540 -14.39592 -14.30716 -14.01402 -13.79806 -13.48888 -13.26923 -13.14643 -13.00280 -12.88268 -12.86603 -12.76058 -12.62878 -12.48720 -12.21126 -12.10700 -12.08380 -11.78370 -11.70795 -11.68539 -11.12924 -11.05135 -10.83550 -10.23863 -10.16763 -10.05183 -9.85494 -8.62556 -8.33521 -6.09870 1.16639 1.28878 1.42502 1.48263 1.58110 1.65139 1.68527 2.12626 2.27791 2.34904 3.00898 3.34480 3.48620 3.54091 3.63707 3.78931 3.99063 4.02186 4.06383 4.13666 4.29087 4.34449 4.39238 4.45124 4.52911 4.55647 4.56689 4.64477 4.79055 4.79412 4.83535 4.91739 4.94061 5.00707 5.05774 5.12409 5.18129 5.21452 5.32020 5.38814 5.43516 5.48828 5.52114 5.54865 5.88987 6.21098 6.44351 6.52490 7.08603 7.16462 7.30348 8.75294 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.002698 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.340704 B =10375.909875 C =12045.890479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.143 3.857 4 H 0.080 0.920 5 C 0.121 3.879 6 N -0.718 5.718 7 C 0.531 3.469 8 O -0.574 6.574 9 C -0.059 4.059 10 C -0.136 4.136 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.105 4.105 14 C -0.109 4.109 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.547 6.547 18 C -0.132 4.132 19 S -0.144 6.144 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.994 3.006 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.259 1.259 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.413 0.587 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.626 -3.901 -6.803 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.038 3.962 4 H 0.098 0.902 5 C -0.003 4.003 6 N -0.370 5.370 7 C 0.318 3.682 8 O -0.454 6.454 9 C -0.062 4.062 10 C -0.193 4.193 11 C -0.193 4.193 12 C -0.166 4.166 13 C -0.142 4.142 14 C -0.147 4.147 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.424 6.424 18 C -0.284 4.284 19 S 0.083 5.917 20 C -0.693 4.693 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.816 3.184 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.183 1.183 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.249 0.751 46 H 0.121 0.879 47 H 0.128 0.872 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.728 -4.587 -8.520 24.702 hybrid contribution 0.037 0.782 2.147 2.285 sum 22.765 -3.804 -6.373 23.944 Atomic orbital electron populations 1.21731 0.96330 1.00638 1.01362 1.21854 0.95427 0.94896 1.04074 1.21241 0.93114 0.94614 0.87275 0.90174 1.21623 0.91342 0.83666 1.03689 1.45957 1.07392 1.10134 1.73508 1.20704 0.81948 0.91007 0.74549 1.90657 1.56724 1.47349 1.50648 1.20674 0.97350 0.90524 0.97614 1.21825 1.02197 1.01903 0.93385 1.23193 1.00446 1.00114 0.95502 1.23625 0.95535 0.98305 0.99148 1.21431 0.97205 0.99927 0.95672 1.22502 0.92309 1.02997 0.96858 1.45822 1.15767 1.57813 1.17153 1.19857 0.81817 0.77588 0.88232 1.90726 1.51802 1.58856 1.40990 1.23391 1.02272 1.03695 0.98994 1.85531 1.12988 1.71915 1.21228 1.23201 1.04376 1.41940 0.99792 0.90087 1.26070 0.94422 0.95980 1.02584 1.70174 1.05676 1.42170 1.36732 0.85011 0.77674 0.78669 0.77004 1.19279 1.20499 1.18310 0.92453 0.94766 0.93936 0.88882 0.90225 0.89693 0.89955 0.75493 0.90158 0.91795 0.91570 0.84451 0.83928 0.89267 0.91544 0.88877 0.90800 0.75050 0.87891 0.87243 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.51 71.98 0.61 -3.10 16 2 C -0.12 -2.23 5.61 30.59 0.17 -2.06 16 3 C 0.14 2.66 2.42 44.99 0.11 2.77 16 4 H 0.08 1.84 7.58 -2.39 -0.02 1.82 16 5 C 0.12 1.91 5.23 86.38 0.45 2.37 16 6 N -0.72 -12.04 5.23 -463.05 -2.42 -14.46 16 7 C 0.53 10.71 6.54 87.66 0.57 11.28 16 8 O -0.57 -15.41 15.45 -3.04 -0.05 -15.45 16 9 C -0.06 -0.94 0.73 -52.99 -0.04 -0.98 16 10 C -0.14 -1.80 8.41 71.98 0.61 -1.20 16 11 C -0.17 -2.64 9.36 26.26 0.25 -2.40 16 12 C -0.15 -2.12 10.77 26.25 0.28 -1.84 16 13 C -0.11 -1.55 6.81 30.54 0.21 -1.34 16 14 C -0.11 -1.72 6.04 31.72 0.19 -1.52 16 15 N -0.71 -14.85 4.47 -442.54 -1.98 -16.83 16 16 C 0.54 17.29 6.42 87.66 0.56 17.85 16 17 O -0.55 -22.14 13.00 -3.04 -0.04 -22.18 16 18 C -0.13 -4.80 6.16 71.23 0.44 -4.37 16 19 S -0.14 -7.60 20.57 -56.49 -1.16 -8.76 16 20 C -0.55 -30.19 9.50 67.95 0.65 -29.55 16 21 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -54.94 13.22 21.65 0.29 -54.65 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.76 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.09 5.65 -2.39 -0.01 1.07 16 30 H 0.04 1.24 7.85 -2.38 -0.02 1.22 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.41 6.38 7.54 -92.70 -0.70 5.68 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.84 7.54 -2.38 -0.02 0.82 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.15 7.91 -2.39 -0.02 1.13 16 44 H 0.07 1.42 6.92 -2.39 -0.02 1.41 16 45 H 0.41 6.48 8.60 -92.71 -0.80 5.68 16 46 H 0.10 3.46 8.14 -2.40 -0.02 3.44 16 47 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 48 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -75.26 402.21 1.66 -73.60 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.53 Total: 26.79 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 5.53 Total: -12.82 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -4.12 Total: -85.94 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.09 Total: -37.63 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.16 Total: -8.76 kcal Total: -75.26 1.66 -73.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297468604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.842 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds