Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 H 1.09000 * 109.47321 * 304.99972 * 3 2 1 5 5 C 1.53004 * 109.47023 * 185.00191 * 3 2 1 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 3 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 H 1.08993 * 115.56397 * 34.25975 * 9 7 6 11 11 C 1.53131 * 117.51214 * 248.45829 * 9 7 6 12 12 C 1.52460 * 117.51112 * 179.97438 * 9 7 6 13 13 C 1.53255 * 128.58796 * 349.84747 * 12 9 7 14 14 C 1.53887 * 86.88729 * 194.88865 * 13 12 9 15 15 C 1.53254 * 128.58610 * 225.04282 * 12 9 7 16 16 N 1.46494 * 109.47389 * 65.00406 * 3 2 1 17 17 C 1.34776 * 120.00207 * 275.00150 * 16 3 2 18 18 O 1.21287 * 120.00006 * 359.97438 * 17 16 3 19 19 C 1.50692 * 120.00397 * 179.97438 * 17 16 3 20 20 S 1.81002 * 109.47361 * 179.97438 * 19 17 16 21 21 C 1.76204 * 100.00269 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99473 * 0.02562 * 21 20 19 23 23 C 1.38788 * 120.00212 * 179.97438 * 21 20 19 24 24 N 1.31638 * 120.00185 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00271 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46693 * 60.00457 * 25 23 21 27 27 H 1.48501 * 109.47420 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47039 * 300.00674 * 25 23 21 29 29 H 1.08995 * 109.47319 * 59.99681 * 1 2 3 30 30 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46778 * 299.99815 * 1 2 3 32 32 H 1.08998 * 109.46778 * 240.00185 * 2 1 3 33 33 H 1.08995 * 109.47319 * 120.00319 * 2 1 3 34 34 H 1.09009 * 109.46730 * 64.99908 * 5 3 2 35 35 H 1.08998 * 109.46846 * 305.00453 * 5 3 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 3 37 37 H 1.09000 * 117.50770 * 359.97438 * 11 9 7 38 38 H 1.08993 * 117.51137 * 145.10281 * 11 9 7 39 39 H 1.09004 * 113.64556 * 309.38978 * 13 12 9 40 40 H 1.09006 * 113.65017 * 80.38541 * 13 12 9 41 41 H 1.08999 * 113.58863 * 270.39125 * 14 13 12 42 42 H 1.08995 * 113.65985 * 139.58202 * 14 13 12 43 43 H 1.08995 * 113.65121 * 279.61532 * 15 12 9 44 44 H 1.09006 * 113.64363 * 50.52793 * 15 12 9 45 45 H 0.97000 * 120.00254 * 94.99110 * 16 3 2 46 46 H 1.09004 * 109.46942 * 299.99496 * 19 17 16 47 47 H 1.09002 * 109.47526 * 59.99806 * 19 17 16 48 48 H 0.96996 * 119.99660 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3853 3.0636 -0.0920 8 8 6.1630 2.1488 -0.2635 9 6 5.8972 4.4761 0.0250 10 1 5.3432 5.1222 0.7058 11 6 6.4966 5.1175 -1.2296 12 6 7.4030 4.6904 -0.0800 13 6 8.5200 3.6410 -0.0823 14 6 9.4958 4.8012 0.1821 15 6 8.3080 5.5616 0.7979 16 7 1.6526 2.0975 1.2518 17 6 0.4353 2.6643 1.3671 18 8 -0.3393 2.6326 0.4343 19 6 0.0364 3.3376 2.6549 20 16 -1.6420 3.9964 2.4968 21 6 -1.8442 4.7061 4.0968 22 1 -1.0442 4.6447 4.8198 23 6 -3.0310 5.3450 4.4277 24 7 -4.0059 5.4203 3.5463 25 14 -3.2457 6.0967 6.1243 26 1 -2.2068 7.1357 6.3403 27 1 -4.5925 6.7143 6.2254 28 1 -3.1086 5.0375 7.1560 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0377 -1.0962 35 1 3.9954 0.8310 0.6658 36 1 3.4410 3.5483 0.1308 37 1 6.5208 4.5174 -2.1393 38 1 6.3365 6.1859 -1.3744 39 1 8.4533 2.9296 0.7408 40 1 8.6653 3.1592 -1.0493 41 1 9.8837 5.2607 -0.7270 42 1 10.2787 4.5591 0.9008 43 1 8.2834 6.6195 0.5367 44 1 8.1812 5.3859 1.8662 45 1 2.2720 2.1230 1.9978 46 1 0.0675 2.6128 3.4685 47 1 0.7278 4.1529 2.8680 48 1 -4.8355 5.8665 3.7778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356887437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -59.410108 kcal Electronic energy + Delta-G solvation = -26834.479521 eV Core-core repulsion = 23015.860824 eV Total energy + Delta-G solvation = -3818.618698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47122 -40.88622 -39.41921 -37.51108 -34.96955 -34.57736 -34.53740 -33.60315 -30.79415 -29.45326 -27.64183 -26.57879 -25.71657 -23.96713 -23.53580 -22.56112 -21.58373 -21.10960 -19.83575 -19.33476 -18.23602 -17.94191 -17.45679 -16.95749 -16.86704 -16.60441 -16.30297 -16.08320 -15.90764 -15.72739 -15.25579 -14.90212 -14.61187 -14.59431 -14.26453 -13.96598 -13.64167 -13.50146 -13.22958 -13.15818 -13.05975 -12.90998 -12.84915 -12.64400 -12.50515 -12.43386 -12.32594 -12.15698 -11.78849 -11.71233 -11.29739 -11.12157 -11.02918 -10.84864 -10.83911 -10.60860 -10.25304 -10.14116 -10.04746 -8.63499 -8.33853 -6.10631 1.28040 1.43487 1.46939 1.48497 1.56973 1.67086 2.05318 2.26854 2.32755 2.78259 3.00265 3.33576 3.41614 3.53977 3.68170 3.78301 3.89428 3.96117 3.98753 4.01182 4.09223 4.15261 4.33294 4.38956 4.51009 4.52242 4.55587 4.60685 4.68000 4.79083 4.83169 4.86165 4.89995 4.92957 5.02293 5.05216 5.09682 5.16484 5.17623 5.36903 5.39978 5.42473 5.48208 5.51870 5.54289 6.20245 6.47041 6.51573 7.07891 7.20226 7.29269 8.74710 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.002398 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.831895 B =11673.718953 C =13730.206425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.081 0.919 5 C 0.123 3.877 6 N -0.720 5.720 7 C 0.542 3.458 8 O -0.571 6.571 9 C -0.190 4.190 10 H 0.139 0.861 11 C -0.112 4.112 12 C -0.136 4.136 13 C -0.089 4.089 14 C -0.135 4.135 15 C -0.094 4.094 16 N -0.711 5.711 17 C 0.539 3.461 18 O -0.547 6.547 19 C -0.132 4.132 20 S -0.144 6.144 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.410 0.590 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.413 0.587 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.585 -3.878 -6.400 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.099 0.901 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.330 3.670 8 O -0.450 6.450 9 C -0.211 4.211 10 H 0.157 0.843 11 C -0.150 4.150 12 C -0.137 4.137 13 C -0.127 4.127 14 C -0.172 4.172 15 C -0.131 4.131 16 N -0.366 5.366 17 C 0.325 3.675 18 O -0.424 6.424 19 C -0.284 4.284 20 S 0.083 5.917 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.249 0.751 46 H 0.121 0.879 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.683 -4.555 -8.125 26.382 hybrid contribution -0.100 0.650 2.254 2.348 sum 24.583 -3.905 -5.871 25.574 Atomic orbital electron populations 1.21736 0.96346 1.00656 1.01363 1.21858 0.95423 0.94911 1.04078 1.21253 0.93179 0.94596 0.87253 0.90125 1.21594 0.91238 0.83626 1.03648 1.45938 1.07341 1.10152 1.73734 1.19988 0.81870 0.90128 0.75010 1.90678 1.56698 1.47195 1.50438 1.22236 0.98570 0.94623 1.05631 0.84319 1.22882 0.99063 1.02088 0.90935 1.22472 0.88358 1.01049 1.01786 1.22294 0.93634 0.95457 1.01302 1.22801 0.96239 0.96581 1.01560 1.22517 0.93376 0.98647 0.98601 1.45825 1.15749 1.57801 1.17185 1.19852 0.81829 0.77581 0.88220 1.90726 1.51810 1.58884 1.41007 1.23392 1.02279 1.03675 0.99017 1.85522 1.13030 1.71941 1.21165 1.23172 1.04468 1.42075 0.99772 0.90101 1.26081 0.94411 0.95949 1.02631 1.70170 1.05686 1.42108 1.36729 0.85057 0.77729 0.78597 0.76956 1.18615 1.20497 1.18844 0.93907 0.92422 0.94802 0.88816 0.90277 0.89609 0.90141 0.75409 0.88795 0.85492 0.91042 0.92685 0.89341 0.90460 0.89894 0.89402 0.75060 0.87877 0.87307 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.52 71.98 0.61 -3.13 16 2 C -0.12 -2.26 5.61 30.60 0.17 -2.08 16 3 C 0.14 2.67 2.42 44.99 0.11 2.78 16 4 H 0.08 1.85 7.58 -2.39 -0.02 1.84 16 5 C 0.12 1.94 5.23 86.38 0.45 2.39 16 6 N -0.72 -11.90 5.39 -463.05 -2.49 -14.40 16 7 C 0.54 10.83 7.61 87.66 0.67 11.49 16 8 O -0.57 -15.07 15.14 -3.04 -0.05 -15.11 16 9 C -0.19 -2.98 6.19 -11.68 -0.07 -3.06 16 10 H 0.14 1.74 8.14 -2.39 -0.02 1.73 16 11 C -0.11 -1.53 10.24 30.48 0.31 -1.22 16 12 C -0.14 -2.10 2.88 -52.35 -0.15 -2.25 16 13 C -0.09 -1.56 6.47 30.98 0.20 -1.35 16 14 C -0.13 -1.63 8.08 31.19 0.25 -1.38 16 15 C -0.09 -1.12 8.10 30.98 0.25 -0.87 16 16 N -0.71 -15.09 4.47 -442.55 -1.98 -17.07 16 17 C 0.54 17.51 6.42 87.65 0.56 18.07 16 18 O -0.55 -22.37 13.00 -3.05 -0.04 -22.41 16 19 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 20 S -0.14 -7.65 20.57 -56.49 -1.16 -8.81 16 21 C -0.55 -30.47 9.50 67.95 0.65 -29.82 16 22 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 23 C 0.01 0.79 5.49 84.85 0.47 1.26 16 24 N -0.91 -55.07 13.22 21.65 0.29 -54.78 16 25 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 29 H 0.04 1.25 7.85 -2.39 -0.02 1.24 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.08 5.65 -2.39 -0.01 1.07 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 6.23 8.14 -92.71 -0.75 5.47 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.44 8.05 -2.38 -0.02 1.42 16 40 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 45 H 0.41 6.65 8.60 -92.71 -0.80 5.85 16 46 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 48 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -75.58 405.68 0.92 -74.65 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.59 Total: 26.65 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.92 Total: -13.61 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -4.19 Total: -86.25 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.09 Total: -37.52 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.16 Total: -8.81 kcal Total: -75.58 0.92 -74.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356887437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.244 kcal (2) G-P(sol) polarization free energy of solvation -75.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds