Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46934 * 130.36287 * 3 2 1 5 5 C 1.46496 * 119.99461 * 263.72855 * 4 3 2 6 6 C 1.53000 * 109.47297 * 274.85314 * 5 4 3 7 7 C 1.53007 * 117.49744 * 243.62594 * 6 5 4 8 8 C 1.53001 * 117.49954 * 175.00382 * 6 5 4 9 9 C 1.34768 * 120.00018 * 83.73322 * 4 3 2 10 10 O 1.21364 * 120.00025 * 174.63318 * 9 4 3 11 11 C 1.49352 * 120.00203 * 354.62695 * 9 4 3 12 12 O 1.21371 * 119.99997 * 0.34526 * 11 9 4 13 13 N 1.34780 * 120.00268 * 180.34407 * 11 9 4 14 14 C 1.39716 * 120.00371 * 184.54974 * 13 11 9 15 15 C 1.38935 * 120.07323 * 324.48230 * 14 13 11 16 16 C 1.38090 * 119.92044 * 179.76544 * 15 14 13 17 17 C 1.38297 * 120.08075 * 0.51785 * 16 15 14 18 18 C 1.50703 * 119.92526 * 179.72148 * 17 16 15 19 19 C 1.50697 * 109.46555 * 270.01494 * 18 17 16 20 20 H 1.07992 * 120.00355 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99514 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99816 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99699 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46836 * 119.99998 * 23 21 19 26 26 H 1.48500 * 109.46763 * 239.99696 * 23 21 19 27 27 C 1.38295 * 120.14859 * 359.73286 * 17 16 15 28 28 C 1.38091 * 120.07389 * 0.02562 * 27 17 16 29 29 H 4.40635 * 5.51400 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47501 * 10.36144 * 3 2 1 31 31 H 1.08999 * 109.47196 * 250.36064 * 3 2 1 32 32 H 1.08997 * 109.47885 * 34.85357 * 5 4 3 33 33 H 1.09003 * 109.46901 * 154.85391 * 5 4 3 34 34 H 1.09000 * 115.55253 * 29.32934 * 6 5 4 35 35 H 1.08989 * 117.50136 * 359.97438 * 7 6 5 36 36 H 1.09007 * 117.49669 * 145.02076 * 7 6 5 37 37 H 1.09000 * 117.49677 * 214.97650 * 8 6 5 38 38 H 1.08997 * 117.50063 * 0.02562 * 8 6 5 39 39 H 0.97008 * 119.99517 * 4.81681 * 13 11 9 40 40 H 1.07999 * 120.03578 * 0.02802 * 15 14 13 41 41 H 1.08005 * 119.96203 * 180.23283 * 16 15 14 42 42 H 1.08994 * 109.46953 * 30.01660 * 18 17 16 43 43 H 1.09002 * 109.46413 * 150.01656 * 18 17 16 44 44 H 0.96999 * 119.99373 * 180.02562 * 22 21 19 45 45 H 1.07997 * 119.95983 * 180.02562 * 27 17 16 46 46 H 1.08008 * 120.03494 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8954 -1.0525 5 6 3.5089 0.3519 -2.3602 6 6 4.9577 -0.1377 -2.3126 7 6 5.9717 0.5676 -3.2156 8 6 5.5038 -0.8498 -3.5518 9 6 3.2378 2.2184 -0.8176 10 8 3.7325 2.9461 -1.6534 11 6 2.7440 2.7891 0.4712 12 8 2.2548 2.0605 1.3097 13 7 2.8415 4.1132 0.7033 14 6 2.4679 4.6343 1.9446 15 6 1.3965 4.0836 2.6369 16 6 1.0329 4.5981 3.8658 17 6 1.7270 5.6670 4.4026 18 6 1.3233 6.2297 5.7411 19 6 0.3006 7.3182 5.5404 20 1 -0.0247 7.5764 4.5436 21 6 -0.2197 7.9845 6.6297 22 7 0.1769 7.6703 7.8436 23 14 -1.4879 9.3333 6.3811 24 1 -1.7622 9.4936 4.9305 25 1 -2.7432 8.9683 7.0855 26 1 -0.9659 10.6107 6.9299 27 6 2.7907 6.2209 3.7138 28 6 3.1628 5.7082 2.4868 29 1 -1.0501 0.0000 0.0003 30 1 3.0098 -1.0100 -0.1848 31 1 3.0092 0.3462 0.9679 32 1 2.8519 -0.4813 -2.6094 33 1 3.4129 1.1296 -3.1179 34 1 5.3053 -0.4837 -1.3392 35 1 5.6067 1.3800 -3.8437 36 1 6.9868 0.6858 -2.8361 37 1 6.2110 -1.6640 -3.3936 38 1 4.8312 -0.9691 -4.4011 39 1 3.1676 4.7048 0.0071 40 1 0.8514 3.2515 2.2164 41 1 0.2026 4.1681 4.4063 42 1 0.8947 5.4369 6.3541 43 1 2.1997 6.6421 6.2410 44 1 -0.1894 8.1388 8.6099 45 1 3.3308 7.0553 4.1360 46 1 3.9933 6.1416 1.9491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337278454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = 35.673361 kcal Electronic energy + Delta-G solvation = -28073.497423 eV Core-core repulsion = 24123.557902 eV Total energy + Delta-G solvation = -3949.939520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.31300 -40.70536 -39.37314 -38.45828 -37.21951 -36.10729 -34.96650 -33.63564 -32.30666 -31.82404 -29.54030 -28.78593 -27.94955 -25.77180 -24.30052 -23.84444 -23.18936 -22.15202 -21.58562 -21.16300 -19.81926 -18.75698 -18.54860 -18.50222 -17.86247 -17.23698 -16.94839 -16.74518 -16.13841 -16.08962 -15.92882 -15.38345 -15.27603 -14.85566 -14.68933 -14.62734 -14.49737 -14.42525 -14.22757 -13.71124 -13.56678 -13.29985 -13.18070 -12.82514 -12.64883 -12.61150 -12.43245 -12.34332 -12.06060 -11.64771 -11.54660 -11.48199 -11.34949 -11.17074 -11.08395 -10.91179 -10.60618 -10.43848 -10.15623 -9.79418 -8.98561 -8.18840 -6.32567 -0.02182 0.54006 0.60540 1.03410 1.39795 1.40527 1.53849 1.71839 1.92170 2.02972 2.40079 2.52500 2.89500 2.95223 3.11246 3.16277 3.54068 3.74749 3.97605 4.02152 4.05375 4.11098 4.23717 4.31416 4.35735 4.46210 4.49486 4.56217 4.62533 4.65679 4.75732 4.83532 5.05114 5.06535 5.09750 5.13251 5.25404 5.28409 5.29197 5.32639 5.38636 5.40031 5.55646 5.75256 5.77694 6.02701 6.06924 6.12069 6.22357 6.53526 6.72301 6.79866 6.80406 7.35869 8.89778 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.002081 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.165441 B =13450.300703 C =14041.696775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.217 4.217 3 C 0.212 3.788 4 N -0.571 5.571 5 C 0.143 3.857 6 C -0.179 4.179 7 C -0.186 4.186 8 C -0.156 4.156 9 C 0.517 3.483 10 O -0.528 6.528 11 C 0.499 3.501 12 O -0.505 6.505 13 N -0.629 5.629 14 C 0.110 3.890 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.067 4.067 18 C 0.056 3.944 19 C -0.526 4.526 20 H 0.055 0.945 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.965 3.035 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.276 1.276 27 C -0.113 4.113 28 C -0.121 4.121 29 H 0.235 0.765 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.428 0.572 40 H 0.133 0.867 41 H 0.115 0.885 42 H 0.002 0.998 43 H 0.008 0.992 44 H 0.265 0.735 45 H 0.128 0.872 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 -18.494 -24.127 31.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.218 4.218 3 C 0.092 3.908 4 N -0.302 5.302 5 C 0.022 3.978 6 C -0.199 4.199 7 C -0.223 4.223 8 C -0.193 4.193 9 C 0.299 3.701 10 O -0.404 6.404 11 C 0.281 3.719 12 O -0.380 6.380 13 N -0.277 5.277 14 C 0.017 3.983 15 C -0.133 4.133 16 C -0.137 4.137 17 C -0.068 4.068 18 C 0.019 3.981 19 C -0.564 4.564 20 H 0.073 0.927 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.132 4.132 28 C -0.141 4.141 29 H 0.251 0.749 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.268 0.732 40 H 0.151 0.849 41 H 0.133 0.867 42 H 0.021 0.979 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.146 0.854 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.048 -18.631 -23.868 31.602 hybrid contribution -0.844 1.137 0.382 1.467 sum 8.204 -17.494 -23.486 30.413 Atomic orbital electron populations 1.25609 0.96899 0.99564 0.99214 1.23633 0.95368 1.01327 1.01456 1.18975 0.83817 0.95913 0.92137 1.47804 1.61692 1.05233 1.15463 1.21385 0.94453 0.99543 0.82436 1.22678 0.94264 1.05905 0.97003 1.23054 0.99383 0.96429 1.03482 1.23038 1.03272 0.95193 0.97819 1.19845 0.79808 0.83710 0.86736 1.90762 1.43565 1.59211 1.46874 1.20410 0.80267 0.82998 0.88234 1.90770 1.41938 1.58493 1.46764 1.42950 1.63001 1.07549 1.14162 1.17560 0.96142 0.97469 0.87178 1.21110 0.96133 1.00836 0.95227 1.20948 1.00016 0.96776 0.96007 1.20472 0.94619 0.94157 0.97552 1.18114 0.95584 0.94803 0.89613 1.21407 1.23444 1.18571 0.92970 0.92650 1.25926 0.98953 0.99785 0.94803 1.70086 1.44904 1.43158 0.98823 0.85395 0.78499 0.78601 0.78547 1.18934 1.20328 1.20121 1.20974 0.97220 1.00111 0.94892 1.21050 1.00264 0.97173 0.95605 0.74851 0.84906 0.86650 0.87322 0.89984 0.87189 0.89259 0.88937 0.87474 0.87574 0.73244 0.84923 0.86710 0.97929 0.97385 0.92596 0.85416 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.74 19.25 74.32 1.43 -2.31 16 2 C -0.22 -4.34 12.04 31.13 0.37 -3.96 16 3 C 0.21 3.38 5.55 84.57 0.47 3.85 16 4 N -0.57 -9.72 2.45 -834.08 -2.05 -11.77 16 5 C 0.14 1.80 5.68 86.38 0.49 2.29 16 6 C -0.18 -2.00 6.01 -10.79 -0.06 -2.07 16 7 C -0.19 -2.30 10.18 30.60 0.31 -1.98 16 8 C -0.16 -1.26 10.25 30.60 0.31 -0.95 16 9 C 0.52 11.51 7.66 87.24 0.67 12.18 16 10 O -0.53 -13.15 16.04 -3.29 -0.05 -13.20 16 11 C 0.50 12.64 7.56 87.24 0.66 13.30 16 12 O -0.50 -14.39 9.58 -3.31 -0.03 -14.42 16 13 N -0.63 -15.76 5.32 -304.84 -1.62 -17.38 16 14 C 0.11 3.38 6.29 38.22 0.24 3.62 16 15 C -0.11 -3.99 8.69 22.40 0.19 -3.79 16 16 C -0.12 -4.84 9.69 22.25 0.22 -4.62 16 17 C -0.07 -2.99 5.07 -19.84 -0.10 -3.09 16 18 C 0.06 2.99 5.10 29.10 0.15 3.14 16 19 C -0.53 -30.05 9.09 25.60 0.23 -29.81 16 20 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 21 C 0.00 0.19 5.46 84.66 0.46 0.66 16 22 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 23 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 27 C -0.11 -4.26 9.69 22.25 0.22 -4.04 16 28 C -0.12 -3.67 9.97 22.40 0.22 -3.45 16 29 H 0.23 3.11 7.80 -4.41 -0.03 3.07 16 30 H 0.13 1.19 8.02 -2.39 -0.02 1.17 16 31 H 0.12 2.20 5.83 -2.39 -0.01 2.18 16 32 H 0.11 0.92 8.11 -2.39 -0.02 0.90 16 33 H 0.08 1.23 7.09 -2.39 -0.02 1.21 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.25 8.03 -2.39 -0.02 1.23 16 36 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.43 8.83 8.30 -92.70 -0.77 8.07 16 40 H 0.13 4.55 6.26 -2.91 -0.02 4.53 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 43 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 44 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 46 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -70.31 399.17 5.27 -65.03 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.23 Total: 22.16 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 6.49 Total: -21.06 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -3.38 Total: -84.95 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.08 Total: -27.62 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.31 5.27 -65.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337278454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.708 kcal (2) G-P(sol) polarization free energy of solvation -70.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds