Wall clock time and date at job start Sat Apr 11 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47199 * 2 1 4 4 H 1.09001 * 109.99454 * 55.10249 * 3 2 1 5 5 C 1.54320 * 109.88365 * 294.00753 * 3 2 1 6 6 H 1.09000 * 110.72044 * 21.13959 * 5 3 2 7 7 N 1.46504 * 110.72286 * 144.23299 * 5 3 2 8 8 C 1.34773 * 120.00213 * 202.56015 * 7 5 3 9 9 O 1.21279 * 120.00231 * 359.97438 * 8 7 5 10 10 C 1.50708 * 119.99728 * 180.02562 * 8 7 5 11 11 S 1.81001 * 109.46801 * 179.97438 * 10 8 7 12 12 C 1.76201 * 99.99838 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99775 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00237 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00012 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46881 * 59.99919 * 16 14 12 18 18 H 1.48494 * 109.47117 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47173 * 300.00267 * 16 14 12 20 20 C 1.55158 * 103.10275 * 262.68696 * 5 3 2 21 21 C 1.54914 * 101.57899 * 324.58339 * 20 5 3 22 22 N 1.47316 * 109.84955 * 176.40055 * 3 2 1 23 23 C 1.34768 * 125.61890 * 300.42563 * 22 3 2 24 24 O 1.21288 * 120.00090 * 355.04508 * 23 22 3 25 25 C 1.50705 * 120.00268 * 175.05129 * 23 22 3 26 26 C 1.53780 * 113.61163 * 277.49150 * 25 23 22 27 27 C 1.53776 * 87.08314 * 220.01696 * 26 25 23 28 28 C 1.53777 * 113.61267 * 179.97438 * 25 23 22 29 29 H 1.09001 * 109.47050 * 305.68803 * 1 2 3 30 30 H 1.08998 * 109.47629 * 65.68378 * 1 2 3 31 31 H 1.08997 * 109.47313 * 185.68857 * 1 2 3 32 32 H 1.09002 * 109.46965 * 240.00343 * 2 1 3 33 33 H 1.08999 * 109.46782 * 120.00289 * 2 1 3 34 34 H 0.97008 * 119.99443 * 22.55899 * 7 5 3 35 35 H 1.08996 * 109.46951 * 299.99499 * 10 8 7 36 36 H 1.09002 * 109.47321 * 60.00081 * 10 8 7 37 37 H 0.96996 * 119.99982 * 180.02562 * 15 14 12 38 38 H 1.09002 * 111.00544 * 82.66242 * 20 5 3 39 39 H 1.09003 * 111.00446 * 206.47506 * 20 5 3 40 40 H 1.08996 * 110.36295 * 155.84557 * 21 20 5 41 41 H 1.08992 * 110.37047 * 278.06159 * 21 20 5 42 42 H 1.08998 * 112.85315 * 48.80045 * 25 23 22 43 43 H 1.08996 * 113.61826 * 334.57415 * 26 25 23 44 44 H 1.09004 * 113.61384 * 105.46720 * 26 25 23 45 45 H 1.08994 * 113.61622 * 270.88535 * 27 26 25 46 46 H 1.09006 * 113.61351 * 139.97827 * 27 26 25 47 47 H 1.08997 * 113.61796 * 254.52623 * 28 25 23 48 48 H 1.09005 * 113.61948 * 25.42759 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6118 1.9892 0.8401 5 6 1.6583 2.1341 -1.3257 6 1 0.8241 1.6197 -1.8028 7 7 1.3339 3.5448 -1.0997 8 6 0.5608 4.2082 -1.9821 9 8 0.1341 3.6376 -2.9635 10 6 0.2276 5.6595 -1.7498 11 16 -0.8176 6.2619 -3.0992 12 6 -1.0475 7.9318 -2.5859 13 1 -0.5915 8.2836 -1.6724 14 6 -1.8157 8.7947 -3.3552 15 7 -2.3729 8.3654 -4.4679 16 14 -2.0602 10.5648 -2.8108 17 1 -0.7414 11.2417 -2.7211 18 1 -2.9134 11.2731 -3.7984 19 1 -2.7194 10.5869 -1.4803 20 6 2.9476 1.9970 -2.1779 21 6 4.0501 2.1422 -1.0994 22 7 3.5106 1.4531 0.0870 23 6 4.2414 0.9238 1.0880 24 8 3.6887 0.4611 2.0634 25 6 5.7456 0.9070 0.9954 26 6 6.2988 -0.2674 0.1710 27 6 7.4109 -0.3822 1.2269 28 6 6.4307 0.2708 2.2163 29 1 -0.3633 0.5995 0.8347 30 1 -0.3634 0.4231 -0.9364 31 1 -0.3634 -1.0226 0.1019 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6756 4.0013 -0.3149 35 1 -0.3039 5.7634 -0.8039 36 1 1.1479 6.2426 -1.7155 37 1 -2.9094 8.9686 -5.0056 38 1 2.9967 1.0195 -2.6578 39 1 3.0148 2.7961 -2.9161 40 1 4.9707 1.6620 -1.4310 41 1 4.2299 3.1945 -0.8798 42 1 6.1633 1.8740 0.7153 43 1 5.6345 -1.1309 0.1408 44 1 6.6612 0.0237 -0.8149 45 1 8.2848 0.2317 1.0091 46 1 7.6675 -1.4107 1.4808 47 1 6.8996 0.9962 2.8812 48 1 5.8025 -0.4456 2.7457 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344732778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:31 Heat of formation + Delta-G solvation = -82.044480 kcal Electronic energy + Delta-G solvation = -27549.504906 eV Core-core repulsion = 23729.904709 eV Total energy + Delta-G solvation = -3819.600198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89033 -40.70668 -39.31929 -37.92596 -35.13822 -34.57696 -34.53101 -32.19139 -30.44701 -28.91650 -27.70207 -27.26651 -26.52297 -24.72385 -23.88756 -22.06133 -21.43888 -20.81856 -19.84482 -19.70683 -18.57504 -17.94016 -17.70385 -16.87260 -16.83331 -16.61814 -16.33798 -16.17901 -15.80353 -15.16152 -15.13537 -14.79770 -14.60988 -14.40990 -14.28889 -14.19558 -13.67930 -13.58291 -13.39306 -13.16332 -12.97313 -12.87637 -12.84962 -12.73693 -12.64744 -12.63371 -12.47110 -12.15057 -12.09165 -11.74451 -11.57159 -11.42976 -11.29095 -11.12493 -10.95355 -10.65912 -10.27228 -10.16330 -9.73366 -8.64992 -8.34079 -6.11469 1.26486 1.43757 1.46296 1.54960 1.57301 1.59656 1.86880 2.22059 2.28715 2.99962 3.21586 3.32178 3.47835 3.56989 3.66036 3.74608 3.87769 3.92666 3.94430 4.00972 4.13918 4.15682 4.24440 4.30559 4.34054 4.50055 4.52661 4.55871 4.67927 4.71670 4.80350 4.87352 4.87708 4.95824 5.00709 5.03242 5.06948 5.08572 5.11662 5.18510 5.19507 5.35613 5.42342 5.48222 5.53820 6.20116 6.41850 6.48846 7.07431 7.12175 7.20796 8.74604 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.002182 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.366854 B =12826.578639 C =13386.616458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.137 3.863 4 H 0.073 0.927 5 C 0.136 3.864 6 H 0.098 0.902 7 N -0.706 5.706 8 C 0.542 3.458 9 O -0.556 6.556 10 C -0.131 4.131 11 S -0.145 6.145 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.014 3.986 15 N -0.910 5.910 16 Si 0.996 3.004 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.139 4.139 21 C 0.102 3.898 22 N -0.612 5.612 23 C 0.535 3.465 24 O -0.580 6.580 25 C -0.134 4.134 26 C -0.117 4.117 27 C -0.132 4.132 28 C -0.127 4.127 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.906 -16.986 11.225 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.033 3.967 4 H 0.091 0.909 5 C 0.030 3.970 6 H 0.116 0.884 7 N -0.360 5.360 8 C 0.328 3.672 9 O -0.434 6.434 10 C -0.283 4.283 11 S 0.082 5.918 12 C -0.695 4.695 13 H 0.100 0.900 14 C -0.191 4.191 15 N -0.546 5.546 16 Si 0.818 3.182 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.178 4.178 21 C -0.020 4.020 22 N -0.345 5.345 23 C 0.326 3.674 24 O -0.460 6.460 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.169 4.169 28 C -0.165 4.165 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.249 0.751 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.151 0.849 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.862 -18.176 10.032 28.732 hybrid contribution -0.188 1.928 1.567 2.491 sum 19.674 -16.248 11.599 28.029 Atomic orbital electron populations 1.21773 0.94584 1.02589 1.01836 1.21689 0.96570 0.94950 1.02799 1.21799 0.81224 0.97069 0.96610 0.90940 1.21994 0.98854 0.81222 0.94904 0.88426 1.45750 1.52119 1.11441 1.26694 1.19952 0.77225 0.87743 0.82321 1.90701 1.53293 1.69435 1.29935 1.23382 1.04777 0.95608 1.04495 1.85524 1.64011 1.11469 1.30763 1.23169 1.37730 0.96304 1.12326 0.90036 1.26097 0.94209 1.04319 0.94471 1.70167 1.32031 1.37960 1.14474 0.85039 0.78755 0.76179 0.78251 1.18625 1.20431 1.18838 1.23190 0.93081 1.04243 0.97336 1.22516 0.97997 0.98019 0.83448 1.48755 1.06092 1.56947 1.22688 1.20832 0.90328 0.75860 0.80421 1.90675 1.74124 1.48595 1.32576 1.22927 0.88738 1.02439 1.01359 1.22804 0.97678 0.95960 0.99080 1.22831 0.96923 1.01934 0.95216 1.22830 0.97697 1.00091 0.95844 0.92946 0.92716 0.91307 0.90724 0.91782 0.75118 0.87614 0.87133 0.92005 0.88389 0.89887 0.87541 0.90104 0.84909 0.90960 0.88604 0.88038 0.90707 0.90470 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.65 71.98 0.69 -2.19 16 2 C -0.12 -2.35 5.44 30.59 0.17 -2.18 16 3 C 0.14 2.63 2.59 45.28 0.12 2.75 16 4 H 0.07 1.57 7.97 -2.39 -0.02 1.55 16 5 C 0.14 2.81 2.64 46.18 0.12 2.93 16 6 H 0.10 2.41 5.71 -2.39 -0.01 2.40 16 7 N -0.71 -16.49 5.12 -436.91 -2.24 -18.73 16 8 C 0.54 18.50 7.85 87.66 0.69 19.19 16 9 O -0.56 -23.86 15.55 -3.03 -0.05 -23.90 16 10 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 11 S -0.14 -7.82 20.57 -56.49 -1.16 -8.99 16 12 C -0.55 -30.76 9.50 67.95 0.65 -30.12 16 13 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 14 C 0.01 0.79 5.49 84.86 0.47 1.25 16 15 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 16 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 C -0.14 -2.25 6.77 31.99 0.22 -2.04 16 21 C 0.10 1.21 6.65 86.86 0.58 1.79 16 22 N -0.61 -10.15 3.09 -787.36 -2.43 -12.58 16 23 C 0.53 10.35 7.10 87.66 0.62 10.97 16 24 O -0.58 -16.06 14.93 -3.06 -0.05 -16.11 16 25 C -0.13 -1.62 3.09 -11.01 -0.03 -1.66 16 26 C -0.12 -1.07 7.42 31.12 0.23 -0.83 16 27 C -0.13 -1.07 8.08 31.13 0.25 -0.82 16 28 C -0.13 -1.64 7.41 31.13 0.23 -1.41 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.13 6.62 -2.39 -0.02 1.12 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.47 6.77 -2.39 -0.02 1.46 16 34 H 0.41 7.56 8.57 -92.70 -0.79 6.77 16 35 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 36 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 0.75 7.42 -2.39 -0.02 0.74 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.13 1.06 8.04 -2.39 -0.02 1.04 16 43 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 44 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.07 1.27 7.43 -2.38 -0.02 1.25 16 Total: -1.00 -77.35 399.61 1.99 -75.36 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.16 Total: 21.66 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 5.43 Total: -6.91 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -4.38 Total: -86.27 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.09 Total: -40.01 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.99 kcal Total: -77.35 1.99 -75.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344732778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.683 kcal (2) G-P(sol) polarization free energy of solvation -77.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds