Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46745 * 2 1 4 4 H 1.09004 * 109.47098 * 54.99801 * 3 2 1 5 5 C 1.52992 * 109.47013 * 174.99509 * 3 2 1 6 6 N 1.46506 * 109.47161 * 174.99834 * 5 3 2 7 7 C 1.34773 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 6 5 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 5 10 10 S 1.80996 * 109.47276 * 179.72626 * 9 7 6 11 11 C 1.76195 * 99.99998 * 179.97438 * 10 9 7 12 12 H 1.08007 * 120.00003 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00413 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99814 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00484 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47100 * 89.99929 * 15 13 11 17 17 H 1.48505 * 109.47262 * 210.00143 * 15 13 11 18 18 H 1.48505 * 109.47183 * 330.00192 * 15 13 11 19 19 N 1.46495 * 109.47391 * 294.99848 * 3 2 1 20 20 C 1.34784 * 119.99830 * 84.99639 * 19 3 2 21 21 O 1.21273 * 120.00404 * 0.02562 * 20 19 3 22 22 C 1.50708 * 119.99579 * 180.02562 * 20 19 3 23 23 H 1.09005 * 109.63490 * 300.00020 * 22 20 19 24 24 C 1.53021 * 109.64374 * 60.42079 * 22 20 19 25 25 C 1.50162 * 110.09538 * 168.90128 * 24 22 20 26 26 C 1.29444 * 124.14431 * 343.28688 * 25 24 22 27 27 C 1.50069 * 124.07891 * 0.24176 * 26 25 24 28 28 C 1.53021 * 110.14381 * 342.86400 * 27 26 25 29 29 H 1.09000 * 109.47431 * 60.00353 * 1 2 3 30 30 H 1.09001 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47367 * 300.00137 * 1 2 3 32 32 H 1.08993 * 109.47598 * 240.00342 * 2 1 3 33 33 H 1.08994 * 109.47009 * 119.99524 * 2 1 3 34 34 H 1.09004 * 109.47116 * 55.00469 * 5 3 2 35 35 H 1.08998 * 109.47794 * 295.00381 * 5 3 2 36 36 H 0.96998 * 119.99507 * 0.02562 * 6 5 3 37 37 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 38 38 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 39 39 H 0.97001 * 120.00629 * 180.02562 * 14 13 11 40 40 H 0.97001 * 119.99963 * 265.00524 * 19 3 2 41 41 H 1.08998 * 109.36262 * 289.32882 * 24 22 20 42 42 H 1.08999 * 109.35460 * 48.91097 * 24 22 20 43 43 H 1.07997 * 117.88958 * 163.03007 * 25 24 22 44 44 H 1.08003 * 117.96093 * 180.25842 * 26 25 24 45 45 H 1.09004 * 109.35267 * 222.66305 * 27 26 25 46 46 H 1.08995 * 109.24791 * 103.00727 * 27 26 25 47 47 H 1.09003 * 109.64243 * 289.75312 * 28 27 26 48 48 H 1.09002 * 109.81250 * 169.22825 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4445 0.1258 6 7 4.0629 2.8170 0.0060 7 6 5.3854 3.0633 0.0870 8 8 6.1628 2.1494 0.2640 9 6 5.8979 4.4752 -0.0357 10 16 7.7010 4.4785 0.1219 11 6 8.0205 6.2022 -0.0554 12 1 7.2021 6.8901 -0.2087 13 6 9.3238 6.6760 0.0017 14 7 10.3213 5.8375 0.1880 15 14 9.6626 8.5032 -0.1870 16 1 9.6314 9.1529 1.1480 17 1 11.0006 8.6978 -0.8011 18 1 8.6250 9.1117 -1.0579 19 7 1.6524 2.0976 -1.2518 20 6 0.4350 2.6644 -1.3669 21 8 -0.3395 2.6326 -0.4342 22 6 0.0361 3.3377 -2.6549 23 1 0.7259 4.1537 -2.8705 24 6 0.0684 2.3211 -3.7982 25 6 -0.5798 2.9008 -5.0224 26 6 -1.3509 3.9405 -5.0130 27 6 -1.7013 4.7163 -3.7772 28 6 -1.3901 3.8878 -2.5289 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9954 0.8313 -0.6658 35 1 3.8498 1.0378 1.0961 36 1 3.4407 3.5485 -0.1308 37 1 5.6173 4.8803 -1.0079 38 1 5.4631 5.0894 0.7529 39 1 11.2322 6.1685 0.2283 40 1 2.2719 2.1232 -1.9977 41 1 1.1031 2.0612 -4.0216 42 1 -0.4709 1.4227 -3.4981 43 1 -0.3870 2.4218 -5.9710 44 1 -1.7681 4.2700 -5.9531 45 1 -2.7635 4.9606 -3.7931 46 1 -1.1190 5.6374 -3.7540 47 1 -2.0964 3.0610 -2.4524 48 1 -1.4636 4.5157 -1.6409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356870277.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = -105.957629 kcal Electronic energy + Delta-G solvation = -27093.994866 eV Core-core repulsion = 23273.357717 eV Total energy + Delta-G solvation = -3820.637150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52879 -40.54808 -38.88163 -37.42683 -34.98893 -34.57632 -33.65900 -31.97415 -31.66182 -31.30932 -28.95321 -27.63784 -25.11539 -24.36392 -23.78602 -22.07757 -21.53132 -21.28493 -19.85522 -18.87095 -18.36187 -17.79895 -17.62579 -17.13057 -16.87262 -16.55932 -16.33972 -16.29359 -15.77154 -15.17557 -14.86103 -14.68842 -14.55506 -14.54983 -14.41859 -14.30896 -13.94065 -13.84693 -13.49606 -13.21049 -13.16027 -13.11947 -12.94413 -12.87473 -12.63681 -12.49404 -12.18275 -11.91330 -11.80593 -11.72269 -11.66481 -11.29246 -11.14000 -10.98249 -10.63497 -10.27151 -10.16372 -10.04094 -9.86599 -8.65697 -8.34354 -6.11972 1.27204 1.42697 1.42820 1.47283 1.57442 1.60668 1.66896 2.10824 2.26957 2.31653 2.99939 3.32242 3.53526 3.61534 3.74091 3.87045 3.93006 4.04363 4.12276 4.23698 4.29283 4.31176 4.39964 4.42004 4.50585 4.51642 4.55197 4.63462 4.68353 4.74420 4.81084 4.93065 4.94234 5.04006 5.07128 5.08656 5.17564 5.28123 5.34260 5.36994 5.42465 5.46134 5.53499 5.77876 6.07437 6.20222 6.43889 6.54582 7.07278 7.21101 7.27599 8.74738 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.002394 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.867186 B =11691.791361 C =13464.488356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.146 3.854 4 H 0.084 0.916 5 C 0.116 3.884 6 N -0.713 5.713 7 C 0.537 3.463 8 O -0.561 6.561 9 C -0.131 4.131 10 S -0.148 6.148 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.258 1.258 19 N -0.717 5.717 20 C 0.522 3.478 21 O -0.564 6.564 22 C -0.106 4.106 23 H 0.111 0.889 24 C -0.077 4.077 25 C -0.163 4.163 26 C -0.161 4.161 27 C -0.092 4.092 28 C -0.096 4.096 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.412 0.588 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.903 -6.884 -9.377 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.041 3.959 4 H 0.102 0.898 5 C -0.008 4.008 6 N -0.367 5.367 7 C 0.322 3.678 8 O -0.439 6.439 9 C -0.282 4.282 10 S 0.079 5.921 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.181 1.181 19 N -0.370 5.370 20 C 0.310 3.690 21 O -0.442 6.442 22 C -0.127 4.127 23 H 0.129 0.871 24 C -0.115 4.115 25 C -0.181 4.181 26 C -0.179 4.179 27 C -0.129 4.129 28 C -0.135 4.135 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.004 -8.474 -8.398 28.610 hybrid contribution -0.318 2.180 -0.508 2.261 sum -26.321 -6.294 -8.906 28.491 Atomic orbital electron populations 1.21704 0.95272 1.00791 1.01688 1.21861 0.96348 0.94572 1.03862 1.21148 0.91909 0.94969 0.87902 0.89789 1.21702 0.92504 0.83128 1.03461 1.45706 1.06005 1.10457 1.74495 1.19988 0.82674 0.89744 0.75359 1.90705 1.56997 1.47029 1.49196 1.23379 1.01069 0.97134 1.06664 1.85550 0.99406 1.11874 1.95278 1.23199 0.96161 0.92614 1.57414 0.89983 1.26108 0.94762 1.04363 0.93888 1.70176 1.00072 1.37108 1.47387 0.84972 0.77960 0.76318 0.78851 1.19463 1.20309 1.18141 1.46065 1.16799 1.57428 1.16674 1.20856 0.81085 0.77424 0.89682 1.90713 1.51974 1.59766 1.41784 1.21435 0.99684 0.99561 0.91989 0.87126 1.20416 1.02143 0.97105 0.91787 1.22116 0.99000 0.98137 0.98815 1.22242 0.99146 0.97311 0.99198 1.20509 1.02339 0.98302 0.91783 1.21355 0.94356 0.99703 0.98037 0.93504 0.92573 0.93805 0.90284 0.89836 0.90362 0.90420 0.75136 0.87070 0.87631 0.92000 0.75149 0.88944 0.90911 0.86639 0.86929 0.90045 0.90130 0.92420 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.51 71.98 0.61 -1.64 16 2 C -0.13 -1.72 5.61 30.60 0.17 -1.55 16 3 C 0.15 2.18 2.41 44.99 0.11 2.29 16 4 H 0.08 1.54 7.58 -2.38 -0.02 1.52 16 5 C 0.12 2.15 5.23 86.38 0.45 2.60 16 6 N -0.71 -16.00 5.39 -463.05 -2.49 -18.49 16 7 C 0.54 18.44 7.85 87.66 0.69 19.12 16 8 O -0.56 -24.51 15.86 -3.04 -0.05 -24.56 16 9 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 10 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 11 C -0.55 -30.71 9.50 67.95 0.65 -30.07 16 12 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.77 5.49 84.86 0.47 1.23 16 14 N -0.91 -55.42 13.22 21.65 0.29 -55.13 16 15 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 19 N -0.72 -9.13 4.38 -442.53 -1.94 -11.06 16 20 C 0.52 8.38 5.70 87.66 0.50 8.88 16 21 O -0.56 -13.06 13.04 -3.01 -0.04 -13.10 16 22 C -0.11 -1.31 2.57 -11.40 -0.03 -1.34 16 23 H 0.11 1.18 8.13 -2.38 -0.02 1.16 16 24 C -0.08 -0.78 5.30 29.69 0.16 -0.63 16 25 C -0.16 -1.73 9.80 27.07 0.27 -1.46 16 26 C -0.16 -1.76 9.80 27.04 0.27 -1.50 16 27 C -0.09 -1.03 6.12 29.66 0.18 -0.85 16 28 C -0.10 -1.37 4.70 30.73 0.14 -1.23 16 29 H 0.05 0.86 5.65 -2.39 -0.01 0.84 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.86 7.85 -2.39 -0.02 0.85 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.41 7.31 8.14 -92.71 -0.75 6.56 16 37 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.41 3.92 8.30 -92.71 -0.77 3.15 16 41 H 0.09 0.67 7.92 -2.39 -0.02 0.65 16 42 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 43 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 48 H 0.06 1.06 7.90 -2.39 -0.02 1.04 16 Total: -1.00 -76.56 401.27 1.13 -75.43 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.56 Total: 21.68 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.07 Total: -10.67 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -4.15 Total: -84.69 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.09 Total: -37.65 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -76.56 1.13 -75.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356870277.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.532 kcal (2) G-P(sol) polarization free energy of solvation -76.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds