Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46731 * 181.96065 * 3 2 1 5 5 C 1.36872 * 120.00465 * 275.28108 * 4 3 2 6 6 H 1.08003 * 120.00503 * 188.08335 * 5 4 3 7 7 C 1.39056 * 119.99469 * 8.08127 * 5 4 3 8 8 N 1.31354 * 120.00052 * 8.56751 * 7 5 4 9 9 Si 1.86802 * 119.99676 * 188.56673 * 7 5 4 10 10 H 1.48504 * 109.47078 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46775 * 119.99907 * 9 7 5 12 12 H 1.48494 * 109.47034 * 240.00094 * 9 7 5 13 13 C 1.34782 * 119.99730 * 95.28143 * 4 3 2 14 14 O 1.21594 * 119.99670 * 174.69339 * 13 4 3 15 15 C 1.47736 * 120.00138 * 354.68591 * 13 4 3 16 16 C 1.39769 * 120.08128 * 309.96001 * 15 13 4 17 17 C 1.38043 * 120.13950 * 180.02562 * 16 15 13 18 18 C 1.38112 * 120.30246 * 359.97438 * 17 16 15 19 19 C 1.39679 * 120.15656 * 359.76184 * 18 17 16 20 20 C 1.47865 * 120.06876 * 180.25833 * 19 18 17 21 21 O 1.21554 * 119.99905 * 222.25352 * 20 19 18 22 22 N 1.34772 * 120.00243 * 42.26403 * 20 19 18 23 23 C 1.46928 * 120.63030 * 5.28143 * 22 20 19 24 24 C 1.53622 * 108.54271 * 126.37357 * 23 22 20 25 25 C 1.53038 * 109.24101 * 54.85985 * 24 23 22 26 26 C 1.53040 * 109.53801 * 298.50929 * 25 24 23 27 27 C 1.46925 * 120.63128 * 185.56930 * 22 20 19 28 28 C 1.39312 * 119.85988 * 0.51029 * 19 18 17 29 29 H 4.40637 * 5.51398 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47008 * 61.96171 * 3 2 1 31 31 H 1.08995 * 109.46990 * 301.96094 * 3 2 1 32 32 H 0.97000 * 119.99863 * 179.97438 * 8 7 5 33 33 H 1.08002 * 119.93542 * 0.04530 * 16 15 13 34 34 H 1.07996 * 119.84671 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.92401 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.58894 * 246.20869 * 23 22 20 37 37 H 1.09001 * 109.58627 * 6.63187 * 23 22 20 38 38 H 1.09001 * 109.63394 * 294.86475 * 24 23 22 39 39 H 1.09001 * 109.42765 * 174.72399 * 24 23 22 40 40 H 1.09001 * 109.45883 * 178.49283 * 25 24 23 41 41 H 1.09001 * 109.46468 * 58.52824 * 25 24 23 42 42 H 1.09003 * 109.50078 * 301.41723 * 26 25 24 43 43 H 1.09001 * 109.49911 * 181.31947 * 26 25 24 44 44 H 1.08994 * 109.58918 * 353.36809 * 27 22 20 45 45 H 1.08998 * 109.58694 * 113.79380 * 27 22 20 46 46 H 1.08004 * 120.14856 * 179.74512 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3813 0.0473 5 6 3.2586 2.1030 -1.1090 6 1 3.7385 3.0704 -1.0926 7 6 2.7676 1.5906 -2.3048 8 7 2.0383 0.4981 -2.3010 9 14 3.1453 2.4559 -3.9167 10 1 3.9802 3.6550 -3.6510 11 1 3.8812 1.5301 -4.8148 12 1 1.8755 2.8700 -4.5655 13 6 3.4593 1.9408 1.2294 14 8 3.9544 3.0510 1.2607 15 6 3.2146 1.2054 2.4871 16 6 1.9619 0.6368 2.7338 17 6 1.7317 -0.0502 3.9088 18 6 2.7361 -0.1809 4.8478 19 6 3.9944 0.3776 4.6117 20 6 5.0700 0.2315 5.6158 21 8 5.7866 1.1770 5.8807 22 7 5.2560 -0.9499 6.2370 23 6 4.4761 -2.1322 5.8462 24 6 5.4502 -3.2771 5.5295 25 6 6.3721 -3.5016 6.7302 26 6 7.1885 -2.2341 6.9927 27 6 6.2381 -1.0786 7.3222 28 6 4.2323 1.0772 3.4307 29 1 -1.0502 -0.0004 -0.0002 30 1 3.0096 -0.4822 -0.9071 31 1 3.0096 -0.5431 0.8718 32 1 1.6955 0.1409 -3.1351 33 1 1.1723 0.7347 2.0034 34 1 0.7618 -0.4873 4.0947 35 1 2.5495 -0.7200 5.7648 36 1 3.8191 -2.4238 6.6656 37 1 3.8812 -1.9017 4.9624 38 1 6.0477 -3.0184 4.6553 39 1 4.8860 -4.1879 5.3286 40 1 7.0472 -4.3311 6.5196 41 1 5.7725 -3.7360 7.6097 42 1 7.7696 -1.9851 6.1048 43 1 7.8617 -2.4024 7.8333 44 1 6.8061 -0.1527 7.4127 45 1 5.7219 -1.2860 8.2595 46 1 5.2022 1.5145 3.2452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346807673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = 37.260774 kcal Electronic energy + Delta-G solvation = -29491.110116 eV Core-core repulsion = 25541.239431 eV Total energy + Delta-G solvation = -3949.870685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.61419 -39.31691 -37.72778 -37.17198 -35.33400 -33.29099 -32.30852 -31.58930 -31.40535 -30.78562 -30.36368 -26.61160 -25.91149 -25.10525 -23.74348 -23.17534 -22.54447 -21.08790 -19.97002 -19.01464 -18.02674 -17.37463 -16.62311 -16.54973 -16.09302 -15.75399 -15.43331 -14.85515 -14.78544 -14.74565 -14.28474 -14.14522 -14.01891 -13.76132 -13.59773 -13.37361 -13.12426 -12.88419 -12.64503 -12.56197 -12.31113 -12.03571 -11.63414 -11.50310 -11.38584 -11.23046 -11.14415 -11.04009 -10.90507 -10.84205 -10.52846 -10.38749 -9.85155 -9.56182 -9.35496 -8.87480 -8.81867 -8.77113 -8.67964 -8.40929 -8.05513 -6.38006 -3.94750 1.07570 1.44393 2.71071 2.88431 3.08890 3.20226 3.27236 3.55940 3.75109 3.99131 4.09047 4.13122 4.35413 4.50347 4.60182 4.69667 4.76385 4.82384 4.98829 5.00080 5.07981 5.12876 5.22513 5.26459 5.40304 5.46901 5.54119 5.54661 5.57513 5.63788 5.66588 5.69053 5.78428 5.81364 5.98342 6.04718 6.14794 6.26398 6.34530 6.47587 6.53264 6.74350 6.90936 7.02311 7.05953 7.26451 7.45231 7.89607 8.12348 8.33007 8.75262 9.01517 9.22996 9.77078 10.54913 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002917 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.194063 B = 9597.301296 C = 9864.432728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.091 4.091 3 C 0.224 3.776 4 N -0.429 5.429 5 C -0.301 4.301 6 H 0.110 0.890 7 C 0.027 3.973 8 N -0.872 5.872 9 Si 0.933 3.067 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.476 3.524 14 O -0.577 6.577 15 C -0.095 4.095 16 C -0.076 4.076 17 C -0.130 4.130 18 C -0.091 4.091 19 C -0.142 4.142 20 C 0.567 3.433 21 O -0.533 6.533 22 N -0.610 5.610 23 C 0.097 3.903 24 C -0.137 4.137 25 C -0.120 4.120 26 C -0.135 4.135 27 C 0.111 3.889 28 C -0.029 4.029 29 H 0.199 0.801 30 H 0.131 0.869 31 H 0.058 0.942 32 H 0.270 0.730 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.471 -13.257 15.242 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.093 4.093 3 C 0.101 3.899 4 N -0.146 5.146 5 C -0.428 4.428 6 H 0.128 0.872 7 C -0.175 4.175 8 N -0.512 5.512 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.265 3.735 14 O -0.462 6.462 15 C -0.099 4.099 16 C -0.095 4.095 17 C -0.148 4.148 18 C -0.109 4.109 19 C -0.145 4.145 20 C 0.356 3.644 21 O -0.410 6.410 22 N -0.344 5.344 23 C -0.026 4.026 24 C -0.175 4.175 25 C -0.157 4.157 26 C -0.174 4.174 27 C -0.011 4.011 28 C -0.049 4.049 29 H 0.216 0.784 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.061 -12.295 15.195 19.655 hybrid contribution -0.389 0.146 -0.906 0.996 sum 1.673 -12.149 14.290 18.831 Atomic orbital electron populations 1.24261 0.95355 1.02216 1.07903 1.23049 0.94185 0.98150 0.93875 1.18788 0.84431 0.84368 1.02327 1.43693 1.54307 1.11112 1.05477 1.19913 1.35989 1.03289 0.83647 0.87217 1.25345 0.95463 0.96800 0.99911 1.69954 1.32342 1.21361 1.27494 0.85734 0.78310 0.79322 0.80660 1.19119 1.20500 1.20704 1.17852 0.86140 0.86778 0.82722 1.90651 1.48780 1.20459 1.86313 1.20234 0.94267 0.98747 0.96610 1.22032 0.96921 0.93446 0.97054 1.20982 0.99100 1.00683 0.94003 1.21304 0.92231 0.98202 0.99207 1.19626 0.94611 1.04058 0.96228 1.18452 0.83336 0.82141 0.80431 1.90779 1.46832 1.38968 1.64412 1.47980 1.40292 1.09558 1.36613 1.22187 0.93854 0.84927 1.01594 1.22017 0.98302 0.98356 0.98854 1.21521 0.98399 0.97498 0.98303 1.21920 0.97995 0.94985 1.02451 1.21585 0.90585 1.00110 0.88822 1.21191 0.99385 0.93490 0.90823 0.78411 0.85212 0.92455 0.91914 0.84037 0.85292 0.85623 0.91294 0.88232 0.91183 0.90556 0.91701 0.91825 0.91350 0.90804 0.88898 0.91592 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.41 18.62 29.55 0.55 -4.86 16 2 C -0.09 -1.93 8.70 -37.12 -0.32 -2.25 16 3 C 0.22 4.87 4.76 -6.83 -0.03 4.84 16 4 N -0.43 -10.74 2.59 -119.05 -0.31 -11.05 16 5 C -0.30 -8.11 9.51 -15.00 -0.14 -8.26 16 6 H 0.11 3.13 7.19 -52.48 -0.38 2.75 16 7 C 0.03 0.69 5.30 -17.45 -0.09 0.59 16 8 N -0.87 -21.56 8.20 55.50 0.45 -21.11 16 9 Si 0.93 20.15 29.56 -169.99 -5.03 15.12 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.48 11.86 7.13 -12.38 -0.09 11.77 16 14 O -0.58 -16.48 16.63 5.28 0.09 -16.39 16 15 C -0.10 -1.92 4.62 -105.02 -0.49 -2.40 16 16 C -0.08 -1.31 7.78 -39.08 -0.30 -1.62 16 17 C -0.13 -1.74 10.02 -39.70 -0.40 -2.13 16 18 C -0.09 -1.15 7.39 -39.09 -0.29 -1.44 16 19 C -0.14 -2.21 5.06 -105.02 -0.53 -2.74 16 20 C 0.57 8.74 7.30 -12.32 -0.09 8.65 16 21 O -0.53 -10.14 16.37 5.32 0.09 -10.06 16 22 N -0.61 -7.01 2.97 -173.61 -0.51 -7.53 16 23 C 0.10 0.84 4.98 -3.49 -0.02 0.82 16 24 C -0.14 -1.04 6.10 -26.39 -0.16 -1.20 16 25 C -0.12 -0.80 5.88 -26.69 -0.16 -0.96 16 26 C -0.14 -1.06 6.08 -26.61 -0.16 -1.22 16 27 C 0.11 1.08 6.44 -3.71 -0.02 1.05 16 28 C -0.03 -0.54 9.34 -38.76 -0.36 -0.91 16 29 H 0.20 3.12 7.80 -54.08 -0.42 2.69 16 30 H 0.13 3.01 6.08 -51.93 -0.32 2.69 16 31 H 0.06 1.10 6.24 -51.93 -0.32 0.77 16 32 H 0.27 6.39 8.31 -40.82 -0.34 6.06 16 33 H 0.14 2.60 4.69 -52.49 -0.25 2.36 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.20 6.75 -52.49 -0.35 0.85 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.93 4.81 -51.93 -0.25 0.68 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.13 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -32.26 372.74 -8.73 -40.98 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.01 Total: 6.66 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.11 Total: -2.25 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.37 Total: -39.68 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: 0.17 Total: -26.45 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.26 -8.73 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346807673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.243 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds