Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99483 * 2 1 4 4 H 1.09005 * 109.47480 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.47299 * 119.99782 * 3 2 1 6 6 C 1.53006 * 109.46934 * 185.55447 * 5 3 2 7 7 C 1.52998 * 109.47036 * 239.99668 * 3 2 1 8 8 C 1.50700 * 109.47064 * 66.43760 * 7 3 2 9 9 O 1.21284 * 120.00364 * 355.82593 * 8 7 3 10 10 N 1.34783 * 120.00017 * 175.82841 * 8 7 3 11 11 C 1.46498 * 119.99809 * 359.97438 * 10 8 7 12 12 C 1.46503 * 120.00028 * 180.02562 * 10 8 7 13 13 C 1.53495 * 114.20336 * 239.99859 * 12 10 8 14 14 N 1.47065 * 87.98626 * 220.14561 * 13 12 10 15 15 C 1.34771 * 136.06062 * 207.08323 * 14 13 12 16 16 O 1.21287 * 120.00181 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00391 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47387 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99912 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99697 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99834 * 179.72596 * 19 18 17 22 22 N 1.31627 * 119.99803 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00104 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47027 * 90.00068 * 23 21 19 25 25 H 1.48491 * 109.47393 * 210.00078 * 23 21 19 26 26 H 1.48504 * 109.47084 * 330.00666 * 23 21 19 27 27 C 1.47069 * 87.88432 * 27.34234 * 14 13 12 28 28 H 1.07991 * 120.00660 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99316 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00356 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46739 * 305.55121 * 5 3 2 32 32 H 1.08993 * 109.47061 * 65.55168 * 5 3 2 33 33 H 1.08998 * 109.46866 * 174.59010 * 6 5 3 34 34 H 1.09004 * 109.46680 * 294.58729 * 6 5 3 35 35 H 1.08998 * 109.47002 * 54.58756 * 6 5 3 36 36 H 1.08997 * 109.47556 * 306.43681 * 7 3 2 37 37 H 1.09000 * 109.47630 * 186.43602 * 7 3 2 38 38 H 1.08993 * 109.47410 * 270.00090 * 11 10 8 39 39 H 1.09000 * 109.47318 * 30.01018 * 11 10 8 40 40 H 1.09008 * 109.46982 * 149.99763 * 11 10 8 41 41 H 1.08999 * 113.27827 * 13.05935 * 12 10 8 42 42 H 1.09000 * 113.46716 * 105.36771 * 13 12 10 43 43 H 1.08998 * 113.52487 * 334.93728 * 13 12 10 44 44 H 1.08999 * 109.46722 * 60.00134 * 17 15 14 45 45 H 1.09005 * 109.46889 * 300.00380 * 17 15 14 46 46 H 0.97002 * 119.99935 * 180.02562 * 22 21 19 47 47 H 1.09001 * 113.46849 * 87.43688 * 27 14 13 48 48 H 1.09002 * 113.46796 * 217.87870 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 6 2.9430 1.3864 1.2493 6 6 3.6009 2.7659 1.3210 7 6 2.9430 1.3862 -1.2492 8 6 2.0693 1.4656 -2.4745 9 8 0.8642 1.3819 -2.3665 10 7 2.6272 1.6296 -3.6905 11 6 4.0828 1.7312 -3.8209 12 6 1.7778 1.7073 -4.8816 13 6 2.0533 0.6142 -5.9234 14 7 1.8782 1.6364 -6.9661 15 6 1.4926 1.6493 -8.2574 16 8 1.1870 0.6134 -8.8095 17 6 1.4410 2.9507 -9.0155 18 16 0.8896 2.6398 -10.7112 19 6 0.9211 4.2820 -11.3491 20 1 1.2226 5.1021 -10.7144 21 6 0.5633 4.5208 -12.6688 22 7 0.5863 5.7477 -13.1451 23 14 0.0490 3.1012 -13.7687 24 1 -1.4192 2.9028 -13.6669 25 1 0.4105 3.4091 -15.1757 26 1 0.7468 1.8632 -13.3378 27 6 2.3153 2.6375 -5.9815 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 2.3293 1.2300 2.1365 32 1 3.7144 0.6179 1.2010 33 1 4.1500 2.8582 2.2580 34 1 4.2886 2.8843 0.4836 35 1 2.8328 3.5377 1.2723 36 1 3.5725 0.4984 -1.3087 37 1 3.5723 2.2745 -1.1936 38 1 4.3824 2.7763 -3.7438 39 1 4.5597 1.1569 -3.0266 40 1 4.3893 1.3357 -4.7893 41 1 0.7221 1.8475 -4.6495 42 1 1.2913 -0.1649 -5.9470 43 1 3.0653 0.2123 -5.8751 44 1 2.4336 3.4007 -9.0326 45 1 0.7428 3.6293 -8.5254 46 1 0.3359 5.9146 -14.0673 47 1 3.3967 2.7699 -5.9478 48 1 1.7766 3.5823 -6.0546 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299398593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = -14.304717 kcal Electronic energy + Delta-G solvation = -26721.230211 eV Core-core repulsion = 22904.567429 eV Total energy + Delta-G solvation = -3816.662781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09904 -39.73895 -37.91001 -36.88078 -35.16028 -32.56079 -32.45758 -30.92452 -29.95882 -28.10766 -27.26578 -26.12812 -25.69975 -25.52270 -22.44741 -21.31701 -20.10568 -19.43927 -19.16592 -17.83667 -17.55860 -17.06121 -16.60055 -16.27781 -15.54279 -15.45331 -15.01681 -14.87634 -14.71946 -14.31074 -14.10090 -13.88191 -13.68297 -13.51760 -13.13292 -13.04791 -12.94744 -12.82664 -12.78374 -12.67151 -12.50506 -12.18600 -12.02705 -11.90485 -11.49178 -11.30293 -11.25605 -11.08971 -11.01984 -10.84521 -10.64285 -10.18644 -9.87766 -9.61576 -9.38722 -9.03233 -9.01788 -8.75838 -8.53006 -6.94839 -6.30539 -4.02866 2.16286 2.27583 2.31739 2.68021 2.90296 3.16653 3.32496 3.49455 3.55734 4.00034 4.12836 4.30753 4.33998 4.36929 4.37730 4.59473 4.65658 4.70549 4.82988 4.85207 4.92580 4.99746 5.00944 5.03075 5.08476 5.08576 5.14081 5.17885 5.20560 5.30215 5.41640 5.48666 5.48825 5.60060 5.64024 5.74357 5.74504 5.76329 5.78277 5.92521 5.97806 6.11944 6.47886 6.66709 6.95705 7.67573 7.84278 7.92438 8.34467 8.39789 9.15451 10.78584 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026977 B = 0.001851 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.657346 B =15120.582937 C =15442.548751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.160 4.160 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.156 4.156 7 C -0.133 4.133 8 C 0.515 3.485 9 O -0.524 6.524 10 N -0.608 5.608 11 C 0.070 3.930 12 C 0.111 3.889 13 C 0.092 3.908 14 N -0.648 5.648 15 C 0.565 3.435 16 O -0.513 6.513 17 C -0.115 4.115 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.090 3.910 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.089 0.911 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -7.982 31.070 33.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.214 4.214 7 C -0.173 4.173 8 C 0.303 3.697 9 O -0.399 6.399 10 N -0.342 5.342 11 C -0.073 4.073 12 C 0.006 3.994 13 C -0.033 4.033 14 N -0.387 5.387 15 C 0.354 3.646 16 O -0.386 6.386 17 C -0.266 4.266 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.035 4.035 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.154 0.846 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.769 -9.434 29.893 32.550 hybrid contribution 0.362 0.866 -0.207 0.961 sum 9.130 -8.568 29.686 32.219 Atomic orbital electron populations 1.23734 0.95949 1.01466 0.98505 1.22642 0.96009 0.97089 1.02020 1.20168 0.96427 0.97027 0.92674 0.90069 1.21545 0.98814 0.97635 0.97395 1.21857 1.00745 0.97058 1.01693 1.21815 0.98742 1.04369 0.92390 1.20791 0.89146 0.75609 0.84142 1.90736 1.14932 1.48367 1.85854 1.47766 1.07115 1.73155 1.06204 1.21890 0.79481 1.02302 1.03595 1.22960 0.97321 0.96402 0.82675 1.23346 1.02155 0.94045 0.83712 1.49288 1.68155 1.11552 1.09693 1.19880 0.75478 0.91097 0.78104 1.90726 1.47511 1.34507 1.65870 1.23216 1.05696 0.96778 1.00873 1.84809 1.88263 1.15012 1.03383 1.22296 1.53036 0.91059 1.00509 0.89350 1.24708 0.93710 0.95882 0.96973 1.69935 1.46200 1.19298 1.16150 0.86737 0.80655 0.83976 0.80509 1.19156 1.19885 1.15934 1.23454 1.00720 0.94738 0.84555 0.88583 0.89112 0.88059 0.91518 0.91785 0.92632 0.92558 0.92550 0.88696 0.88529 0.91907 0.90564 0.90548 0.84650 0.89933 0.89923 0.88493 0.88446 0.91910 0.89331 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 13.20 29.01 0.38 -1.01 16 2 C -0.16 -1.22 7.79 -36.03 -0.28 -1.50 16 3 C -0.04 -0.28 1.80 -91.77 -0.17 -0.44 16 4 H 0.08 0.64 7.61 -51.93 -0.40 0.25 16 5 C -0.12 -0.53 5.38 -26.73 -0.14 -0.68 16 6 C -0.16 -0.62 9.55 37.16 0.36 -0.27 16 7 C -0.13 -0.70 3.54 -27.88 -0.10 -0.80 16 8 C 0.51 4.40 7.47 -10.98 -0.08 4.32 16 9 O -0.52 -6.43 13.64 5.55 0.08 -6.35 16 10 N -0.61 -4.44 3.12 -173.56 -0.54 -4.98 16 11 C 0.07 0.28 8.85 59.85 0.53 0.81 16 12 C 0.11 1.05 4.57 -67.68 -0.31 0.74 16 13 C 0.09 1.01 8.17 -8.51 -0.07 0.94 16 14 N -0.65 -8.95 3.69 -185.07 -0.68 -9.63 16 15 C 0.56 10.60 8.10 -10.99 -0.09 10.51 16 16 O -0.51 -11.62 16.64 5.55 0.09 -11.53 16 17 C -0.12 -2.29 5.98 36.01 0.22 -2.08 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.52 13.97 55.49 0.78 -25.75 16 23 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 27 C 0.09 0.86 7.85 -8.37 -0.07 0.79 16 28 H 0.10 0.90 7.83 -52.49 -0.41 0.49 16 29 H 0.09 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.18 6.71 -51.93 -0.35 -0.17 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.36 7.61 -51.93 -0.40 -0.03 16 37 H 0.10 0.34 6.28 -51.93 -0.33 0.02 16 38 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.16 6.56 -51.93 -0.34 -0.18 16 40 H 0.08 0.30 6.18 -51.92 -0.32 -0.02 16 41 H 0.14 1.52 7.29 -51.93 -0.38 1.14 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.75 6.97 -51.93 -0.36 0.39 16 44 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 45 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.09 0.65 6.57 -51.93 -0.34 0.31 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -36.15 401.41 -8.39 -44.54 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.85 Total: -3.16 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.39 Total: -0.71 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.45 Total: -40.36 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.17 Total: -17.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.15 -8.39 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299398593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.233 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds