Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46934 * 130.36287 * 3 2 1 5 5 C 1.46496 * 119.99461 * 263.72855 * 4 3 2 6 6 C 1.53000 * 109.47297 * 274.85314 * 5 4 3 7 7 C 1.53007 * 117.49744 * 243.62594 * 6 5 4 8 8 C 1.53001 * 117.49954 * 175.00382 * 6 5 4 9 9 C 1.34768 * 120.00018 * 83.73322 * 4 3 2 10 10 O 1.21364 * 120.00025 * 174.63318 * 9 4 3 11 11 C 1.49352 * 120.00203 * 354.62695 * 9 4 3 12 12 O 1.21371 * 119.99997 * 0.34526 * 11 9 4 13 13 N 1.34780 * 120.00268 * 180.34407 * 11 9 4 14 14 C 1.39716 * 120.00371 * 184.54974 * 13 11 9 15 15 C 1.38935 * 120.07323 * 324.48230 * 14 13 11 16 16 C 1.38090 * 119.92044 * 179.76544 * 15 14 13 17 17 C 1.38297 * 120.08075 * 0.51785 * 16 15 14 18 18 C 1.50703 * 119.92526 * 179.72148 * 17 16 15 19 19 C 1.50697 * 109.46555 * 270.01494 * 18 17 16 20 20 H 1.07992 * 120.00355 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99514 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99816 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99699 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46836 * 119.99998 * 23 21 19 26 26 H 1.48500 * 109.46763 * 239.99696 * 23 21 19 27 27 C 1.38295 * 120.14859 * 359.73286 * 17 16 15 28 28 C 1.38091 * 120.07389 * 0.02562 * 27 17 16 29 29 H 4.40635 * 5.51400 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47501 * 10.36144 * 3 2 1 31 31 H 1.08999 * 109.47196 * 250.36064 * 3 2 1 32 32 H 1.08997 * 109.47885 * 34.85357 * 5 4 3 33 33 H 1.09003 * 109.46901 * 154.85391 * 5 4 3 34 34 H 1.09000 * 115.55253 * 29.32934 * 6 5 4 35 35 H 1.08989 * 117.50136 * 359.97438 * 7 6 5 36 36 H 1.09007 * 117.49669 * 145.02076 * 7 6 5 37 37 H 1.09000 * 117.49677 * 214.97650 * 8 6 5 38 38 H 1.08997 * 117.50063 * 0.02562 * 8 6 5 39 39 H 0.97008 * 119.99517 * 4.81681 * 13 11 9 40 40 H 1.07999 * 120.03578 * 0.02802 * 15 14 13 41 41 H 1.08005 * 119.96203 * 180.23283 * 16 15 14 42 42 H 1.08994 * 109.46953 * 30.01660 * 18 17 16 43 43 H 1.09002 * 109.46413 * 150.01656 * 18 17 16 44 44 H 0.96999 * 119.99373 * 180.02562 * 22 21 19 45 45 H 1.07997 * 119.95983 * 180.02562 * 27 17 16 46 46 H 1.08008 * 120.03494 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8954 -1.0525 5 6 3.5089 0.3519 -2.3602 6 6 4.9577 -0.1377 -2.3126 7 6 5.9717 0.5676 -3.2156 8 6 5.5038 -0.8498 -3.5518 9 6 3.2378 2.2184 -0.8176 10 8 3.7325 2.9461 -1.6534 11 6 2.7440 2.7891 0.4712 12 8 2.2548 2.0605 1.3097 13 7 2.8415 4.1132 0.7033 14 6 2.4679 4.6343 1.9446 15 6 1.3965 4.0836 2.6369 16 6 1.0329 4.5981 3.8658 17 6 1.7270 5.6670 4.4026 18 6 1.3233 6.2297 5.7411 19 6 0.3006 7.3182 5.5404 20 1 -0.0247 7.5764 4.5436 21 6 -0.2197 7.9845 6.6297 22 7 0.1769 7.6703 7.8436 23 14 -1.4879 9.3333 6.3811 24 1 -1.7622 9.4936 4.9305 25 1 -2.7432 8.9683 7.0855 26 1 -0.9659 10.6107 6.9299 27 6 2.7907 6.2209 3.7138 28 6 3.1628 5.7082 2.4868 29 1 -1.0501 0.0000 0.0003 30 1 3.0098 -1.0100 -0.1848 31 1 3.0092 0.3462 0.9679 32 1 2.8519 -0.4813 -2.6094 33 1 3.4129 1.1296 -3.1179 34 1 5.3053 -0.4837 -1.3392 35 1 5.6067 1.3800 -3.8437 36 1 6.9868 0.6858 -2.8361 37 1 6.2110 -1.6640 -3.3936 38 1 4.8312 -0.9691 -4.4011 39 1 3.1676 4.7048 0.0071 40 1 0.8514 3.2515 2.2164 41 1 0.2026 4.1681 4.4063 42 1 0.8947 5.4369 6.3541 43 1 2.1997 6.6421 6.2410 44 1 -0.1894 8.1388 8.6099 45 1 3.3308 7.0553 4.1360 46 1 3.9933 6.1416 1.9491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337278454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = 52.357193 kcal Electronic energy + Delta-G solvation = -28072.773958 eV Core-core repulsion = 24123.557902 eV Total energy + Delta-G solvation = -3949.216055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28867 -39.58962 -38.14732 -37.73300 -36.38075 -34.83224 -33.03639 -32.86891 -30.60424 -30.36843 -28.77623 -27.56128 -26.67281 -24.37308 -22.81376 -22.70913 -22.43821 -21.19142 -20.50692 -20.06765 -18.88941 -17.85909 -17.57455 -16.83751 -16.32717 -16.27290 -16.05022 -15.35983 -15.12116 -14.94474 -14.52074 -14.34361 -14.24123 -14.07203 -13.66663 -13.59470 -13.11347 -12.99363 -12.85437 -12.62837 -12.17508 -12.04215 -11.90324 -11.71972 -11.40219 -11.30587 -10.93739 -10.85779 -10.64538 -10.59703 -10.46730 -10.42342 -10.28033 -10.04296 -9.68911 -9.42527 -9.37066 -9.24703 -8.44137 -8.34576 -7.49252 -6.05237 -4.09234 1.06833 1.81532 1.99093 2.07057 2.63393 2.74490 3.02888 3.28721 3.30998 3.36486 3.41518 3.49639 4.10783 4.20338 4.30971 4.35734 4.48332 4.52594 4.54182 4.83186 4.87320 5.03485 5.16758 5.25279 5.28907 5.35649 5.38521 5.51251 5.52449 5.69923 5.73324 5.79416 5.84874 5.91087 5.98784 6.03159 6.14088 6.53777 6.59402 6.70720 6.77184 7.11063 7.13466 7.19850 7.46498 7.49206 7.50602 7.63649 7.82842 7.88604 7.90700 8.30418 8.96369 9.54692 11.04423 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.002081 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.165441 B =13450.300703 C =14041.696775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.195 4.195 3 C 0.213 3.787 4 N -0.581 5.581 5 C 0.144 3.856 6 C -0.175 4.175 7 C -0.170 4.170 8 C -0.174 4.174 9 C 0.515 3.485 10 O -0.512 6.512 11 C 0.499 3.501 12 O -0.491 6.491 13 N -0.634 5.634 14 C 0.093 3.907 15 C -0.112 4.112 16 C -0.110 4.110 17 C -0.036 4.036 18 C 0.046 3.954 19 C -0.511 4.511 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.109 4.109 28 C -0.134 4.134 29 H 0.215 0.785 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.416 0.584 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.261 0.739 45 H 0.124 0.876 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -17.743 -21.516 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.092 3.908 4 N -0.314 5.314 5 C 0.022 3.978 6 C -0.194 4.194 7 C -0.207 4.207 8 C -0.212 4.212 9 C 0.297 3.703 10 O -0.387 6.387 11 C 0.281 3.719 12 O -0.366 6.366 13 N -0.280 5.280 14 C 0.002 3.998 15 C -0.132 4.132 16 C -0.129 4.129 17 C -0.036 4.036 18 C 0.010 3.990 19 C -0.549 4.549 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.128 4.128 28 C -0.154 4.154 29 H 0.232 0.768 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.253 0.747 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.142 0.858 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.688 -17.849 -21.225 29.061 hybrid contribution -0.781 1.037 -0.353 1.345 sum 7.908 -16.812 -21.577 28.474 Atomic orbital electron populations 1.24913 0.95923 0.99867 0.99641 1.23137 0.94511 1.00948 1.01020 1.18855 0.84561 0.94502 0.92866 1.47731 1.62964 1.06079 1.14607 1.21214 0.93401 0.99254 0.83970 1.22710 0.94976 1.05369 0.96354 1.23032 0.99316 0.95482 1.02910 1.22961 1.03699 0.96040 0.98487 1.20160 0.79589 0.82870 0.87640 1.90761 1.42511 1.58667 1.46722 1.20036 0.80874 0.83257 0.87755 1.90760 1.41569 1.58157 1.46121 1.43004 1.62995 1.07094 1.14888 1.17509 0.97430 0.98272 0.86632 1.21112 0.95476 1.00694 0.95887 1.21015 0.99997 0.96823 0.95037 1.20782 0.92112 0.92233 0.98519 1.18378 0.97049 0.96025 0.87586 1.21095 1.22876 1.17902 0.93034 0.92377 1.25020 0.96868 0.97331 0.95169 1.69968 1.43525 1.41812 0.97942 0.86483 0.81241 0.81677 0.78341 1.19666 1.20947 1.20952 1.20905 0.97978 0.99979 0.93923 1.20796 0.99909 0.97897 0.96825 0.76765 0.88275 0.85381 0.89494 0.89056 0.87353 0.88354 0.88826 0.88577 0.88605 0.74674 0.85351 0.85938 0.95203 0.95216 0.92889 0.85786 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.20 -2.10 12.04 -37.12 -0.45 -2.55 16 3 C 0.21 1.90 5.55 -6.83 -0.04 1.87 16 4 N -0.58 -5.52 2.45 -177.57 -0.44 -5.96 16 5 C 0.14 1.07 5.68 -4.04 -0.02 1.04 16 6 C -0.17 -1.17 6.01 -90.62 -0.54 -1.72 16 7 C -0.17 -1.18 10.18 -26.73 -0.27 -1.45 16 8 C -0.17 -0.94 10.25 -26.73 -0.27 -1.21 16 9 C 0.51 6.15 7.66 -11.64 -0.09 6.06 16 10 O -0.51 -6.78 16.04 5.48 0.09 -6.69 16 11 C 0.50 6.72 7.56 -11.63 -0.09 6.63 16 12 O -0.49 -7.29 9.58 5.48 0.05 -7.23 16 13 N -0.63 -8.59 5.32 -10.30 -0.05 -8.65 16 14 C 0.09 1.52 6.29 -83.75 -0.53 0.99 16 15 C -0.11 -2.00 8.69 -39.38 -0.34 -2.34 16 16 C -0.11 -2.18 9.69 -39.61 -0.38 -2.57 16 17 C -0.04 -0.77 5.07 -104.58 -0.53 -1.30 16 18 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 19 C -0.51 -14.17 9.09 -34.44 -0.31 -14.49 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 23 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.11 -2.07 9.69 -39.61 -0.38 -2.45 16 28 C -0.13 -2.17 9.97 -39.38 -0.39 -2.57 16 29 H 0.22 1.59 7.80 -54.09 -0.42 1.17 16 30 H 0.10 0.59 8.02 -51.93 -0.42 0.17 16 31 H 0.13 1.30 5.83 -51.93 -0.30 1.00 16 32 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.09 0.76 7.09 -51.93 -0.37 0.40 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.73 8.03 -51.94 -0.42 0.31 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.42 4.82 8.30 -40.82 -0.34 4.48 16 40 H 0.13 2.24 6.26 -52.49 -0.33 1.91 16 41 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 42 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 46 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -31.99 399.17 -9.30 -41.29 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.36 Total: 5.13 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -4.32 Total: -14.83 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.25 Total: -40.11 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.14 Total: -13.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.99 -9.30 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337278454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.650 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds