Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 H 1.09004 * 109.49647 * 54.93432 * 3 2 1 5 5 C 1.52758 * 109.56735 * 294.96645 * 3 2 1 6 6 N 1.46927 * 109.01004 * 185.55360 * 5 3 2 7 7 C 1.34775 * 120.62722 * 233.58541 * 6 5 3 8 8 O 1.21282 * 120.00577 * 359.71704 * 7 6 5 9 9 C 1.50703 * 119.99768 * 179.72287 * 7 6 5 10 10 S 1.81000 * 109.47038 * 179.97438 * 9 7 6 11 11 C 1.76209 * 99.99875 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99972 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99599 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99397 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00627 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47326 * 270.00578 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00328 * 15 13 11 18 18 H 1.48498 * 109.47210 * 150.00039 * 15 13 11 19 19 C 1.46918 * 118.73745 * 53.30786 * 6 5 3 20 20 C 1.53197 * 108.77765 * 306.64259 * 19 6 5 21 21 C 1.53034 * 109.30966 * 54.63498 * 20 19 6 22 22 H 1.09001 * 109.45718 * 178.62783 * 21 20 19 23 23 N 1.46504 * 109.45959 * 58.65876 * 21 20 19 24 24 C 1.34776 * 120.00393 * 84.99787 * 23 21 20 25 25 O 1.21280 * 119.99779 * 0.02562 * 24 23 21 26 26 C 1.50693 * 120.00057 * 180.02562 * 24 23 21 27 27 C 1.53006 * 117.49953 * 248.61778 * 26 24 23 28 28 C 1.52999 * 60.00164 * 252.51431 * 27 26 24 29 29 H 1.09003 * 109.46873 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47234 * 299.99709 * 1 2 3 31 31 H 1.08992 * 109.46789 * 59.99744 * 1 2 3 32 32 H 1.08993 * 109.47314 * 240.00063 * 2 1 3 33 33 H 1.09004 * 109.47248 * 119.99743 * 2 1 3 34 34 H 1.09003 * 109.51179 * 65.67025 * 5 3 2 35 35 H 1.09004 * 109.43061 * 305.39134 * 5 3 2 36 36 H 1.09000 * 109.47235 * 59.99532 * 9 7 6 37 37 H 1.09005 * 109.46867 * 299.99572 * 9 7 6 38 38 H 0.97005 * 119.99723 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.58613 * 66.43529 * 19 6 5 40 40 H 1.09006 * 109.58827 * 186.85473 * 19 6 5 41 41 H 1.09003 * 109.49370 * 174.58802 * 20 19 6 42 42 H 1.08999 * 109.49664 * 294.64987 * 20 19 6 43 43 H 0.97000 * 119.99674 * 264.99542 * 23 21 20 44 44 H 1.09002 * 115.55632 * 34.33224 * 26 24 23 45 45 H 1.08999 * 117.49658 * 0.02562 * 27 26 24 46 46 H 1.09001 * 117.49602 * 145.02193 * 27 26 24 47 47 H 1.09000 * 117.49806 * 252.51023 * 28 27 26 48 48 H 1.08991 * 117.49978 * 107.49145 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6377 2.1274 -1.3049 6 7 2.2451 3.4644 -1.3506 7 6 1.4856 4.5565 -1.5671 8 8 0.2896 4.4406 -1.7315 9 6 2.1225 5.9218 -1.6051 10 16 0.8508 7.1725 -1.9127 11 6 1.8447 8.6275 -1.9060 12 1 2.9095 8.5534 -1.7415 13 6 1.2588 9.8690 -2.1111 14 7 2.0014 10.9559 -2.1066 15 14 -0.5830 9.9974 -2.3950 16 1 -0.8678 9.8994 -3.8490 17 1 -1.2720 8.8930 -1.6801 18 1 -1.0733 11.3015 -1.8812 19 6 3.6952 3.5888 -1.1498 20 6 4.0736 2.8882 0.1590 21 6 3.5652 1.4451 0.1258 22 1 3.8544 0.9371 1.0458 23 7 4.1508 0.7476 -1.0218 24 6 5.3685 0.1798 -0.9157 25 8 5.9793 0.2459 0.1299 26 6 5.9709 -0.5371 -2.0963 27 6 6.1191 -2.0569 -1.9996 28 6 7.3561 -1.1607 -1.9125 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5523 2.2174 -1.3492 35 1 1.9922 1.5359 -2.1491 36 1 2.8644 5.9546 -2.4029 37 1 2.6072 6.1233 -0.6497 38 1 1.5921 11.8235 -2.2503 39 1 4.2208 3.1191 -1.9811 40 1 3.9670 4.6429 -1.0918 41 1 5.1578 2.8895 0.2720 42 1 3.6197 3.4152 0.9982 43 1 3.6620 0.6944 -1.8579 44 1 5.7346 -0.1154 -3.0733 45 1 5.7804 -2.5382 -1.0821 46 1 5.9799 -2.6353 -2.9129 47 1 8.0307 -1.1494 -2.7686 48 1 7.8314 -1.0523 -0.9378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298961526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -79.082996 kcal Electronic energy + Delta-G solvation = -27881.833939 eV Core-core repulsion = 24062.362161 eV Total energy + Delta-G solvation = -3819.471778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88586 -40.68433 -39.07297 -36.95965 -35.87275 -34.93453 -34.67815 -32.25291 -31.57656 -29.74541 -27.88228 -26.58986 -25.34563 -25.09200 -23.28261 -22.45731 -21.36852 -21.22813 -20.16490 -19.50221 -18.63880 -18.16817 -17.24421 -17.12528 -16.97692 -16.60342 -16.21894 -15.94803 -15.83037 -15.45523 -15.04904 -14.97451 -14.80976 -14.70835 -14.59494 -14.40393 -13.79526 -13.70533 -13.50452 -13.36950 -13.09180 -13.03344 -12.85180 -12.67261 -12.58915 -12.41862 -12.28978 -11.88689 -11.74521 -11.71575 -11.51773 -11.49927 -11.36626 -11.17718 -10.93636 -10.86205 -10.53608 -10.11757 -9.71154 -9.00797 -8.52190 -6.23220 0.96620 1.30887 1.44875 1.49750 1.51719 1.53553 2.01271 2.15008 2.24347 2.66747 2.86068 2.95945 3.38173 3.57916 3.68202 3.77610 3.78218 3.90837 3.95820 4.01910 4.11134 4.16593 4.22396 4.26952 4.35848 4.36358 4.40670 4.56524 4.59040 4.74697 4.77462 4.80990 4.87602 4.93665 4.95921 4.98718 5.05775 5.07459 5.17508 5.25087 5.26851 5.39930 5.50548 5.53300 5.69998 6.10643 6.18597 6.54468 6.92871 7.05628 7.25990 8.60242 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002575 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.667693 B =10871.863356 C =11965.110801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C -0.100 4.100 4 H 0.081 0.919 5 C 0.114 3.886 6 N -0.602 5.602 7 C 0.537 3.463 8 O -0.558 6.558 9 C -0.108 4.108 10 S -0.173 6.173 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.045 3.955 14 N -0.917 5.917 15 Si 0.915 3.085 16 H -0.261 1.261 17 H -0.236 1.236 18 H -0.260 1.260 19 C 0.106 3.894 20 C -0.142 4.142 21 C 0.159 3.841 22 H 0.083 0.917 23 N -0.706 5.706 24 C 0.542 3.458 25 O -0.583 6.583 26 C -0.200 4.200 27 C -0.140 4.140 28 C -0.157 4.157 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.277 0.723 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.411 0.589 44 H 0.148 0.852 45 H 0.089 0.911 46 H 0.128 0.872 47 H 0.121 0.879 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -30.002 0.285 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.119 4.119 4 H 0.099 0.901 5 C -0.008 4.008 6 N -0.336 5.336 7 C 0.325 3.675 8 O -0.436 6.436 9 C -0.259 4.259 10 S 0.054 5.946 11 C -0.676 4.676 12 H 0.079 0.921 13 C -0.161 4.161 14 N -0.555 5.555 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.160 1.160 18 H -0.184 1.184 19 C -0.016 4.016 20 C -0.181 4.181 21 C 0.054 3.946 22 H 0.101 0.899 23 N -0.358 5.358 24 C 0.330 3.670 25 O -0.463 6.463 26 C -0.221 4.221 27 C -0.177 4.177 28 C -0.195 4.195 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.249 0.751 44 H 0.165 0.835 45 H 0.108 0.892 46 H 0.146 0.854 47 H 0.139 0.861 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.765 -29.925 0.769 30.312 hybrid contribution 0.779 1.191 -0.048 1.424 sum 5.544 -28.734 0.722 29.273 Atomic orbital electron populations 1.21834 0.95530 1.02226 1.01789 1.21439 0.95919 0.93709 1.03256 1.21698 0.93770 0.97999 0.98469 0.90097 1.21717 0.99895 0.81309 0.97863 1.48023 1.08564 1.05945 1.71036 1.19931 0.86355 0.85669 0.75580 1.90677 1.16105 1.86431 1.50415 1.23293 1.02079 0.93926 1.06611 1.84677 1.14966 1.00075 1.94929 1.22445 0.96148 0.92567 1.56403 0.92069 1.25577 1.02996 0.94294 0.93185 1.70022 1.38006 0.98933 1.48548 0.85859 0.80149 0.79973 0.80343 1.18603 1.16027 1.18403 1.21881 0.78770 1.02524 0.98417 1.22260 1.02134 0.95855 0.97895 1.20807 0.91924 0.91693 0.90139 0.89922 1.45937 1.18360 1.55414 1.16062 1.20120 0.80822 0.77506 0.88551 1.90692 1.62136 1.61573 1.31931 1.22299 1.03292 0.97878 0.98648 1.23012 1.00672 0.89378 1.04674 1.22985 0.90227 1.02189 1.04086 0.91555 0.93347 0.92835 0.90304 0.91277 0.89826 0.89300 0.87181 0.87396 0.91367 0.89297 0.89525 0.90249 0.90579 0.75129 0.83460 0.89225 0.85357 0.86075 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.67 71.98 0.70 -1.32 16 2 C -0.11 -1.20 5.19 30.60 0.16 -1.04 16 3 C -0.10 -1.46 2.12 -10.86 -0.02 -1.49 16 4 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 5 C 0.11 2.05 5.01 86.22 0.43 2.48 16 6 N -0.60 -13.97 2.98 -819.73 -2.44 -16.42 16 7 C 0.54 18.14 7.72 87.66 0.68 18.81 16 8 O -0.56 -23.03 15.28 -3.04 -0.05 -23.08 16 9 C -0.11 -4.07 4.50 71.24 0.32 -3.75 16 10 S -0.17 -8.69 18.55 -56.49 -1.05 -9.74 16 11 C -0.53 -30.64 10.04 67.95 0.68 -29.96 16 12 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 13 C 0.04 2.63 5.50 84.86 0.47 3.09 16 14 N -0.92 -55.82 13.97 21.65 0.30 -55.52 16 15 Si 0.91 44.84 27.74 68.60 1.90 46.74 16 16 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.11 1.98 6.09 86.37 0.53 2.51 16 20 C -0.14 -2.50 5.77 30.67 0.18 -2.32 16 21 C 0.16 2.43 2.21 45.01 0.10 2.53 16 22 H 0.08 1.51 7.58 -2.39 -0.02 1.49 16 23 N -0.71 -8.69 3.68 -442.42 -1.63 -10.32 16 24 C 0.54 8.91 7.58 87.65 0.66 9.57 16 25 O -0.58 -14.74 15.92 -3.03 -0.05 -14.79 16 26 C -0.20 -2.12 6.19 -11.54 -0.07 -2.19 16 27 C -0.14 -1.18 10.23 30.60 0.31 -0.87 16 28 C -0.16 -1.77 10.04 30.60 0.31 -1.46 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.77 6.70 -2.39 -0.02 0.75 16 32 H 0.08 0.69 7.70 -2.39 -0.02 0.67 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.90 5.72 -2.39 -0.01 1.89 16 35 H 0.09 1.12 6.64 -2.38 -0.02 1.11 16 36 H 0.11 3.83 7.94 -2.40 -0.02 3.81 16 37 H 0.11 3.82 7.69 -2.39 -0.02 3.80 16 38 H 0.28 15.58 8.31 -92.70 -0.77 14.80 16 39 H 0.09 1.34 7.74 -2.39 -0.02 1.32 16 40 H 0.09 1.76 5.93 -2.38 -0.01 1.75 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.41 3.33 6.76 -92.71 -0.63 2.70 16 44 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 1.37 7.67 -2.39 -0.02 1.35 16 Total: -1.00 -76.40 392.76 2.72 -73.68 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.30 Total: 14.82 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.43 Total: -5.38 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -3.77 Total: -82.26 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.05 Total: -9.74 kcal Total: -76.40 2.72 -73.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298961526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.404 kcal (2) G-P(sol) polarization free energy of solvation -76.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds