Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.08996 * 109.49900 * 54.93101 * 3 2 1 5 5 C 1.53194 * 109.49492 * 294.83467 * 3 2 1 6 6 N 1.46924 * 108.77334 * 185.41415 * 5 3 2 7 7 C 1.34787 * 120.63033 * 233.88527 * 6 5 3 8 8 O 1.21282 * 119.99956 * 359.72115 * 7 6 5 9 9 C 1.50697 * 119.99793 * 179.72182 * 7 6 5 10 10 S 1.80996 * 109.46855 * 180.02562 * 9 7 6 11 11 C 1.76196 * 100.00216 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99957 * 359.97438 * 11 10 9 13 13 C 1.38799 * 120.00554 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99594 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00183 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47041 * 60.00395 * 15 13 11 17 17 H 1.48508 * 109.46763 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47277 * 299.99824 * 15 13 11 19 19 C 1.46926 * 118.73991 * 53.61035 * 6 5 3 20 20 C 1.53185 * 108.77524 * 306.39104 * 19 6 5 21 21 C 1.53038 * 109.49548 * 175.00150 * 3 2 1 22 22 H 1.08993 * 109.45369 * 61.30259 * 21 3 2 23 23 N 1.46499 * 109.45819 * 301.33411 * 21 3 2 24 24 C 1.34773 * 119.99736 * 154.93549 * 23 21 3 25 25 O 1.21281 * 120.00447 * 0.02562 * 24 23 21 26 26 C 1.50710 * 119.99967 * 179.97438 * 24 23 21 27 27 C 1.53002 * 117.49794 * 248.74848 * 26 24 23 28 28 C 1.52997 * 117.49779 * 180.08758 * 26 24 23 29 29 H 1.08999 * 109.46902 * 299.99964 * 1 2 3 30 30 H 1.09003 * 109.47109 * 60.00630 * 1 2 3 31 31 H 1.09000 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46902 * 240.00036 * 2 1 3 33 33 H 1.08996 * 109.47320 * 119.99686 * 2 1 3 34 34 H 1.09004 * 109.58535 * 65.62755 * 5 3 2 35 35 H 1.08994 * 109.59149 * 305.20232 * 5 3 2 36 36 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 37 37 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 38 38 H 0.97004 * 119.99793 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.58178 * 66.18066 * 19 6 5 40 40 H 1.09004 * 109.58598 * 186.60071 * 19 6 5 41 41 H 1.08998 * 109.50031 * 174.58725 * 20 19 6 42 42 H 1.09001 * 109.49616 * 294.65180 * 20 19 6 43 43 H 0.96998 * 119.99725 * 334.93296 * 23 21 3 44 44 H 1.08994 * 115.54690 * 34.41586 * 26 24 23 45 45 H 1.08995 * 117.50030 * 359.97438 * 27 26 24 46 46 H 1.09001 * 117.49506 * 145.02331 * 27 26 24 47 47 H 1.09003 * 117.49554 * 214.97816 * 28 26 24 48 48 H 1.09000 * 117.49838 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6386 2.1267 -1.3106 6 7 2.2451 3.4643 -1.3508 7 6 1.4849 4.5570 -1.5624 8 8 0.2889 4.4410 -1.7268 9 6 2.1210 5.9227 -1.5946 10 16 0.8483 7.1741 -1.8950 11 6 1.8414 8.6295 -1.8841 12 1 2.9066 8.5551 -1.7217 13 6 1.2549 9.8716 -2.0832 14 7 -0.0434 9.9622 -2.2806 15 14 2.3078 11.4145 -2.0709 16 1 3.3302 11.3246 -3.1440 17 1 1.4477 12.6025 -2.3042 18 1 2.9821 11.5432 -0.7542 19 6 3.6953 3.5888 -1.1499 20 6 4.0736 2.8882 0.1588 21 6 3.5652 1.4450 0.1257 22 1 4.0007 0.9262 -0.7282 23 7 3.9542 0.7621 1.3620 24 6 5.1722 0.1943 1.4637 25 8 5.9466 0.2491 0.5318 26 6 5.5726 -0.5078 2.7357 27 6 6.6662 0.1410 3.5866 28 6 6.9691 -1.1303 2.7895 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5533 2.2160 -1.3586 35 1 1.9965 1.5377 -2.1549 36 1 2.6058 6.1204 -0.6386 37 1 2.8626 5.9594 -2.3925 38 1 -0.4534 10.8303 -2.4193 39 1 4.2209 3.1189 -1.9812 40 1 3.9670 4.6428 -1.0920 41 1 5.1577 2.8895 0.2719 42 1 3.6197 3.4152 0.9980 43 1 3.3350 0.7186 2.1074 44 1 4.7696 -1.0270 3.2587 45 1 7.0964 1.0754 3.2262 46 1 6.5829 0.0481 4.6694 47 1 7.0850 -2.0590 3.3484 48 1 7.5982 -1.0324 1.9048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298961523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -59.782979 kcal Electronic energy + Delta-G solvation = -27507.169069 eV Core-core repulsion = 23688.534202 eV Total energy + Delta-G solvation = -3818.634867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77816 -39.72058 -37.92269 -36.37796 -34.96042 -34.27117 -32.43084 -31.27049 -30.27163 -28.57541 -25.87866 -25.44003 -24.49537 -23.66053 -22.84830 -21.69506 -20.83207 -20.24761 -19.18157 -17.82502 -17.64817 -17.00716 -16.26864 -15.93697 -15.59573 -15.34938 -14.82223 -14.80661 -14.69888 -14.40819 -14.27064 -13.91703 -13.75330 -13.36058 -13.22886 -12.95965 -12.87031 -12.53367 -12.25095 -12.22223 -12.00629 -11.97925 -11.78196 -11.37984 -11.08799 -11.05572 -11.04111 -11.00530 -10.97035 -10.93633 -10.76868 -10.63332 -10.13301 -9.81652 -9.43407 -9.28145 -9.06152 -8.56299 -8.23452 -6.50547 -6.21723 -3.92435 2.17507 2.73427 2.91118 3.05825 3.23416 3.25606 3.28957 3.44831 3.58394 4.18257 4.20154 4.30598 4.37122 4.44906 4.49303 4.57360 4.70519 4.87237 4.88434 4.94425 5.06241 5.13320 5.14583 5.17320 5.21103 5.29548 5.31332 5.41745 5.50880 5.53247 5.56153 5.60627 5.69334 5.69953 5.70482 5.76999 5.85741 5.86922 5.91207 6.02115 6.10297 6.11389 6.20231 6.61253 7.17779 7.52865 7.59232 7.92053 8.34794 8.54040 9.23455 10.85609 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.002447 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.674118 B =11438.543866 C =12941.723028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.110 4.110 4 H 0.082 0.918 5 C 0.121 3.879 6 N -0.621 5.621 7 C 0.536 3.464 8 O -0.516 6.516 9 C -0.151 4.151 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.111 3.889 20 C -0.145 4.145 21 C 0.152 3.848 22 H 0.091 0.909 23 N -0.720 5.720 24 C 0.543 3.457 25 O -0.539 6.539 26 C -0.197 4.197 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.401 0.599 44 H 0.123 0.877 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 -24.031 11.103 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.130 4.130 4 H 0.101 0.899 5 C -0.002 4.002 6 N -0.358 5.358 7 C 0.324 3.676 8 O -0.391 6.391 9 C -0.302 4.302 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.013 4.013 20 C -0.184 4.184 21 C 0.047 3.953 22 H 0.109 0.891 23 N -0.370 5.370 24 C 0.330 3.670 25 O -0.416 6.416 26 C -0.218 4.218 27 C -0.190 4.190 28 C -0.186 4.186 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.235 0.765 44 H 0.141 0.859 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.907 -24.023 10.125 27.549 hybrid contribution 1.760 1.108 0.685 2.190 sum 10.668 -22.915 10.809 27.490 Atomic orbital electron populations 1.21840 0.95229 1.01690 1.02630 1.21505 0.96325 0.95030 1.02367 1.21880 0.93995 0.97122 0.99977 0.89936 1.21563 1.00727 0.82448 0.95487 1.48146 1.07851 1.06276 1.73483 1.20337 0.86766 0.85358 0.75101 1.90688 1.14639 1.85998 1.47737 1.23557 1.05611 0.96194 1.04800 1.85385 1.08409 0.95809 1.93793 1.22816 0.95914 0.92410 1.57223 0.91004 1.24990 0.95313 0.98729 0.94534 1.70010 1.09502 1.25408 1.45362 0.86229 0.79697 0.80845 0.78764 1.19919 1.20809 1.19955 1.21679 0.80552 1.02353 0.96686 1.22325 1.02030 0.95337 0.98716 1.21004 0.94235 0.92564 0.87480 0.89129 1.46009 1.16518 1.56691 1.17760 1.19662 0.81442 0.77872 0.88055 1.90708 1.51263 1.59798 1.39844 1.22216 0.95071 1.06319 0.98206 1.22959 0.99756 0.98121 0.98159 1.22963 0.95535 0.97074 1.02983 0.92529 0.91998 0.92709 0.91666 0.91743 0.88104 0.91599 0.89290 0.89224 0.92135 0.91155 0.88793 0.90196 0.90999 0.76496 0.85946 0.88162 0.87750 0.87949 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.11 -0.84 5.31 -26.73 -0.14 -0.98 16 3 C -0.11 -0.98 1.92 -90.50 -0.17 -1.15 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 5 C 0.12 1.41 5.33 -3.71 -0.02 1.39 16 6 N -0.62 -8.66 2.97 -172.77 -0.51 -9.17 16 7 C 0.54 10.08 7.72 -10.98 -0.08 10.00 16 8 O -0.52 -11.60 15.27 5.56 0.08 -11.52 16 9 C -0.15 -3.06 4.50 36.00 0.16 -2.90 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 15 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 19 C 0.11 1.26 6.34 -3.71 -0.02 1.24 16 20 C -0.14 -1.45 5.65 -26.61 -0.15 -1.60 16 21 C 0.15 1.38 1.88 -67.89 -0.13 1.25 16 22 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 23 N -0.72 -5.49 4.28 -53.76 -0.23 -5.72 16 24 C 0.54 5.07 7.58 -10.98 -0.08 4.98 16 25 O -0.54 -7.13 15.92 5.56 0.09 -7.04 16 26 C -0.20 -1.28 6.19 -91.77 -0.57 -1.85 16 27 C -0.15 -0.89 10.24 -26.69 -0.27 -1.16 16 28 C -0.15 -0.94 10.05 -26.69 -0.27 -1.21 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.54 6.70 -51.93 -0.35 0.19 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.41 7.22 -51.93 -0.37 0.04 16 34 H 0.10 1.35 5.73 -51.93 -0.30 1.05 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.67 7.70 -51.92 -0.40 1.27 16 37 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.40 2.18 8.32 -40.82 -0.34 1.84 16 44 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -35.33 399.08 -10.14 -45.47 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.89 Total: 0.60 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.19 Total: -5.75 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.01 Total: -40.29 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.33 -10.14 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298961523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.316 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds