Wall clock time and date at job start Sat Apr 11 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 H 1.09004 * 109.49647 * 54.93432 * 3 2 1 5 5 C 1.52758 * 109.56735 * 294.96645 * 3 2 1 6 6 N 1.46927 * 109.01004 * 185.55360 * 5 3 2 7 7 C 1.34775 * 120.62722 * 233.58541 * 6 5 3 8 8 O 1.21282 * 120.00577 * 359.71704 * 7 6 5 9 9 C 1.50703 * 119.99768 * 179.72287 * 7 6 5 10 10 S 1.81000 * 109.47038 * 179.97438 * 9 7 6 11 11 C 1.76209 * 99.99875 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99972 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99599 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99397 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00627 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47326 * 270.00578 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00328 * 15 13 11 18 18 H 1.48498 * 109.47210 * 150.00039 * 15 13 11 19 19 C 1.46918 * 118.73745 * 53.30786 * 6 5 3 20 20 C 1.53197 * 108.77765 * 306.64259 * 19 6 5 21 21 C 1.53034 * 109.30966 * 54.63498 * 20 19 6 22 22 H 1.09001 * 109.45718 * 178.62783 * 21 20 19 23 23 N 1.46504 * 109.45959 * 58.65876 * 21 20 19 24 24 C 1.34776 * 120.00393 * 84.99787 * 23 21 20 25 25 O 1.21280 * 119.99779 * 0.02562 * 24 23 21 26 26 C 1.50693 * 120.00057 * 180.02562 * 24 23 21 27 27 C 1.53006 * 117.49953 * 248.61778 * 26 24 23 28 28 C 1.52999 * 60.00164 * 252.51431 * 27 26 24 29 29 H 1.09003 * 109.46873 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47234 * 299.99709 * 1 2 3 31 31 H 1.08992 * 109.46789 * 59.99744 * 1 2 3 32 32 H 1.08993 * 109.47314 * 240.00063 * 2 1 3 33 33 H 1.09004 * 109.47248 * 119.99743 * 2 1 3 34 34 H 1.09003 * 109.51179 * 65.67025 * 5 3 2 35 35 H 1.09004 * 109.43061 * 305.39134 * 5 3 2 36 36 H 1.09000 * 109.47235 * 59.99532 * 9 7 6 37 37 H 1.09005 * 109.46867 * 299.99572 * 9 7 6 38 38 H 0.97005 * 119.99723 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.58613 * 66.43529 * 19 6 5 40 40 H 1.09006 * 109.58827 * 186.85473 * 19 6 5 41 41 H 1.09003 * 109.49370 * 174.58802 * 20 19 6 42 42 H 1.08999 * 109.49664 * 294.64987 * 20 19 6 43 43 H 0.97000 * 119.99674 * 264.99542 * 23 21 20 44 44 H 1.09002 * 115.55632 * 34.33224 * 26 24 23 45 45 H 1.08999 * 117.49658 * 0.02562 * 27 26 24 46 46 H 1.09001 * 117.49602 * 145.02193 * 27 26 24 47 47 H 1.09000 * 117.49806 * 252.51023 * 28 27 26 48 48 H 1.08991 * 117.49978 * 107.49145 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6377 2.1274 -1.3049 6 7 2.2451 3.4644 -1.3506 7 6 1.4856 4.5565 -1.5671 8 8 0.2896 4.4406 -1.7315 9 6 2.1225 5.9218 -1.6051 10 16 0.8508 7.1725 -1.9127 11 6 1.8447 8.6275 -1.9060 12 1 2.9095 8.5534 -1.7415 13 6 1.2588 9.8690 -2.1111 14 7 2.0014 10.9559 -2.1066 15 14 -0.5830 9.9974 -2.3950 16 1 -0.8678 9.8994 -3.8490 17 1 -1.2720 8.8930 -1.6801 18 1 -1.0733 11.3015 -1.8812 19 6 3.6952 3.5888 -1.1498 20 6 4.0736 2.8882 0.1590 21 6 3.5652 1.4451 0.1258 22 1 3.8544 0.9371 1.0458 23 7 4.1508 0.7476 -1.0218 24 6 5.3685 0.1798 -0.9157 25 8 5.9793 0.2459 0.1299 26 6 5.9709 -0.5371 -2.0963 27 6 6.1191 -2.0569 -1.9996 28 6 7.3561 -1.1607 -1.9125 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5523 2.2174 -1.3492 35 1 1.9922 1.5359 -2.1491 36 1 2.8644 5.9546 -2.4029 37 1 2.6072 6.1233 -0.6497 38 1 1.5921 11.8235 -2.2503 39 1 4.2208 3.1191 -1.9811 40 1 3.9670 4.6429 -1.0918 41 1 5.1578 2.8895 0.2720 42 1 3.6197 3.4152 0.9982 43 1 3.6620 0.6944 -1.8579 44 1 5.7346 -0.1154 -3.0733 45 1 5.7804 -2.5382 -1.0821 46 1 5.9799 -2.6353 -2.9129 47 1 8.0307 -1.1494 -2.7686 48 1 7.8314 -1.0523 -0.9378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298961526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:11 Heat of formation + Delta-G solvation = -57.415918 kcal Electronic energy + Delta-G solvation = -27880.894384 eV Core-core repulsion = 24062.362161 eV Total energy + Delta-G solvation = -3818.532223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01674 -39.71389 -38.06094 -36.35654 -34.89535 -34.18186 -32.45385 -31.36967 -30.40248 -28.73075 -25.82908 -25.54235 -24.59783 -24.32240 -22.84563 -21.69817 -20.65070 -20.26121 -19.03446 -18.01303 -17.67663 -16.87846 -16.29339 -16.00078 -15.74095 -15.36826 -15.19697 -14.99644 -14.57486 -14.46375 -14.14440 -13.89574 -13.76544 -13.59076 -13.45509 -12.99477 -12.87815 -12.82010 -12.42189 -12.32179 -11.97702 -11.92151 -11.77261 -11.52209 -11.27083 -11.11289 -11.04307 -11.04045 -11.01956 -10.91603 -10.70174 -10.57996 -10.12527 -9.87500 -9.52897 -9.36351 -9.01995 -8.64628 -8.51281 -6.94094 -6.30386 -4.02407 2.18365 2.65593 2.78621 2.88173 3.15253 3.31636 3.45610 3.48830 3.56332 4.15674 4.30314 4.31352 4.39278 4.41425 4.46258 4.51053 4.61689 4.73566 4.79326 4.88426 4.93780 5.00348 5.08084 5.08672 5.16869 5.18284 5.24153 5.33569 5.38423 5.50101 5.51556 5.60239 5.61237 5.64168 5.70847 5.71539 5.75534 5.78238 5.86667 5.90026 5.96598 6.03805 6.21290 6.49460 7.16917 7.39505 7.92506 7.92636 8.38152 8.40138 9.15724 10.78832 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002575 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.667693 B =10871.863356 C =11965.110801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.111 4.111 4 H 0.093 0.907 5 C 0.117 3.883 6 N -0.618 5.618 7 C 0.535 3.465 8 O -0.518 6.518 9 C -0.122 4.122 10 S -0.143 6.143 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.235 1.235 18 H -0.274 1.274 19 C 0.109 3.891 20 C -0.148 4.148 21 C 0.153 3.847 22 H 0.092 0.908 23 N -0.718 5.718 24 C 0.545 3.455 25 O -0.540 6.540 26 C -0.197 4.197 27 C -0.153 4.153 28 C -0.147 4.147 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.400 0.600 44 H 0.123 0.877 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -27.647 1.367 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.131 4.131 4 H 0.111 0.889 5 C -0.006 4.006 6 N -0.354 5.354 7 C 0.323 3.677 8 O -0.393 6.393 9 C -0.272 4.272 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.159 1.159 18 H -0.199 1.199 19 C -0.014 4.014 20 C -0.187 4.187 21 C 0.048 3.952 22 H 0.110 0.890 23 N -0.370 5.370 24 C 0.331 3.669 25 O -0.417 6.417 26 C -0.218 4.218 27 C -0.190 4.190 28 C -0.185 4.185 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.236 0.764 44 H 0.141 0.859 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.911 -27.537 1.861 28.034 hybrid contribution 0.576 0.588 -0.438 0.933 sum 5.486 -26.949 1.423 27.538 Atomic orbital electron populations 1.21841 0.95277 1.01726 1.02565 1.21485 0.96278 0.94929 1.02370 1.21817 0.94138 0.97224 0.99929 0.88923 1.21493 1.00790 0.82520 0.95807 1.48081 1.07938 1.06184 1.73197 1.20305 0.86778 0.85394 0.75228 1.90688 1.14610 1.85985 1.47985 1.23313 1.03819 0.94544 1.05545 1.84786 1.12553 0.99648 1.94645 1.22302 0.96841 0.90712 1.56972 0.89405 1.24717 0.98717 0.94530 0.93364 1.69942 1.36053 0.98221 1.47437 0.86732 0.85320 0.79558 0.80221 1.19220 1.15927 1.19940 1.21703 0.80245 1.02353 0.97141 1.22328 1.02406 0.95356 0.98594 1.20963 0.91951 0.92363 0.89905 0.89037 1.46060 1.18736 1.56211 1.16021 1.19643 0.80899 0.77934 0.88419 1.90703 1.61001 1.59932 1.30066 1.22222 1.03456 0.97233 0.98910 1.22933 1.02113 0.90024 1.03976 1.22951 0.89735 1.01279 1.04499 0.92682 0.92443 0.92146 0.91814 0.91580 0.88163 0.92255 0.88594 0.88491 0.91930 0.91504 0.88947 0.89926 0.90086 0.76443 0.85864 0.88292 0.87798 0.87895 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.11 -0.77 5.19 -26.73 -0.14 -0.91 16 3 C -0.11 -0.92 2.12 -90.72 -0.19 -1.11 16 4 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 5 C 0.12 1.18 5.01 -3.93 -0.02 1.16 16 6 N -0.62 -7.74 2.98 -173.03 -0.52 -8.25 16 7 C 0.53 9.30 7.72 -10.98 -0.08 9.22 16 8 O -0.52 -10.81 15.28 5.56 0.08 -10.72 16 9 C -0.12 -2.33 4.50 36.01 0.16 -2.17 16 10 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 11 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 12 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 13 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 15 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 19 C 0.11 1.13 6.09 -3.71 -0.02 1.10 16 20 C -0.15 -1.40 5.77 -26.61 -0.15 -1.55 16 21 C 0.15 1.30 2.21 -67.89 -0.15 1.15 16 22 H 0.09 0.89 7.58 -51.93 -0.39 0.49 16 23 N -0.72 -5.36 3.68 -53.77 -0.20 -5.56 16 24 C 0.54 4.99 7.58 -10.99 -0.08 4.91 16 25 O -0.54 -6.98 15.92 5.56 0.09 -6.90 16 26 C -0.20 -1.31 6.19 -91.77 -0.57 -1.88 16 27 C -0.15 -0.85 10.23 -26.73 -0.27 -1.12 16 28 C -0.15 -0.95 10.04 -26.73 -0.27 -1.22 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 6.70 -51.93 -0.35 0.13 16 32 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 1.21 5.72 -51.93 -0.30 0.92 16 35 H 0.06 0.48 6.64 -51.93 -0.34 0.14 16 36 H 0.10 1.72 7.94 -51.92 -0.41 1.31 16 37 H 0.10 1.74 7.69 -51.91 -0.40 1.34 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.07 0.61 7.74 -51.93 -0.40 0.21 16 40 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.40 2.38 6.76 -40.82 -0.28 2.10 16 44 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.11 0.87 7.67 -51.93 -0.40 0.48 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -34.60 392.76 -9.56 -44.15 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.78 Total: 0.76 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.22 Total: -5.10 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.06 Total: -39.51 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.17 Total: -17.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.60 -9.56 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298961526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.262 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds