Wall clock time and date at job start Sat Apr 11 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00053 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00174 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47356 * 89.99148 * 15 13 11 17 17 H 1.48497 * 109.47342 * 209.99750 * 15 13 11 18 18 H 1.48505 * 109.46847 * 329.99403 * 15 13 11 19 19 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 20 20 C 1.34782 * 119.99726 * 274.99704 * 19 3 2 21 21 O 1.21278 * 120.00302 * 0.02562 * 20 19 3 22 22 C 1.50704 * 119.99703 * 179.97438 * 20 19 3 23 23 H 1.08999 * 109.63948 * 300.00743 * 22 20 19 24 24 C 1.53032 * 109.63825 * 60.42492 * 22 20 19 25 25 C 1.50163 * 110.08976 * 168.89843 * 24 22 20 26 26 C 1.29437 * 124.14967 * 343.28930 * 25 24 22 27 27 C 1.50064 * 124.07924 * 0.23840 * 26 25 24 28 28 C 1.53028 * 110.14484 * 342.86487 * 27 26 25 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 0.97000 * 120.00636 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00390 * 95.00648 * 19 3 2 41 41 H 1.08998 * 109.35680 * 289.32964 * 24 22 20 42 42 H 1.09004 * 109.35184 * 48.91313 * 24 22 20 43 43 H 1.08001 * 117.88452 * 163.03125 * 25 24 22 44 44 H 1.08009 * 117.95853 * 180.25721 * 26 25 24 45 45 H 1.09001 * 109.35819 * 222.66553 * 27 26 25 46 46 H 1.08990 * 109.24895 * 103.00470 * 27 26 25 47 47 H 1.08999 * 109.64370 * 289.75598 * 28 27 26 48 48 H 1.09000 * 109.81499 * 169.22555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 16 7.7034 4.4751 -0.0940 11 6 8.0232 6.1982 0.0876 12 1 7.2044 6.8868 0.2356 13 6 9.3275 6.6706 0.0415 14 7 9.5665 7.9578 0.1776 15 14 10.7438 5.4797 -0.2138 16 1 11.0096 5.3308 -1.6672 17 1 11.9587 6.0034 0.4605 18 1 10.3889 4.1578 0.3624 19 7 1.6524 2.0974 1.2519 20 6 0.4350 2.6644 1.3669 21 8 -0.3397 2.6320 0.4344 22 6 0.0361 3.3376 2.6549 23 1 0.0662 2.6151 3.4705 24 6 0.9982 4.4897 2.9525 25 6 0.4626 5.3324 4.0741 26 6 -0.7659 5.3050 4.4808 27 6 -1.8273 4.4228 3.8916 28 6 -1.3824 3.9061 2.5216 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 10.4780 8.2881 0.1451 40 1 2.2718 2.1232 1.9979 41 1 1.9709 4.0851 3.2323 42 1 1.1088 5.1073 2.0612 43 1 1.1472 6.0005 4.5754 44 1 -1.0445 5.9579 5.2948 45 1 -2.7500 4.9924 3.7806 46 1 -2.0023 3.5776 4.5571 47 1 -1.3826 4.7257 1.8031 48 1 -2.0609 3.1227 2.1840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356870276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:33 Heat of formation + Delta-G solvation = -105.441193 kcal Electronic energy + Delta-G solvation = -27272.380434 eV Core-core repulsion = 23451.765679 eV Total energy + Delta-G solvation = -3820.614755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52969 -40.58045 -38.89704 -37.43201 -35.00506 -34.66369 -33.67976 -31.97776 -31.64107 -31.36102 -28.98664 -27.83493 -25.13414 -24.35044 -23.79947 -22.07793 -21.56626 -21.29382 -19.91104 -18.85499 -18.37641 -17.84077 -17.65355 -17.20595 -16.99532 -16.67058 -16.48978 -16.00842 -15.59690 -15.42228 -14.96689 -14.81533 -14.63511 -14.60661 -14.45942 -14.27712 -13.94077 -13.87419 -13.52493 -13.34121 -13.25845 -13.10863 -13.02621 -12.92057 -12.69212 -12.48571 -12.16494 -11.96993 -11.85521 -11.76468 -11.66024 -11.28495 -11.16770 -11.03295 -10.64656 -10.53021 -10.18460 -10.03980 -9.87148 -8.98632 -8.51107 -6.21661 0.99426 1.32212 1.42185 1.47097 1.55733 1.56137 1.66604 2.09910 2.24306 2.28234 2.72005 2.87354 3.53708 3.60881 3.73693 3.82847 3.89251 4.01952 4.11584 4.22711 4.23504 4.31028 4.40049 4.41732 4.47773 4.50559 4.55225 4.63838 4.67837 4.74478 4.81461 4.92950 4.94335 5.04369 5.07219 5.08946 5.17570 5.27939 5.33653 5.35924 5.45767 5.53623 5.71079 5.77364 6.07424 6.12119 6.39832 6.54330 6.94166 7.15706 7.27574 8.61347 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.002608 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.219962 B =10735.058889 C =12767.417675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.145 3.855 4 H 0.084 0.916 5 C 0.117 3.883 6 N -0.712 5.712 7 C 0.538 3.462 8 O -0.558 6.558 9 C -0.113 4.113 10 S -0.172 6.172 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.045 3.955 14 N -0.918 5.918 15 Si 0.914 3.086 16 H -0.264 1.264 17 H -0.260 1.260 18 H -0.234 1.234 19 N -0.717 5.717 20 C 0.522 3.478 21 O -0.564 6.564 22 C -0.101 4.101 23 H 0.115 0.885 24 C -0.082 4.082 25 C -0.165 4.165 26 C -0.160 4.160 27 C -0.090 4.090 28 C -0.097 4.097 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.412 0.588 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.477 -13.501 7.892 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.039 3.961 4 H 0.102 0.898 5 C -0.007 4.007 6 N -0.366 5.366 7 C 0.324 3.676 8 O -0.436 6.436 9 C -0.264 4.264 10 S 0.054 5.946 11 C -0.676 4.676 12 H 0.080 0.920 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.736 3.264 16 H -0.188 1.188 17 H -0.185 1.185 18 H -0.158 1.158 19 N -0.370 5.370 20 C 0.309 3.691 21 O -0.442 6.442 22 C -0.123 4.123 23 H 0.132 0.868 24 C -0.119 4.119 25 C -0.183 4.183 26 C -0.178 4.178 27 C -0.127 4.127 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.249 0.751 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.631 -14.898 6.944 28.785 hybrid contribution -0.081 1.800 0.369 1.840 sum -23.713 -13.097 7.313 28.059 Atomic orbital electron populations 1.21706 0.95342 1.00803 1.01667 1.21863 0.96320 0.94571 1.03888 1.21170 0.92079 0.94954 0.87864 0.89830 1.21717 0.92385 0.82978 1.03657 1.45697 1.05974 1.10582 1.74317 1.19869 0.82781 0.89460 0.75514 1.90705 1.56847 1.46739 1.49328 1.23278 0.98219 0.97600 1.07313 1.84686 1.03870 1.10040 1.95981 1.22467 0.96669 0.91615 1.56847 0.92029 1.25577 1.00819 0.96564 0.93108 1.70015 1.22434 1.14249 1.48932 0.85865 0.79474 0.81041 0.79987 1.18836 1.18451 1.15795 1.46068 1.16792 1.57403 1.16747 1.20848 0.81165 0.77288 0.89764 1.90716 1.51956 1.59882 1.41648 1.21406 0.97370 0.98281 0.95204 0.86757 1.20454 0.98549 0.95084 0.97817 1.22101 0.97055 1.00572 0.98573 1.22245 0.94824 1.00063 1.00645 1.20501 0.97673 0.99106 0.95409 1.21368 0.94448 1.00421 0.97309 0.92555 0.93558 0.93805 0.89735 0.90292 0.90157 0.90146 0.75126 0.87331 0.86608 0.91391 0.75124 0.88939 0.91127 0.87254 0.87041 0.90077 0.89647 0.92774 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.51 71.98 0.61 -1.54 16 2 C -0.13 -1.58 5.61 30.59 0.17 -1.41 16 3 C 0.14 1.99 2.42 44.99 0.11 2.10 16 4 H 0.08 1.45 7.58 -2.39 -0.02 1.43 16 5 C 0.12 1.93 5.23 86.38 0.45 2.38 16 6 N -0.71 -14.49 5.39 -463.07 -2.49 -16.99 16 7 C 0.54 16.83 7.85 87.66 0.69 17.52 16 8 O -0.56 -22.03 15.86 -3.04 -0.05 -22.08 16 9 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 10 S -0.17 -8.43 18.55 -56.49 -1.05 -9.48 16 11 C -0.53 -30.22 10.04 67.96 0.68 -29.54 16 12 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 13 C 0.04 2.59 5.50 84.86 0.47 3.06 16 14 N -0.92 -55.51 13.97 21.65 0.30 -55.21 16 15 Si 0.91 44.36 27.74 68.60 1.90 46.26 16 16 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.23 -11.24 6.74 99.48 0.67 -10.57 16 19 N -0.72 -8.55 4.38 -442.51 -1.94 -10.49 16 20 C 0.52 8.14 5.70 87.66 0.50 8.64 16 21 O -0.56 -12.82 13.03 -3.02 -0.04 -12.86 16 22 C -0.10 -1.24 2.57 -11.40 -0.03 -1.27 16 23 H 0.11 1.05 8.13 -2.39 -0.02 1.03 16 24 C -0.08 -0.99 5.30 29.69 0.16 -0.83 16 25 C -0.16 -2.15 9.80 27.07 0.27 -1.89 16 26 C -0.16 -1.94 9.80 27.04 0.27 -1.68 16 27 C -0.09 -0.98 6.12 29.66 0.18 -0.80 16 28 C -0.10 -1.37 4.70 30.73 0.14 -1.23 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.82 5.64 -2.39 -0.01 0.80 16 31 H 0.04 0.83 7.85 -2.39 -0.02 0.81 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.41 6.71 8.14 -92.71 -0.75 5.95 16 37 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 38 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.41 3.54 8.30 -92.71 -0.77 2.77 16 41 H 0.09 0.85 7.91 -2.39 -0.02 0.84 16 42 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 43 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 48 H 0.07 1.04 7.90 -2.39 -0.02 1.03 16 Total: -1.00 -74.14 398.58 1.14 -73.00 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.60 Total: 17.92 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.10 Total: -10.07 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -4.13 Total: -82.69 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.09 Total: -34.94 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.48 kcal Total: -74.14 1.14 -73.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356870276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.437 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds