Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.08996 * 109.49900 * 54.93101 * 3 2 1 5 5 C 1.53194 * 109.49492 * 294.83467 * 3 2 1 6 6 N 1.46924 * 108.77334 * 185.41415 * 5 3 2 7 7 C 1.34787 * 120.63033 * 233.88527 * 6 5 3 8 8 O 1.21282 * 119.99956 * 359.72115 * 7 6 5 9 9 C 1.50697 * 119.99793 * 179.72182 * 7 6 5 10 10 S 1.80996 * 109.46855 * 180.02562 * 9 7 6 11 11 C 1.76196 * 100.00216 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99957 * 359.97438 * 11 10 9 13 13 C 1.38799 * 120.00554 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99594 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00183 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47041 * 60.00395 * 15 13 11 17 17 H 1.48508 * 109.46763 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47277 * 299.99824 * 15 13 11 19 19 C 1.46926 * 118.73991 * 53.61035 * 6 5 3 20 20 C 1.53185 * 108.77524 * 306.39104 * 19 6 5 21 21 C 1.53038 * 109.49548 * 175.00150 * 3 2 1 22 22 H 1.08993 * 109.45369 * 61.30259 * 21 3 2 23 23 N 1.46499 * 109.45819 * 301.33411 * 21 3 2 24 24 C 1.34773 * 119.99736 * 154.93549 * 23 21 3 25 25 O 1.21281 * 120.00447 * 0.02562 * 24 23 21 26 26 C 1.50710 * 119.99967 * 179.97438 * 24 23 21 27 27 C 1.53002 * 117.49794 * 248.74848 * 26 24 23 28 28 C 1.52997 * 117.49779 * 180.08758 * 26 24 23 29 29 H 1.08999 * 109.46902 * 299.99964 * 1 2 3 30 30 H 1.09003 * 109.47109 * 60.00630 * 1 2 3 31 31 H 1.09000 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46902 * 240.00036 * 2 1 3 33 33 H 1.08996 * 109.47320 * 119.99686 * 2 1 3 34 34 H 1.09004 * 109.58535 * 65.62755 * 5 3 2 35 35 H 1.08994 * 109.59149 * 305.20232 * 5 3 2 36 36 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 37 37 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 38 38 H 0.97004 * 119.99793 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.58178 * 66.18066 * 19 6 5 40 40 H 1.09004 * 109.58598 * 186.60071 * 19 6 5 41 41 H 1.08998 * 109.50031 * 174.58725 * 20 19 6 42 42 H 1.09001 * 109.49616 * 294.65180 * 20 19 6 43 43 H 0.96998 * 119.99725 * 334.93296 * 23 21 3 44 44 H 1.08994 * 115.54690 * 34.41586 * 26 24 23 45 45 H 1.08995 * 117.50030 * 359.97438 * 27 26 24 46 46 H 1.09001 * 117.49506 * 145.02331 * 27 26 24 47 47 H 1.09003 * 117.49554 * 214.97816 * 28 26 24 48 48 H 1.09000 * 117.49838 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6386 2.1267 -1.3106 6 7 2.2451 3.4643 -1.3508 7 6 1.4849 4.5570 -1.5624 8 8 0.2889 4.4410 -1.7268 9 6 2.1210 5.9227 -1.5946 10 16 0.8483 7.1741 -1.8950 11 6 1.8414 8.6295 -1.8841 12 1 2.9066 8.5551 -1.7217 13 6 1.2549 9.8716 -2.0832 14 7 -0.0434 9.9622 -2.2806 15 14 2.3078 11.4145 -2.0709 16 1 3.3302 11.3246 -3.1440 17 1 1.4477 12.6025 -2.3042 18 1 2.9821 11.5432 -0.7542 19 6 3.6953 3.5888 -1.1499 20 6 4.0736 2.8882 0.1588 21 6 3.5652 1.4450 0.1257 22 1 4.0007 0.9262 -0.7282 23 7 3.9542 0.7621 1.3620 24 6 5.1722 0.1943 1.4637 25 8 5.9466 0.2491 0.5318 26 6 5.5726 -0.5078 2.7357 27 6 6.6662 0.1410 3.5866 28 6 6.9691 -1.1303 2.7895 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5533 2.2160 -1.3586 35 1 1.9965 1.5377 -2.1549 36 1 2.6058 6.1204 -0.6386 37 1 2.8626 5.9594 -2.3925 38 1 -0.4534 10.8303 -2.4193 39 1 4.2209 3.1189 -1.9812 40 1 3.9670 4.6428 -1.0920 41 1 5.1577 2.8895 0.2719 42 1 3.6197 3.4152 0.9980 43 1 3.3350 0.7186 2.1074 44 1 4.7696 -1.0270 3.2587 45 1 7.0964 1.0754 3.2262 46 1 6.5829 0.0481 4.6694 47 1 7.0850 -2.0590 3.3484 48 1 7.5982 -1.0324 1.9048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298961523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -82.308568 kcal Electronic energy + Delta-G solvation = -27508.145852 eV Core-core repulsion = 23688.534202 eV Total energy + Delta-G solvation = -3819.611650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68790 -40.75281 -38.99820 -37.00419 -36.02064 -35.02484 -34.58904 -32.27351 -31.48261 -29.68668 -27.70352 -26.66336 -25.33898 -24.49159 -23.29570 -22.51298 -21.62415 -21.08277 -20.41581 -19.53895 -18.44575 -18.24908 -17.23919 -17.08214 -16.88003 -16.68021 -16.24959 -15.94314 -15.58218 -15.41708 -15.18183 -14.93955 -14.78458 -14.55114 -14.42988 -14.27046 -13.74293 -13.52784 -13.46335 -13.20596 -13.12276 -13.06654 -12.87577 -12.65818 -12.63526 -12.42908 -12.24467 -11.82246 -11.69927 -11.66925 -11.51493 -11.49607 -11.38915 -11.13467 -10.94512 -10.86462 -10.28757 -10.08211 -9.75426 -8.67728 -8.34943 -6.13245 1.24218 1.43329 1.44557 1.49765 1.53406 1.54630 2.03610 2.12454 2.26921 2.95074 2.99000 3.22320 3.42137 3.63535 3.71959 3.75775 3.82134 3.89226 4.00111 4.01753 4.12554 4.23007 4.24310 4.27575 4.34889 4.42922 4.43451 4.54582 4.59953 4.67787 4.75226 4.76534 4.87300 4.92280 4.94187 4.95270 5.06061 5.13565 5.16015 5.23942 5.27712 5.40623 5.41068 5.47416 5.54280 6.18836 6.22412 6.55282 7.06124 7.10365 7.25175 8.73961 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.002447 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.674118 B =11438.543866 C =12941.723028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.107 4.107 3 C -0.096 4.096 4 H 0.080 0.920 5 C 0.116 3.884 6 N -0.607 5.607 7 C 0.536 3.464 8 O -0.562 6.562 9 C -0.126 4.126 10 S -0.148 6.148 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.998 3.002 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.262 1.262 19 C 0.106 3.894 20 C -0.137 4.137 21 C 0.158 3.842 22 H 0.080 0.920 23 N -0.707 5.707 24 C 0.539 3.461 25 O -0.583 6.583 26 C -0.198 4.198 27 C -0.146 4.146 28 C -0.155 4.155 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.271 0.729 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.415 0.585 44 H 0.152 0.848 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.286 -25.224 12.827 30.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.116 4.116 4 H 0.098 0.902 5 C -0.006 4.006 6 N -0.341 5.341 7 C 0.323 3.677 8 O -0.440 6.440 9 C -0.277 4.277 10 S 0.079 5.921 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.017 4.017 20 C -0.176 4.176 21 C 0.053 3.947 22 H 0.098 0.902 23 N -0.357 5.357 24 C 0.327 3.673 25 O -0.464 6.464 26 C -0.218 4.218 27 C -0.183 4.183 28 C -0.192 4.192 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.251 0.749 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.147 0.853 47 H 0.143 0.857 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.911 -25.262 11.885 29.974 hybrid contribution 1.196 1.340 0.147 1.802 sum 12.107 -23.922 12.032 29.387 Atomic orbital electron populations 1.21832 0.95510 1.02233 1.01787 1.21471 0.95944 0.93752 1.03340 1.21740 0.93875 0.97918 0.98094 0.90190 1.21762 0.99708 0.81356 0.97802 1.48105 1.08702 1.05902 1.71341 1.20085 0.86337 0.85895 0.75337 1.90674 1.16469 1.86556 1.50321 1.23382 1.03282 0.94848 1.06148 1.85546 1.13249 0.98992 1.94311 1.23153 0.96297 0.92798 1.57193 0.90007 1.26120 0.96683 1.02561 0.93739 1.70177 1.11648 1.26375 1.46473 0.85018 0.77776 0.75851 0.79450 1.18722 1.20347 1.18632 1.21904 0.78712 1.02878 0.98208 1.22233 1.01936 0.95711 0.97707 1.20821 0.93931 0.92006 0.87960 0.90165 1.45870 1.16448 1.55797 1.17608 1.20194 0.81142 0.77442 0.88498 1.90693 1.52543 1.61515 1.41606 1.22304 0.95995 1.06456 0.97077 1.23029 0.98813 0.97170 0.99332 1.23006 0.95145 0.98438 1.02599 0.92707 0.93560 0.91476 0.91486 0.89920 0.89947 0.90096 0.87523 0.87632 0.91978 0.89583 0.88833 0.90223 0.91028 0.74851 0.83032 0.89649 0.85314 0.85722 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.67 71.98 0.70 -1.51 16 2 C -0.11 -1.35 5.31 30.60 0.16 -1.19 16 3 C -0.10 -1.56 1.92 -10.71 -0.02 -1.58 16 4 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 5 C 0.12 2.62 5.33 86.36 0.46 3.08 16 6 N -0.61 -16.44 2.97 -818.90 -2.43 -18.88 16 7 C 0.54 20.28 7.72 87.65 0.68 20.96 16 8 O -0.56 -26.11 15.27 -3.04 -0.05 -26.15 16 9 C -0.13 -5.08 4.50 71.24 0.32 -4.76 16 10 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 11 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 12 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 13 C 0.01 0.79 5.49 84.86 0.47 1.26 16 14 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 15 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 19 C 0.11 2.24 6.34 86.36 0.55 2.78 16 20 C -0.14 -2.49 5.65 30.67 0.17 -2.32 16 21 C 0.16 2.58 1.88 45.02 0.08 2.66 16 22 H 0.08 1.56 7.58 -2.39 -0.02 1.55 16 23 N -0.71 -9.13 4.28 -442.40 -1.90 -11.02 16 24 C 0.54 9.10 7.58 87.66 0.66 9.76 16 25 O -0.58 -15.02 15.92 -3.03 -0.05 -15.07 16 26 C -0.20 -2.05 6.19 -11.54 -0.07 -2.12 16 27 C -0.15 -1.36 10.24 30.62 0.31 -1.05 16 28 C -0.15 -1.68 10.05 30.62 0.31 -1.37 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.80 6.70 -2.39 -0.02 0.78 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.78 7.22 -2.39 -0.02 0.77 16 34 H 0.08 2.24 5.73 -2.38 -0.01 2.23 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 3.91 7.70 -2.40 -0.02 3.89 16 37 H 0.11 3.91 7.94 -2.40 -0.02 3.89 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 2.01 5.93 -2.38 -0.01 1.99 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.41 3.22 8.32 -92.71 -0.77 2.45 16 44 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.08 1.34 7.67 -2.39 -0.02 1.32 16 Total: -1.00 -79.79 399.08 2.34 -77.44 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.19 Total: 19.21 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.43 Total: -6.05 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -4.04 Total: -85.62 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.09 Total: -41.22 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -79.79 2.34 -77.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298961523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.864 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds