Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47305 * 2 1 4 4 C 1.52999 * 109.47045 * 120.00335 * 2 1 3 5 5 H 1.08996 * 115.55226 * 325.66421 * 4 2 1 6 6 C 1.53079 * 117.49236 * 111.39772 * 4 2 1 7 7 C 1.53007 * 117.49639 * 179.97438 * 4 2 1 8 8 H 1.09006 * 117.49991 * 0.02562 * 7 4 2 9 9 C 1.50693 * 117.49991 * 145.02200 * 7 4 2 10 10 O 1.21279 * 120.00143 * 359.90696 * 9 7 4 11 11 N 1.34777 * 120.00129 * 179.91284 * 9 7 4 12 12 C 1.46505 * 120.00054 * 180.02562 * 11 9 7 13 13 H 1.09000 * 112.84576 * 336.18813 * 12 11 9 14 14 C 1.53780 * 113.69419 * 107.46236 * 12 11 9 15 15 C 1.53778 * 87.08092 * 139.99168 * 14 12 11 16 16 H 1.08998 * 113.68905 * 220.01231 * 15 14 12 17 17 N 1.46499 * 113.61557 * 89.11527 * 15 14 12 18 18 C 1.34777 * 119.99665 * 107.77998 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 S 1.81005 * 109.46906 * 179.97438 * 20 18 17 22 22 C 1.76201 * 99.99828 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00390 * 359.97438 * 22 21 20 24 24 C 1.38797 * 119.99869 * 179.97438 * 22 21 20 25 25 N 1.31633 * 119.99970 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00277 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46837 * 90.00131 * 26 24 22 28 28 H 1.48499 * 109.47248 * 210.00232 * 26 24 22 29 29 H 1.48498 * 109.46779 * 330.00348 * 26 24 22 30 30 C 1.53783 * 113.61103 * 205.00032 * 12 11 9 31 31 H 1.09008 * 109.47076 * 299.99665 * 1 2 3 32 32 H 1.08995 * 109.47295 * 59.99446 * 1 2 3 33 33 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46655 * 240.00000 * 2 1 3 35 35 H 1.09004 * 109.47235 * 300.00295 * 3 2 1 36 36 H 1.08994 * 109.47248 * 60.00390 * 3 2 1 37 37 H 1.09000 * 109.47220 * 180.02562 * 3 2 1 38 38 H 1.08990 * 117.49533 * 359.97438 * 6 4 2 39 39 H 1.09001 * 117.50977 * 214.95546 * 6 4 2 40 40 H 0.97004 * 119.99851 * 359.97438 * 11 9 7 41 41 H 1.08998 * 113.61038 * 25.44202 * 14 12 11 42 42 H 1.08998 * 113.61309 * 254.53784 * 14 12 11 43 43 H 0.97001 * 119.99790 * 287.49711 * 17 15 14 44 44 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 45 45 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 46 46 H 0.97008 * 120.00004 * 179.97438 * 25 24 22 47 47 H 1.09000 * 113.61551 * 105.38348 * 30 12 11 48 48 H 1.09004 * 113.61245 * 334.47820 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.4311 -0.5980 2.1448 6 6 2.7426 -2.0668 1.0509 7 6 3.5550 -0.8287 1.4339 8 1 4.1884 -0.3850 0.6656 9 6 4.0914 -0.7560 2.8402 10 8 3.3296 -0.6156 3.7734 11 7 5.4179 -0.8469 3.0611 12 6 5.9393 -0.7767 4.4284 13 1 5.2676 -0.2567 5.1114 14 6 6.4429 -2.1260 4.9677 15 6 7.6064 -1.3479 5.6046 16 1 8.5654 -1.8616 5.5375 17 7 7.3161 -0.8589 6.9547 18 6 7.9058 -1.4346 8.0211 19 8 8.6728 -2.3608 7.8634 20 6 7.6119 -0.9276 9.4095 21 16 8.5479 -1.8983 10.6169 22 6 8.0306 -1.1136 12.1074 23 1 7.3329 -0.2901 12.0701 24 6 8.5198 -1.5538 13.3294 25 7 9.3707 -2.5572 13.3748 26 14 7.9720 -0.7216 14.9095 27 1 6.7589 -1.4006 15.4316 28 1 9.0596 -0.8073 15.9169 29 1 7.6619 0.7047 14.6358 30 6 7.3961 -0.2905 4.5079 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8901 35 1 1.6766 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 3.1300 1.4424 -0.0005 38 1 2.8408 -2.4377 0.0308 39 1 2.5959 -2.8290 1.8162 40 1 6.0272 -0.9594 2.3148 41 1 6.7564 -2.8187 4.1868 42 1 5.7726 -2.5826 5.6960 43 1 6.7027 -0.1181 7.0807 44 1 7.9018 0.1207 9.4824 45 1 6.5458 -1.0248 9.6138 46 1 9.7129 -2.8647 14.2289 47 1 7.4954 0.7346 4.8650 48 1 7.9702 -0.4815 3.6012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353552316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = -72.163268 kcal Electronic energy + Delta-G solvation = -25932.025070 eV Core-core repulsion = 22112.853354 eV Total energy + Delta-G solvation = -3819.171716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62399 -40.78566 -39.39177 -38.20618 -35.24165 -34.59645 -34.24297 -33.49286 -30.61368 -28.02746 -27.69938 -26.77418 -26.64545 -24.25008 -23.73691 -22.25918 -21.34696 -20.79360 -20.43897 -19.83811 -18.28022 -18.14469 -17.33640 -17.08168 -16.88919 -16.45308 -16.15038 -16.02327 -15.90371 -15.64237 -14.98010 -14.96845 -14.64219 -14.37966 -14.05544 -13.99237 -13.64450 -13.50973 -13.42912 -13.34401 -13.18489 -13.15317 -13.01386 -12.90238 -12.59955 -12.17971 -12.05246 -11.94580 -11.75002 -11.64074 -11.56301 -11.21890 -11.15483 -11.05000 -10.99245 -10.77100 -10.29974 -10.18927 -9.98604 -8.67900 -8.35904 -6.14035 1.25230 1.41507 1.45259 1.45476 1.56107 1.56446 2.13363 2.22091 2.26974 2.85260 2.98249 3.29956 3.36723 3.54563 3.61625 3.76413 3.82563 3.87858 3.93566 4.01036 4.10685 4.18949 4.28295 4.39738 4.45100 4.48779 4.58069 4.68064 4.69694 4.77703 4.84228 4.85698 4.86840 4.96469 4.99447 5.00986 5.04476 5.07363 5.22542 5.28452 5.40742 5.42048 5.43880 5.54163 5.61785 6.18645 6.44736 6.56851 7.05461 7.20477 7.25908 8.73326 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.001615 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.335233 B =17336.397362 C =18053.591421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.121 4.121 5 H 0.087 0.913 6 C -0.138 4.138 7 C -0.186 4.186 8 H 0.153 0.847 9 C 0.535 3.465 10 O -0.590 6.590 11 N -0.700 5.700 12 C 0.124 3.876 13 H 0.096 0.904 14 C -0.162 4.162 15 C 0.113 3.887 16 H 0.095 0.905 17 N -0.699 5.699 18 C 0.538 3.462 19 O -0.561 6.561 20 C -0.132 4.132 21 S -0.148 6.148 22 C -0.549 4.549 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.910 5.910 26 Si 0.998 3.002 27 H -0.269 1.269 28 H -0.276 1.276 29 H -0.259 1.259 30 C -0.125 4.125 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.420 0.580 41 H 0.110 0.890 42 H 0.050 0.950 43 H 0.414 0.586 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.272 0.728 47 H 0.093 0.907 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 8.285 -33.819 37.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C -0.204 4.204 4 C -0.140 4.140 5 H 0.105 0.895 6 C -0.176 4.176 7 C -0.207 4.207 8 H 0.171 0.829 9 C 0.324 3.676 10 O -0.470 6.470 11 N -0.351 5.351 12 C 0.019 3.981 13 H 0.114 0.886 14 C -0.202 4.202 15 C 0.007 3.993 16 H 0.113 0.887 17 N -0.352 5.352 18 C 0.324 3.676 19 O -0.439 6.439 20 C -0.283 4.283 21 S 0.079 5.921 22 C -0.697 4.697 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.194 1.194 28 H -0.201 1.201 29 H -0.183 1.183 30 C -0.163 4.163 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.258 0.742 41 H 0.128 0.872 42 H 0.069 0.931 43 H 0.251 0.749 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.441 6.759 -33.339 36.221 hybrid contribution -1.023 1.324 1.518 2.259 sum -13.465 8.084 -31.821 35.486 Atomic orbital electron populations 1.21820 0.94674 1.02024 1.01891 1.20740 0.95977 0.95924 0.95265 1.21835 1.01388 0.95552 1.01642 1.22450 0.91714 0.99695 1.00154 0.89488 1.23169 1.00391 0.90078 1.03933 1.22331 0.96581 1.07295 0.94507 0.82911 1.20315 0.82461 0.74328 0.90519 1.90701 1.58536 1.51268 1.46538 1.45775 1.06955 1.73166 1.09176 1.22479 0.94883 0.96639 0.84139 0.88636 1.23959 0.97639 0.97990 1.00602 1.21765 0.99147 0.97453 0.80958 0.88700 1.45488 1.47650 1.37304 1.04801 1.20030 0.79349 0.81913 0.86277 1.90685 1.36975 1.29825 1.86436 1.23390 1.05371 1.04898 0.94666 1.85526 1.60285 1.47074 0.99169 1.23216 1.32453 1.21414 0.92606 0.90004 1.26114 0.94433 0.95576 1.02895 1.70181 1.30414 1.26557 1.27523 0.84958 0.78034 0.78817 0.76197 1.19404 1.20114 1.18254 1.23664 0.94099 0.99551 0.99004 0.93643 0.91444 0.92403 0.89229 0.91563 0.94015 0.92083 0.85027 0.89796 0.74241 0.87201 0.93101 0.74889 0.87023 0.87569 0.91949 0.88889 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.18 71.98 0.66 -0.67 16 2 C -0.06 -0.52 3.07 -10.80 -0.03 -0.55 16 3 C -0.15 -1.27 9.03 71.98 0.65 -0.62 16 4 C -0.12 -1.55 4.67 -10.77 -0.05 -1.60 16 5 H 0.09 1.68 7.64 -2.39 -0.02 1.66 16 6 C -0.14 -1.39 9.88 30.61 0.30 -1.08 16 7 C -0.19 -2.05 5.39 -11.55 -0.06 -2.11 16 8 H 0.15 0.74 7.61 -2.38 -0.02 0.72 16 9 C 0.54 9.67 7.61 87.65 0.67 10.34 16 10 O -0.59 -16.80 15.86 -3.03 -0.05 -16.85 16 11 N -0.70 -8.67 5.36 -440.03 -2.36 -11.02 16 12 C 0.12 1.95 4.11 45.52 0.19 2.14 16 13 H 0.10 1.95 7.46 -2.39 -0.02 1.93 16 14 C -0.16 -3.11 7.68 31.12 0.24 -2.87 16 15 C 0.11 2.33 4.33 45.52 0.20 2.53 16 16 H 0.09 2.32 7.46 -2.39 -0.02 2.30 16 17 N -0.70 -17.71 5.26 -440.04 -2.32 -20.02 16 18 C 0.54 19.97 7.85 87.66 0.69 20.66 16 19 O -0.56 -25.91 15.46 -3.04 -0.05 -25.96 16 20 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 21 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 22 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 23 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 24 C 0.01 0.84 5.49 84.86 0.47 1.31 16 25 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 26 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 29 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 30 C -0.12 -1.45 7.58 31.12 0.24 -1.22 16 31 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.48 7.90 -2.38 -0.02 0.46 16 35 H 0.07 0.43 8.14 -2.38 -0.02 0.42 16 36 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 0.44 7.29 -2.39 -0.02 0.43 16 38 H 0.13 0.61 8.05 -2.39 -0.02 0.59 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.42 2.14 8.73 -92.70 -0.81 1.33 16 41 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.41 8.11 8.70 -92.71 -0.81 7.30 16 44 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 45 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 46 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.13 0.79 8.12 -2.39 -0.02 0.77 16 Total: -1.00 -83.93 412.77 0.97 -82.96 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.65 Total: 20.03 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.23 Total: -9.78 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -4.39 Total: -87.10 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.09 Total: -42.81 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -83.93 0.97 -82.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353552316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.801 kcal (2) G-P(sol) polarization free energy of solvation -83.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds