Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 119.99930 * 2 1 4 4 H 1.09003 * 109.46727 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47234 * 119.99963 * 3 2 1 6 6 C 1.53007 * 109.47187 * 294.99922 * 5 3 2 7 7 C 1.52995 * 109.47093 * 240.00194 * 3 2 1 8 8 C 1.50693 * 109.47486 * 64.99620 * 7 3 2 9 9 O 1.21284 * 119.99903 * 0.02562 * 8 7 3 10 10 N 1.34780 * 119.99961 * 179.97438 * 8 7 3 11 11 C 1.46506 * 119.99768 * 180.02562 * 10 8 7 12 12 H 1.09006 * 110.88411 * 328.87926 * 11 10 8 13 13 C 1.55157 * 111.00310 * 205.00044 * 11 10 8 14 14 C 1.54322 * 102.94411 * 206.42174 * 13 11 10 15 15 N 1.47021 * 107.26600 * 22.19368 * 14 13 11 16 16 C 1.34780 * 125.64749 * 181.01771 * 15 14 13 17 17 O 1.21280 * 120.00423 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99795 * 0.03050 * 16 15 14 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47282 * 59.99711 * 24 22 20 26 26 H 1.48497 * 109.47200 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47280 * 300.00084 * 24 22 20 28 28 C 1.47426 * 108.70691 * 1.28623 * 15 14 13 29 29 H 1.07994 * 120.00408 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99913 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00506 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47689 * 54.99864 * 5 3 2 33 33 H 1.08999 * 109.47235 * 175.00194 * 5 3 2 34 34 H 1.08999 * 109.46811 * 60.00013 * 6 5 3 35 35 H 1.08994 * 109.47153 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.46758 * 300.00511 * 6 5 3 37 37 H 1.09004 * 109.46934 * 304.99475 * 7 3 2 38 38 H 1.09005 * 109.47354 * 185.00123 * 7 3 2 39 39 H 0.97000 * 120.00033 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.71854 * 88.05820 * 13 11 10 41 41 H 1.09003 * 110.87254 * 324.86363 * 13 11 10 42 42 H 1.08997 * 109.88244 * 262.78321 * 14 13 11 43 43 H 1.08990 * 109.88058 * 141.61040 * 14 13 11 44 44 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 45 45 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 46 46 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 47 47 H 1.08999 * 110.36516 * 94.48618 * 28 15 14 48 48 H 1.08997 * 110.36737 * 216.80150 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1336 -0.0005 5 6 2.9430 1.3862 1.2492 6 6 2.0563 1.4308 2.4953 7 6 2.9430 1.3862 -1.2492 8 6 2.0697 1.4300 -2.4765 9 8 0.8625 1.3999 -2.3632 10 7 2.6301 1.5037 -3.7001 11 6 1.7810 1.5469 -4.8932 12 1 0.8564 0.9925 -4.7324 13 6 2.5408 1.0126 -6.1361 14 6 1.8387 1.7328 -7.3065 15 7 1.1966 2.9356 -6.7565 16 6 0.4642 3.8247 -7.4563 17 8 -0.0201 4.7856 -6.8967 18 6 0.2471 3.6249 -8.9341 19 16 -0.7692 4.9750 -9.5826 20 6 -0.8624 4.5012 -11.2771 21 1 -0.3660 3.6034 -11.6148 22 6 -1.5728 5.2824 -12.1781 23 7 -2.1772 6.3768 -11.7665 24 14 -1.6709 4.7805 -13.9747 25 1 -2.3064 3.4425 -14.0809 26 1 -2.4813 5.7747 -14.7229 27 1 -0.3025 4.7253 -14.5488 28 6 1.4918 3.0116 -5.3141 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5905 0.5106 1.2952 33 1 3.5539 2.2879 1.2056 34 1 1.4455 0.5291 2.5390 35 1 2.6829 1.4890 3.3852 36 1 1.4088 2.3064 2.4493 37 1 3.5905 0.5106 -1.2951 38 1 3.5539 2.2879 -1.2056 39 1 3.5956 1.5282 -3.7907 40 1 2.4258 -0.0678 -6.2234 41 1 3.5956 1.2844 -6.0930 42 1 1.0857 1.0787 -7.7460 43 1 2.5724 2.0163 -8.0609 44 1 1.2099 3.6168 -9.4450 45 1 -0.2611 2.6753 -9.1016 46 1 -2.6741 6.9225 -12.3961 47 1 2.3657 3.6390 -5.1383 48 1 0.6302 3.3991 -4.7705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352923065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = -64.290741 kcal Electronic energy + Delta-G solvation = -26470.227539 eV Core-core repulsion = 22651.397201 eV Total energy + Delta-G solvation = -3818.830338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50032 -39.48658 -37.59050 -36.75783 -34.39898 -32.42387 -32.04402 -31.48726 -30.36085 -29.67947 -27.83654 -25.51132 -25.08971 -23.40274 -22.02091 -21.43155 -20.82887 -19.82753 -19.35091 -17.81866 -17.30800 -16.90898 -16.49456 -15.90415 -15.53590 -15.19505 -14.85542 -14.79929 -14.78385 -14.33461 -14.17356 -13.91269 -13.74290 -13.60181 -13.38267 -12.98106 -12.66033 -12.54518 -12.51416 -12.30306 -12.03083 -11.87137 -11.71919 -11.65109 -11.54283 -11.17804 -11.12588 -11.03656 -11.03235 -10.81295 -10.77062 -10.15047 -9.83007 -9.57561 -9.37703 -9.26259 -9.05320 -8.52508 -8.23069 -6.49740 -6.20693 -3.91611 2.20678 2.39917 2.62347 3.03402 3.08593 3.23864 3.27268 3.30224 3.62786 4.12383 4.20971 4.33791 4.37477 4.42229 4.44780 4.65517 4.85710 4.89302 4.95858 5.01948 5.05598 5.07884 5.08685 5.13548 5.14250 5.32450 5.39909 5.48067 5.48563 5.55063 5.59922 5.61550 5.66262 5.75312 5.76863 5.81897 5.88181 5.92941 5.95781 6.10496 6.14061 6.40940 6.51456 6.70734 7.17052 7.59497 7.63843 7.96868 8.35544 8.54862 9.24173 10.86674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028627 B = 0.001748 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.860985 B =16015.521464 C =16355.452382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.134 4.134 8 C 0.511 3.489 9 O -0.523 6.523 10 N -0.725 5.725 11 C 0.133 3.867 12 H 0.108 0.892 13 C -0.137 4.137 14 C 0.104 3.896 15 N -0.626 5.626 16 C 0.549 3.451 17 O -0.513 6.513 18 C -0.146 4.146 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.099 3.901 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.401 0.599 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.066 0.934 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.194 -16.036 23.261 32.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C -0.064 4.064 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.174 4.174 8 C 0.297 3.703 9 O -0.397 6.397 10 N -0.377 5.377 11 C 0.027 3.973 12 H 0.126 0.874 13 C -0.175 4.175 14 C -0.020 4.020 15 N -0.364 5.364 16 C 0.337 3.663 17 O -0.387 6.387 18 C -0.297 4.297 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.025 4.025 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.235 0.765 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.406 -14.400 24.084 31.542 hybrid contribution 1.079 -1.498 -2.038 2.750 sum 15.484 -15.898 22.046 31.281 Atomic orbital electron populations 1.23740 0.95960 1.01470 0.98581 1.22601 0.95965 0.96945 1.01903 1.20171 0.96615 0.97255 0.92393 0.89927 1.21536 0.97836 1.01909 0.94035 1.21762 0.99855 1.02243 0.97070 1.21722 0.98693 1.04378 0.92590 1.20763 0.89388 0.75606 0.84493 1.90759 1.14743 1.47862 1.86374 1.45913 1.10030 1.76249 1.05510 1.22124 0.95289 0.96071 0.83851 0.87419 1.22921 0.99962 1.01117 0.93513 1.21955 0.97034 0.86762 0.96217 1.48403 1.53509 1.25686 1.08846 1.20054 0.76552 0.81070 0.88582 1.90718 1.47916 1.29020 1.71003 1.23507 1.05625 1.07175 0.93383 1.85425 1.63682 1.27444 1.06797 1.22820 1.38879 1.13202 0.93554 0.90969 1.24991 0.94603 0.94525 0.99427 1.70010 1.31255 1.13456 1.35515 0.86220 0.78308 0.78403 0.82536 1.19933 1.20798 1.19954 1.22516 1.01784 0.96237 0.82011 0.88517 0.89199 0.88166 0.91881 0.91790 0.92382 0.92896 0.92713 0.88826 0.88649 0.76474 0.89322 0.89978 0.90836 0.90827 0.89267 0.89224 0.92117 0.91594 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 13.22 29.02 0.38 -1.08 16 2 C -0.16 -1.23 6.76 -36.02 -0.24 -1.47 16 3 C -0.05 -0.31 1.82 -91.77 -0.17 -0.48 16 4 H 0.08 0.73 7.60 -51.93 -0.39 0.34 16 5 C -0.12 -0.60 5.39 -26.73 -0.14 -0.74 16 6 C -0.15 -0.86 9.73 37.16 0.36 -0.50 16 7 C -0.13 -0.74 5.16 -27.89 -0.14 -0.88 16 8 C 0.51 4.51 7.58 -10.99 -0.08 4.43 16 9 O -0.52 -6.82 13.81 5.55 0.08 -6.74 16 10 N -0.72 -5.07 5.19 -51.61 -0.27 -5.34 16 11 C 0.13 1.23 3.44 -65.66 -0.23 1.00 16 12 H 0.11 1.22 7.54 -51.93 -0.39 0.83 16 13 C -0.14 -0.94 6.59 -24.90 -0.16 -1.10 16 14 C 0.10 1.06 6.49 -3.07 -0.02 1.04 16 15 N -0.63 -9.21 3.32 -170.39 -0.57 -9.78 16 16 C 0.55 10.93 7.87 -10.98 -0.09 10.84 16 17 O -0.51 -12.38 16.12 5.56 0.09 -12.29 16 18 C -0.15 -3.05 5.35 36.01 0.19 -2.85 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.10 1.27 6.61 -2.41 -0.02 1.25 16 29 H 0.10 0.99 7.83 -52.49 -0.41 0.58 16 30 H 0.09 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.36 7.38 -51.93 -0.38 -0.03 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.40 1.55 8.57 -40.82 -0.35 1.20 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.42 8.01 -51.93 -0.42 0.00 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 LS Contribution 409.00 15.07 6.16 6.16 Total: -1.00 -36.93 409.00 -9.39 -46.32 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.23 Total: -1.67 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.16 Total: -3.63 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.10 Total: -40.73 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.17 Total: -19.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.93 -9.39 -46.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352923065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.966 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds