Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.09001 * 109.47066 * 55.00046 * 3 2 1 5 5 C 1.53002 * 109.47405 * 174.99915 * 3 2 1 6 6 N 1.46494 * 109.47228 * 174.99645 * 5 3 2 7 7 C 1.34775 * 119.99813 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00217 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99891 * 180.02562 * 7 6 5 10 10 H 1.08999 * 115.56046 * 325.58280 * 9 7 6 11 11 C 1.53117 * 117.51318 * 111.32195 * 9 7 6 12 12 C 1.52460 * 117.51213 * 179.84746 * 9 7 6 13 13 C 1.53263 * 128.58266 * 134.94891 * 12 9 7 14 14 C 1.53887 * 86.88199 * 194.88981 * 13 12 9 15 15 C 1.53252 * 128.58530 * 10.15356 * 12 9 7 16 16 N 1.46496 * 109.47084 * 295.00009 * 3 2 1 17 17 C 1.34777 * 120.00271 * 84.99619 * 16 3 2 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 3 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 3 20 20 S 1.81002 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00092 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00019 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99810 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00234 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99664 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47405 * 90.00153 * 25 23 21 27 27 H 1.48505 * 109.47032 * 209.99913 * 25 23 21 28 28 H 1.48497 * 109.47409 * 329.99921 * 25 23 21 29 29 H 1.08998 * 109.46755 * 59.99787 * 1 2 3 30 30 H 1.08995 * 109.47658 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46863 * 300.00595 * 1 2 3 32 32 H 1.09001 * 109.46863 * 239.99405 * 2 1 3 33 33 H 1.09010 * 109.46933 * 119.99789 * 2 1 3 34 34 H 1.08996 * 109.46886 * 295.00216 * 5 3 2 35 35 H 1.09005 * 109.46803 * 54.99338 * 5 3 2 36 36 H 0.96995 * 120.00299 * 0.02562 * 6 5 3 37 37 H 1.09001 * 117.51031 * 214.89898 * 11 9 7 38 38 H 1.09001 * 117.51502 * 0.02562 * 11 9 7 39 39 H 1.08999 * 113.64719 * 309.38906 * 13 12 9 40 40 H 1.09002 * 113.64256 * 80.39062 * 13 12 9 41 41 H 1.09001 * 113.59208 * 270.39485 * 14 13 12 42 42 H 1.09000 * 113.58730 * 139.57652 * 14 13 12 43 43 H 1.08996 * 113.65021 * 279.60465 * 15 12 9 44 44 H 1.09003 * 113.64825 * 50.52263 * 15 12 9 45 45 H 0.97005 * 120.00266 * 265.00202 * 16 3 2 46 46 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 47 47 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 48 48 H 0.97005 * 119.99806 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8166 0.0059 7 6 5.3858 3.0628 0.0868 8 8 6.1635 2.1482 0.2583 9 6 5.8983 4.4747 -0.0359 10 1 5.3440 5.1186 -0.7187 11 6 6.4976 5.1210 1.2161 12 6 7.4043 4.6888 0.0676 13 6 8.3092 5.5562 -0.8142 14 6 9.4969 4.7977 -0.1960 15 6 8.5207 3.6389 0.0734 16 7 1.6526 2.0974 -1.2518 17 6 0.4353 2.6643 -1.3670 18 8 -0.3391 2.6326 -0.4342 19 6 0.0364 3.3376 -2.6549 20 16 -1.6420 3.9965 -2.4967 21 6 -1.8442 4.7061 -4.0968 22 1 -1.0445 4.6439 -4.8201 23 6 -3.0315 5.3441 -4.4279 24 7 -4.0066 5.4186 -3.5469 25 14 -3.2461 6.0958 -6.1245 26 1 -3.8227 5.0833 -7.0452 27 1 -4.1604 7.2627 -6.0368 28 1 -1.9260 6.5390 -6.6402 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.8499 1.0376 1.0960 35 1 3.9955 0.8309 -0.6659 36 1 3.4412 3.5482 -0.1309 37 1 6.3378 6.1901 1.3565 38 1 6.5214 4.5247 2.1283 39 1 8.1829 5.3753 -1.8817 40 1 8.2851 6.6151 -0.5571 41 1 9.8855 5.2605 0.7112 42 1 10.2788 4.5514 -0.9144 43 1 8.6663 3.1609 1.0421 44 1 8.4524 2.9235 -0.7461 45 1 2.2721 2.1230 -1.9978 46 1 0.0674 2.6129 -3.4685 47 1 0.7279 4.1528 -2.8680 48 1 -4.8363 5.8648 -3.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356887438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = -37.624093 kcal Electronic energy + Delta-G solvation = -26834.567729 eV Core-core repulsion = 23016.893744 eV Total energy + Delta-G solvation = -3817.673985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68147 -39.77274 -38.62229 -36.44908 -34.10201 -33.85912 -32.47751 -32.44022 -29.54389 -28.34253 -25.97138 -25.53082 -24.87969 -23.39299 -22.74844 -21.51096 -20.42596 -20.30490 -18.72962 -17.90870 -17.39512 -16.71273 -16.51130 -15.90870 -15.57000 -15.51277 -15.25287 -15.00827 -14.83805 -14.44102 -14.23390 -13.61542 -13.48534 -13.27340 -13.13674 -12.93406 -12.63561 -12.53450 -12.40536 -12.24737 -11.87529 -11.78109 -11.76024 -11.48324 -11.23068 -11.09114 -11.05750 -10.82050 -10.77463 -10.66706 -10.41000 -10.13266 -9.88221 -9.84951 -9.46714 -9.30876 -9.10566 -8.93728 -8.28498 -6.54219 -6.25566 -3.96258 2.26869 2.79409 2.97252 3.03052 3.19575 3.25233 3.28802 3.42949 3.65310 4.05263 4.16823 4.28712 4.38475 4.42018 4.47496 4.56820 4.78605 4.86548 4.99911 5.05767 5.09813 5.09983 5.21624 5.24597 5.34781 5.39482 5.41599 5.44029 5.50825 5.57195 5.59324 5.62409 5.76239 5.81684 5.83217 5.86473 5.99459 6.02578 6.08579 6.10465 6.15971 6.21397 6.54392 6.60911 7.25201 7.55794 7.61664 8.00088 8.31308 8.53936 9.20083 10.81740 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.002399 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.395016 B =11667.360519 C =13726.037981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.114 3.886 6 N -0.726 5.726 7 C 0.545 3.455 8 O -0.538 6.538 9 C -0.182 4.182 10 H 0.124 0.876 11 C -0.121 4.121 12 C -0.126 4.126 13 C -0.100 4.100 14 C -0.143 4.143 15 C -0.082 4.082 16 N -0.736 5.736 17 C 0.533 3.467 18 O -0.508 6.508 19 C -0.155 4.155 20 S -0.058 6.058 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.406 0.594 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.455 -4.262 7.560 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.010 4.010 6 N -0.378 5.378 7 C 0.331 3.669 8 O -0.415 6.415 9 C -0.203 4.203 10 H 0.142 0.858 11 C -0.158 4.158 12 C -0.126 4.126 13 C -0.137 4.137 14 C -0.180 4.180 15 C -0.119 4.119 16 N -0.391 5.391 17 C 0.319 3.681 18 O -0.382 6.382 19 C -0.306 4.306 20 S 0.169 5.831 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.241 0.759 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.519 -4.925 9.298 24.856 hybrid contribution 0.472 0.867 -2.699 2.874 sum 22.992 -4.058 6.600 24.262 Atomic orbital electron populations 1.21805 0.93985 1.00735 1.03857 1.21880 0.97819 0.94961 1.02178 1.21241 0.92345 0.94710 0.88777 0.88643 1.21670 0.92765 0.83533 1.03062 1.45957 1.07540 1.09927 1.74393 1.19648 0.81881 0.89608 0.75735 1.90688 1.55929 1.46057 1.48779 1.22171 0.98146 0.95505 1.04480 0.85769 1.22820 1.00132 1.01138 0.91725 1.22322 0.88552 1.00835 1.00940 1.22520 0.94176 0.98221 0.98771 1.22816 0.96339 0.97845 1.00995 1.22319 0.91940 0.95007 1.02637 1.46124 1.17438 1.59471 1.16111 1.20263 0.80773 0.77466 0.89598 1.90721 1.50263 1.57146 1.40050 1.23549 1.07082 1.02813 0.97112 1.85379 1.06415 1.70906 1.20419 1.22860 1.03963 1.42159 0.99461 0.90978 1.24986 0.94847 0.95553 0.98175 1.70012 1.05002 1.41021 1.34212 0.86177 0.78243 0.78678 0.82458 1.20265 1.20739 1.19702 0.91736 0.93569 0.92002 0.91717 0.91195 0.90121 0.90870 0.75915 0.87469 0.88069 0.89527 0.91156 0.90153 0.91233 0.91347 0.89453 0.76800 0.89333 0.89357 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.52 37.16 0.32 -1.62 16 2 C -0.13 -1.31 5.61 -26.73 -0.15 -1.46 16 3 C 0.13 1.38 2.42 -67.93 -0.16 1.22 16 4 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 5 C 0.11 1.02 5.23 -4.04 -0.02 1.00 16 6 N -0.73 -6.65 5.39 -60.30 -0.32 -6.98 16 7 C 0.54 5.79 7.61 -10.98 -0.08 5.70 16 8 O -0.54 -7.28 15.14 5.56 0.08 -7.19 16 9 C -0.18 -1.58 6.19 -91.98 -0.57 -2.15 16 10 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.12 -0.93 10.24 -26.88 -0.28 -1.20 16 12 C -0.13 -1.06 2.88 -154.73 -0.45 -1.51 16 13 C -0.10 -0.70 8.10 -26.13 -0.21 -0.91 16 14 C -0.14 -0.97 8.08 -25.81 -0.21 -1.18 16 15 C -0.08 -0.73 6.47 -26.14 -0.17 -0.90 16 16 N -0.74 -8.47 4.47 -53.81 -0.24 -8.71 16 17 C 0.53 8.80 6.42 -10.98 -0.07 8.73 16 18 O -0.51 -10.18 13.00 5.56 0.07 -10.11 16 19 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 20 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 21 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 22 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 25 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.06 1.03 5.65 -51.93 -0.29 0.74 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 3.48 8.14 -40.82 -0.33 3.14 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 45 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 46 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 47 H 0.09 1.53 8.14 -51.91 -0.42 1.10 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -33.64 405.67 -10.51 -44.15 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.08 Total: 4.94 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.63 Total: -9.59 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.17 Total: -40.64 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.16 Total: -17.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.64 -10.51 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356887438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.526 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds