Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 H 1.09000 * 109.47321 * 304.99972 * 3 2 1 5 5 C 1.53004 * 109.47023 * 185.00191 * 3 2 1 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 3 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 H 1.08993 * 115.56397 * 34.25975 * 9 7 6 11 11 C 1.53131 * 117.51214 * 248.45829 * 9 7 6 12 12 C 1.52460 * 117.51112 * 179.97438 * 9 7 6 13 13 C 1.53255 * 128.58796 * 349.84747 * 12 9 7 14 14 C 1.53887 * 86.88729 * 194.88865 * 13 12 9 15 15 C 1.53254 * 128.58610 * 225.04282 * 12 9 7 16 16 N 1.46494 * 109.47389 * 65.00406 * 3 2 1 17 17 C 1.34776 * 120.00207 * 275.00150 * 16 3 2 18 18 O 1.21287 * 120.00006 * 359.97438 * 17 16 3 19 19 C 1.50692 * 120.00397 * 179.97438 * 17 16 3 20 20 S 1.81002 * 109.47361 * 179.97438 * 19 17 16 21 21 C 1.76204 * 100.00269 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99473 * 0.02562 * 21 20 19 23 23 C 1.38788 * 120.00212 * 179.97438 * 21 20 19 24 24 N 1.31638 * 120.00185 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00271 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46693 * 60.00457 * 25 23 21 27 27 H 1.48501 * 109.47420 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47039 * 300.00674 * 25 23 21 29 29 H 1.08995 * 109.47319 * 59.99681 * 1 2 3 30 30 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46778 * 299.99815 * 1 2 3 32 32 H 1.08998 * 109.46778 * 240.00185 * 2 1 3 33 33 H 1.08995 * 109.47319 * 120.00319 * 2 1 3 34 34 H 1.09009 * 109.46730 * 64.99908 * 5 3 2 35 35 H 1.08998 * 109.46846 * 305.00453 * 5 3 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 3 37 37 H 1.09000 * 117.50770 * 359.97438 * 11 9 7 38 38 H 1.08993 * 117.51137 * 145.10281 * 11 9 7 39 39 H 1.09004 * 113.64556 * 309.38978 * 13 12 9 40 40 H 1.09006 * 113.65017 * 80.38541 * 13 12 9 41 41 H 1.08999 * 113.58863 * 270.39125 * 14 13 12 42 42 H 1.08995 * 113.65985 * 139.58202 * 14 13 12 43 43 H 1.08995 * 113.65121 * 279.61532 * 15 12 9 44 44 H 1.09006 * 113.64363 * 50.52793 * 15 12 9 45 45 H 0.97000 * 120.00254 * 94.99110 * 16 3 2 46 46 H 1.09004 * 109.46942 * 299.99496 * 19 17 16 47 47 H 1.09002 * 109.47526 * 59.99806 * 19 17 16 48 48 H 0.96996 * 119.99660 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3853 3.0636 -0.0920 8 8 6.1630 2.1488 -0.2635 9 6 5.8972 4.4761 0.0250 10 1 5.3432 5.1222 0.7058 11 6 6.4966 5.1175 -1.2296 12 6 7.4030 4.6904 -0.0800 13 6 8.5200 3.6410 -0.0823 14 6 9.4958 4.8012 0.1821 15 6 8.3080 5.5616 0.7979 16 7 1.6526 2.0975 1.2518 17 6 0.4353 2.6643 1.3671 18 8 -0.3393 2.6326 0.4343 19 6 0.0364 3.3376 2.6549 20 16 -1.6420 3.9964 2.4968 21 6 -1.8442 4.7061 4.0968 22 1 -1.0442 4.6447 4.8198 23 6 -3.0310 5.3450 4.4277 24 7 -4.0059 5.4203 3.5463 25 14 -3.2457 6.0967 6.1243 26 1 -2.2068 7.1357 6.3403 27 1 -4.5925 6.7143 6.2254 28 1 -3.1086 5.0375 7.1560 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0377 -1.0962 35 1 3.9954 0.8310 0.6658 36 1 3.4410 3.5483 0.1308 37 1 6.5208 4.5174 -2.1393 38 1 6.3365 6.1859 -1.3744 39 1 8.4533 2.9296 0.7408 40 1 8.6653 3.1592 -1.0493 41 1 9.8837 5.2607 -0.7270 42 1 10.2787 4.5591 0.9008 43 1 8.2834 6.6195 0.5367 44 1 8.1812 5.3859 1.8662 45 1 2.2720 2.1230 1.9978 46 1 0.0675 2.6128 3.4685 47 1 0.7278 4.1529 2.8680 48 1 -4.8355 5.8665 3.7778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356887437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -37.609262 kcal Electronic energy + Delta-G solvation = -26833.534166 eV Core-core repulsion = 23015.860824 eV Total energy + Delta-G solvation = -3817.673342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68299 -39.77264 -38.62266 -36.44805 -34.10113 -33.85984 -32.47534 -32.43933 -29.54406 -28.34262 -25.97195 -25.52866 -24.88148 -23.39313 -22.74889 -21.51106 -20.42561 -20.30576 -18.72954 -17.90739 -17.39514 -16.71280 -16.51121 -15.90842 -15.56841 -15.51184 -15.25293 -15.00963 -14.83627 -14.44045 -14.23209 -13.61544 -13.48571 -13.27250 -13.13608 -12.93370 -12.63662 -12.53305 -12.40521 -12.24703 -11.87426 -11.78053 -11.76158 -11.48326 -11.23116 -11.07372 -11.06758 -10.82359 -10.77799 -10.66675 -10.41185 -10.13289 -9.88373 -9.85722 -9.46664 -9.30842 -9.09690 -8.93686 -8.28821 -6.54108 -6.25230 -3.96113 2.26805 2.79375 2.97254 3.03049 3.20724 3.24961 3.27906 3.43128 3.65302 4.05195 4.17079 4.28807 4.38481 4.41860 4.47445 4.56865 4.78609 4.86570 4.99921 5.05690 5.09759 5.10226 5.21621 5.24613 5.34790 5.39467 5.41598 5.44052 5.50780 5.57246 5.59325 5.62408 5.76262 5.81716 5.83130 5.86509 5.99389 6.02582 6.08580 6.10398 6.15940 6.21431 6.54414 6.60946 7.25202 7.55633 7.61703 8.00082 8.31303 8.53945 9.20214 10.82021 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.002398 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.831895 B =11673.718953 C =13730.206425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.114 3.886 6 N -0.726 5.726 7 C 0.545 3.455 8 O -0.538 6.538 9 C -0.182 4.182 10 H 0.124 0.876 11 C -0.121 4.121 12 C -0.126 4.126 13 C -0.082 4.082 14 C -0.143 4.143 15 C -0.100 4.100 16 N -0.736 5.736 17 C 0.533 3.467 18 O -0.508 6.508 19 C -0.155 4.155 20 S -0.057 6.057 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.444 -4.258 -7.584 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.010 4.010 6 N -0.378 5.378 7 C 0.331 3.669 8 O -0.415 6.415 9 C -0.203 4.203 10 H 0.142 0.858 11 C -0.158 4.158 12 C -0.126 4.126 13 C -0.119 4.119 14 C -0.180 4.180 15 C -0.137 4.137 16 N -0.391 5.391 17 C 0.319 3.681 18 O -0.382 6.382 19 C -0.306 4.306 20 S 0.169 5.831 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.241 0.759 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.503 -4.923 -9.320 24.849 hybrid contribution 0.485 0.875 2.700 2.879 sum 22.988 -4.048 -6.620 24.263 Atomic orbital electron populations 1.21805 0.93985 1.00735 1.03857 1.21878 0.97820 0.94960 1.02179 1.21242 0.92345 0.94711 0.88777 0.88645 1.21673 0.92765 0.83533 1.03060 1.45960 1.07571 1.09920 1.74368 1.19647 0.81880 0.89613 0.75728 1.90689 1.55911 1.46075 1.48781 1.22169 0.98154 0.95506 1.04483 0.85768 1.22809 1.00123 1.01185 0.91683 1.22309 0.88554 1.00832 1.00952 1.22320 0.91931 0.95003 1.02636 1.22814 0.96334 0.97839 1.01009 1.22518 0.94179 0.98190 0.98807 1.46121 1.17435 1.59469 1.16111 1.20262 0.80774 0.77467 0.89598 1.90724 1.50257 1.57151 1.40055 1.23548 1.07087 1.02814 0.97115 1.85378 1.06415 1.70893 1.20398 1.22820 1.03970 1.42224 0.99491 0.91027 1.24985 0.94839 0.95537 0.98173 1.70005 1.05040 1.40932 1.34288 0.86236 0.77546 0.79259 0.82530 1.19937 1.20795 1.19941 0.92002 0.93570 0.91735 0.91195 0.91716 0.90124 0.90866 0.75914 0.88067 0.87469 0.89461 0.91333 0.90161 0.91232 0.91165 0.89528 0.76798 0.89331 0.89357 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.52 37.16 0.32 -1.62 16 2 C -0.13 -1.31 5.61 -26.73 -0.15 -1.46 16 3 C 0.13 1.38 2.42 -67.93 -0.16 1.22 16 4 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 5 C 0.11 1.02 5.23 -4.04 -0.02 1.00 16 6 N -0.73 -6.65 5.39 -60.29 -0.32 -6.98 16 7 C 0.54 5.79 7.61 -10.99 -0.08 5.70 16 8 O -0.54 -7.28 15.14 5.55 0.08 -7.19 16 9 C -0.18 -1.58 6.19 -91.98 -0.57 -2.15 16 10 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.12 -0.92 10.24 -26.91 -0.28 -1.20 16 12 C -0.13 -1.06 2.88 -154.77 -0.45 -1.50 16 13 C -0.08 -0.72 6.47 -26.14 -0.17 -0.89 16 14 C -0.14 -0.97 8.08 -25.81 -0.21 -1.18 16 15 C -0.10 -0.70 8.10 -26.14 -0.21 -0.91 16 16 N -0.74 -8.47 4.47 -53.81 -0.24 -8.71 16 17 C 0.53 8.80 6.42 -10.99 -0.07 8.73 16 18 O -0.51 -10.18 13.00 5.55 0.07 -10.11 16 19 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 20 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 21 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 22 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 25 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.03 5.65 -51.93 -0.29 0.74 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 3.48 8.14 -40.82 -0.33 3.14 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 46 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 47 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -33.62 405.68 -10.51 -44.13 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.08 Total: 4.98 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.63 Total: -9.60 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.17 Total: -40.65 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.16 Total: -17.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.62 -10.51 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356887437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.522 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds