Wall clock time and date at job start Sat Apr 11 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00053 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00174 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47356 * 89.99148 * 15 13 11 17 17 H 1.48497 * 109.47342 * 209.99750 * 15 13 11 18 18 H 1.48505 * 109.46847 * 329.99403 * 15 13 11 19 19 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 20 20 C 1.34782 * 119.99726 * 274.99704 * 19 3 2 21 21 O 1.21278 * 120.00302 * 0.02562 * 20 19 3 22 22 C 1.50704 * 119.99703 * 179.97438 * 20 19 3 23 23 H 1.08999 * 109.63948 * 300.00743 * 22 20 19 24 24 C 1.53032 * 109.63825 * 60.42492 * 22 20 19 25 25 C 1.50163 * 110.08976 * 168.89843 * 24 22 20 26 26 C 1.29437 * 124.14967 * 343.28930 * 25 24 22 27 27 C 1.50064 * 124.07924 * 0.23840 * 26 25 24 28 28 C 1.53028 * 110.14484 * 342.86487 * 27 26 25 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 0.97000 * 120.00636 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00390 * 95.00648 * 19 3 2 41 41 H 1.08998 * 109.35680 * 289.32964 * 24 22 20 42 42 H 1.09004 * 109.35184 * 48.91313 * 24 22 20 43 43 H 1.08001 * 117.88452 * 163.03125 * 25 24 22 44 44 H 1.08009 * 117.95853 * 180.25721 * 26 25 24 45 45 H 1.09001 * 109.35819 * 222.66553 * 27 26 25 46 46 H 1.08990 * 109.24895 * 103.00470 * 27 26 25 47 47 H 1.08999 * 109.64370 * 289.75598 * 28 27 26 48 48 H 1.09000 * 109.81499 * 169.22555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 16 7.7034 4.4751 -0.0940 11 6 8.0232 6.1982 0.0876 12 1 7.2044 6.8868 0.2356 13 6 9.3275 6.6706 0.0415 14 7 9.5665 7.9578 0.1776 15 14 10.7438 5.4797 -0.2138 16 1 11.0096 5.3308 -1.6672 17 1 11.9587 6.0034 0.4605 18 1 10.3889 4.1578 0.3624 19 7 1.6524 2.0974 1.2519 20 6 0.4350 2.6644 1.3669 21 8 -0.3397 2.6320 0.4344 22 6 0.0361 3.3376 2.6549 23 1 0.0662 2.6151 3.4705 24 6 0.9982 4.4897 2.9525 25 6 0.4626 5.3324 4.0741 26 6 -0.7659 5.3050 4.4808 27 6 -1.8273 4.4228 3.8916 28 6 -1.3824 3.9061 2.5216 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 10.4780 8.2881 0.1451 40 1 2.2718 2.1232 1.9979 41 1 1.9709 4.0851 3.2323 42 1 1.1088 5.1073 2.0612 43 1 1.1472 6.0005 4.5754 44 1 -1.0445 5.9579 5.2948 45 1 -2.7500 4.9924 3.7806 46 1 -2.0023 3.5776 4.5571 47 1 -1.3826 4.7257 1.8031 48 1 -2.0609 3.1227 2.1840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356870276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:34 Heat of formation + Delta-G solvation = -82.830266 kcal Electronic energy + Delta-G solvation = -27271.399951 eV Core-core repulsion = 23451.765679 eV Total energy + Delta-G solvation = -3819.634272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81640 -39.38154 -38.24088 -36.60247 -33.93599 -33.02923 -32.46440 -31.39807 -31.00761 -30.17038 -27.97588 -25.64427 -24.49778 -23.59569 -23.20263 -21.32076 -20.63477 -20.40397 -18.31002 -18.06855 -17.53241 -16.95008 -16.47344 -16.14622 -15.90520 -15.33297 -15.17507 -14.97233 -14.77661 -14.12784 -13.96100 -13.92332 -13.73661 -13.53529 -13.49428 -13.27460 -13.06350 -12.81850 -12.70534 -12.57310 -12.36052 -11.92503 -11.83830 -11.48051 -11.37908 -11.28876 -11.13348 -11.09970 -11.03252 -10.71990 -10.63738 -9.94816 -9.88832 -9.62348 -9.36019 -9.34147 -9.10225 -9.01778 -8.53662 -6.95147 -6.31377 -4.03507 1.95244 2.33557 2.68171 2.80644 2.91282 3.26469 3.31765 3.47967 3.60965 4.16691 4.26075 4.30603 4.32500 4.44416 4.63975 4.72377 4.77063 4.79911 4.84731 4.94652 5.04013 5.07582 5.09185 5.15776 5.16567 5.25415 5.28005 5.45503 5.47478 5.48990 5.55872 5.59789 5.67222 5.71113 5.72607 5.82574 5.84429 5.92411 5.96590 6.11910 6.18257 6.29754 6.41223 6.59805 7.15403 7.50572 7.91609 7.91970 8.39062 8.40673 9.14694 10.77867 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.002608 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.219962 B =10735.058889 C =12767.417675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.737 5.737 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.141 6.141 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.726 5.726 20 C 0.520 3.480 21 O -0.530 6.530 22 C -0.108 4.108 23 H 0.098 0.902 24 C -0.084 4.084 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.092 4.092 28 C -0.099 4.099 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.403 0.597 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.876 -11.903 7.055 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.011 4.011 6 N -0.392 5.392 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.379 5.379 20 C 0.307 3.693 21 O -0.406 6.406 22 C -0.129 4.129 23 H 0.116 0.884 24 C -0.121 4.121 25 C -0.170 4.170 26 C -0.176 4.176 27 C -0.129 4.129 28 C -0.137 4.137 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.237 0.763 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.995 -13.309 6.084 27.256 hybrid contribution -0.059 1.290 0.625 1.434 sum -23.053 -12.019 6.709 26.850 Atomic orbital electron populations 1.21779 0.94559 1.00658 1.03023 1.21883 0.97228 0.95116 1.02822 1.21336 0.93466 0.94415 0.87913 0.88560 1.21604 0.91618 0.84510 1.03410 1.45944 1.07675 1.09026 1.76560 1.20296 0.81511 0.91023 0.75486 1.90710 1.55493 1.46108 1.46904 1.23277 1.03072 0.95436 1.05713 1.84792 0.97810 1.13034 1.95819 1.22309 0.97202 0.89866 1.57551 0.89392 1.24716 0.98283 0.95043 0.93268 1.69934 1.21457 1.12578 1.47696 0.86736 0.82131 0.83092 0.79892 1.19199 1.19934 1.15922 1.46153 1.16994 1.58025 1.16745 1.20597 0.81308 0.77722 0.89720 1.90720 1.50924 1.58554 1.40433 1.21432 0.97791 0.98053 0.95662 0.88411 1.20460 0.97980 0.95328 0.98311 1.22009 0.96723 1.00110 0.98188 1.22080 0.94851 1.00098 1.00560 1.20494 0.97644 0.98698 0.96106 1.21415 0.94052 1.01230 0.96954 0.93493 0.92563 0.92089 0.90640 0.91489 0.89973 0.90894 0.76583 0.88520 0.88494 0.91911 0.76263 0.90233 0.90082 0.87351 0.87823 0.90676 0.90859 0.91025 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.51 37.15 0.32 -0.89 16 2 C -0.13 -0.96 5.61 -26.73 -0.15 -1.11 16 3 C 0.13 1.05 2.42 -67.93 -0.16 0.89 16 4 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 5 C 0.11 1.08 5.23 -4.04 -0.02 1.06 16 6 N -0.74 -8.40 5.39 -60.30 -0.32 -8.73 16 7 C 0.53 8.82 7.85 -10.98 -0.09 8.74 16 8 O -0.52 -10.61 15.86 5.55 0.09 -10.52 16 9 C -0.12 -2.31 6.16 36.01 0.22 -2.08 16 10 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 11 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 12 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 14 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 15 Si 0.86 21.55 27.74 -169.99 -4.72 16.84 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 19 N -0.73 -5.10 4.38 -53.80 -0.24 -5.33 16 20 C 0.52 4.40 5.70 -10.98 -0.06 4.34 16 21 O -0.53 -6.16 13.03 5.56 0.07 -6.09 16 22 C -0.11 -0.74 2.57 -91.55 -0.24 -0.98 16 23 H 0.10 0.57 8.13 -51.93 -0.42 0.15 16 24 C -0.08 -0.57 5.30 -28.13 -0.15 -0.72 16 25 C -0.15 -1.10 9.80 -35.85 -0.35 -1.45 16 26 C -0.16 -1.08 9.80 -35.90 -0.35 -1.43 16 27 C -0.09 -0.57 6.12 -28.18 -0.17 -0.74 16 28 C -0.10 -0.73 4.70 -26.51 -0.12 -0.86 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.53 5.64 -51.93 -0.29 0.24 16 31 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 3.79 8.14 -40.82 -0.33 3.46 16 37 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 38 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.40 2.31 8.30 -40.82 -0.34 1.97 16 41 H 0.08 0.46 7.91 -51.93 -0.41 0.05 16 42 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.10 0.62 8.06 -52.48 -0.42 0.20 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 48 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -34.17 398.58 -9.52 -43.69 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.08 Total: 2.27 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.12 Total: -7.07 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.21 Total: -39.64 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.16 Total: -16.60 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.17 -9.52 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356870276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.137 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds