Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.09001 * 109.47066 * 55.00046 * 3 2 1 5 5 C 1.53002 * 109.47405 * 174.99915 * 3 2 1 6 6 N 1.46494 * 109.47228 * 174.99645 * 5 3 2 7 7 C 1.34775 * 119.99813 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00217 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99891 * 180.02562 * 7 6 5 10 10 H 1.08999 * 115.56046 * 325.58280 * 9 7 6 11 11 C 1.53117 * 117.51318 * 111.32195 * 9 7 6 12 12 C 1.52460 * 117.51213 * 179.84746 * 9 7 6 13 13 C 1.53263 * 128.58266 * 134.94891 * 12 9 7 14 14 C 1.53887 * 86.88199 * 194.88981 * 13 12 9 15 15 C 1.53252 * 128.58530 * 10.15356 * 12 9 7 16 16 N 1.46496 * 109.47084 * 295.00009 * 3 2 1 17 17 C 1.34777 * 120.00271 * 84.99619 * 16 3 2 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 3 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 3 20 20 S 1.81002 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00092 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00019 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99810 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00234 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99664 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47405 * 90.00153 * 25 23 21 27 27 H 1.48505 * 109.47032 * 209.99913 * 25 23 21 28 28 H 1.48497 * 109.47409 * 329.99921 * 25 23 21 29 29 H 1.08998 * 109.46755 * 59.99787 * 1 2 3 30 30 H 1.08995 * 109.47658 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46863 * 300.00595 * 1 2 3 32 32 H 1.09001 * 109.46863 * 239.99405 * 2 1 3 33 33 H 1.09010 * 109.46933 * 119.99789 * 2 1 3 34 34 H 1.08996 * 109.46886 * 295.00216 * 5 3 2 35 35 H 1.09005 * 109.46803 * 54.99338 * 5 3 2 36 36 H 0.96995 * 120.00299 * 0.02562 * 6 5 3 37 37 H 1.09001 * 117.51031 * 214.89898 * 11 9 7 38 38 H 1.09001 * 117.51502 * 0.02562 * 11 9 7 39 39 H 1.08999 * 113.64719 * 309.38906 * 13 12 9 40 40 H 1.09002 * 113.64256 * 80.39062 * 13 12 9 41 41 H 1.09001 * 113.59208 * 270.39485 * 14 13 12 42 42 H 1.09000 * 113.58730 * 139.57652 * 14 13 12 43 43 H 1.08996 * 113.65021 * 279.60465 * 15 12 9 44 44 H 1.09003 * 113.64825 * 50.52263 * 15 12 9 45 45 H 0.97005 * 120.00266 * 265.00202 * 16 3 2 46 46 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 47 47 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 48 48 H 0.97005 * 119.99806 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8166 0.0059 7 6 5.3858 3.0628 0.0868 8 8 6.1635 2.1482 0.2583 9 6 5.8983 4.4747 -0.0359 10 1 5.3440 5.1186 -0.7187 11 6 6.4976 5.1210 1.2161 12 6 7.4043 4.6888 0.0676 13 6 8.3092 5.5562 -0.8142 14 6 9.4969 4.7977 -0.1960 15 6 8.5207 3.6389 0.0734 16 7 1.6526 2.0974 -1.2518 17 6 0.4353 2.6643 -1.3670 18 8 -0.3391 2.6326 -0.4342 19 6 0.0364 3.3376 -2.6549 20 16 -1.6420 3.9965 -2.4967 21 6 -1.8442 4.7061 -4.0968 22 1 -1.0445 4.6439 -4.8201 23 6 -3.0315 5.3441 -4.4279 24 7 -4.0066 5.4186 -3.5469 25 14 -3.2461 6.0958 -6.1245 26 1 -3.8227 5.0833 -7.0452 27 1 -4.1604 7.2627 -6.0368 28 1 -1.9260 6.5390 -6.6402 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.8499 1.0376 1.0960 35 1 3.9955 0.8309 -0.6659 36 1 3.4412 3.5482 -0.1309 37 1 6.3378 6.1901 1.3565 38 1 6.5214 4.5247 2.1283 39 1 8.1829 5.3753 -1.8817 40 1 8.2851 6.6151 -0.5571 41 1 9.8855 5.2605 0.7112 42 1 10.2788 4.5514 -0.9144 43 1 8.6663 3.1609 1.0421 44 1 8.4524 2.9235 -0.7461 45 1 2.2721 2.1230 -1.9978 46 1 0.0674 2.6129 -3.4685 47 1 0.7279 4.1528 -2.8680 48 1 -4.8363 5.8648 -3.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356887438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = -59.439312 kcal Electronic energy + Delta-G solvation = -26835.513708 eV Core-core repulsion = 23016.893744 eV Total energy + Delta-G solvation = -3818.619964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47048 -40.88605 -39.41837 -37.51188 -34.97051 -34.57999 -34.53701 -33.60284 -30.79387 -29.45318 -27.64443 -26.57835 -25.71474 -23.96708 -23.53509 -22.56092 -21.58370 -21.10889 -19.83767 -19.33500 -18.23583 -17.94235 -17.45649 -16.95782 -16.86975 -16.60500 -16.30423 -16.08380 -15.90919 -15.72528 -15.25625 -14.90179 -14.61227 -14.59739 -14.26395 -13.96698 -13.64187 -13.50178 -13.22820 -13.15448 -13.06130 -12.92101 -12.86581 -12.62830 -12.50320 -12.43406 -12.32444 -12.15442 -11.78780 -11.69750 -11.29770 -11.13760 -11.02737 -10.84873 -10.83934 -10.60668 -10.25006 -10.14185 -10.04735 -8.63568 -8.34176 -6.10747 1.28174 1.42051 1.47143 1.48712 1.57766 1.67127 2.05341 2.26613 2.32673 2.78093 3.00140 3.33504 3.41672 3.53975 3.68045 3.78467 3.89494 3.96054 3.98730 4.01174 4.09197 4.15273 4.33279 4.38938 4.51069 4.52253 4.55590 4.60724 4.68037 4.79102 4.83150 4.86177 4.90041 4.92939 5.02310 5.05208 5.09652 5.16533 5.17615 5.36942 5.40022 5.42668 5.48192 5.51943 5.54279 6.20312 6.47039 6.51545 7.07779 7.20236 7.29267 8.74642 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.002399 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.395016 B =11667.360519 C =13726.037981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.081 0.919 5 C 0.123 3.877 6 N -0.720 5.720 7 C 0.542 3.458 8 O -0.571 6.571 9 C -0.190 4.190 10 H 0.139 0.861 11 C -0.113 4.113 12 C -0.136 4.136 13 C -0.094 4.094 14 C -0.134 4.134 15 C -0.090 4.090 16 N -0.711 5.711 17 C 0.539 3.461 18 O -0.547 6.547 19 C -0.132 4.132 20 S -0.144 6.144 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.258 1.258 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.410 0.590 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.413 0.587 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.592 -3.884 6.378 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.099 0.901 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.330 3.670 8 O -0.450 6.450 9 C -0.210 4.210 10 H 0.157 0.843 11 C -0.150 4.150 12 C -0.137 4.137 13 C -0.131 4.131 14 C -0.172 4.172 15 C -0.127 4.127 16 N -0.366 5.366 17 C 0.325 3.675 18 O -0.424 6.424 19 C -0.284 4.284 20 S 0.083 5.917 21 C -0.694 4.694 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.182 1.182 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.145 0.855 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.249 0.751 46 H 0.121 0.879 47 H 0.127 0.873 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.695 -4.559 8.106 26.388 hybrid contribution -0.113 0.643 -2.254 2.346 sum 24.582 -3.916 5.852 25.571 Atomic orbital electron populations 1.21736 0.96345 1.00656 1.01364 1.21860 0.95423 0.94912 1.04077 1.21253 0.93179 0.94596 0.87253 0.90124 1.21591 0.91239 0.83626 1.03649 1.45935 1.07311 1.10158 1.73759 1.19990 0.81871 0.90121 0.75017 1.90677 1.56715 1.47179 1.50436 1.22237 0.98560 0.94623 1.05626 0.84318 1.22892 0.99068 1.02043 0.90976 1.22486 0.88357 1.01050 1.01778 1.22518 0.93372 0.98685 0.98559 1.22803 0.96242 0.96592 1.01540 1.22293 0.93646 0.95457 1.01303 1.45828 1.15752 1.57804 1.17184 1.19852 0.81828 0.77580 0.88220 1.90723 1.51815 1.58879 1.41001 1.23393 1.02275 1.03673 0.99019 1.85523 1.13025 1.71950 1.21178 1.23202 1.04443 1.42018 0.99728 0.90108 1.26081 0.94422 0.95970 1.02626 1.70174 1.05670 1.42187 1.36666 0.84999 0.78721 0.77720 0.76838 1.19499 1.20359 1.18195 0.94802 0.92421 0.93907 0.90278 0.88816 0.89606 0.90147 0.75410 0.85490 0.88795 0.89404 0.89881 0.89331 0.90463 0.92700 0.91040 0.75062 0.87871 0.87318 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.52 71.98 0.61 -3.13 16 2 C -0.12 -2.26 5.61 30.59 0.17 -2.08 16 3 C 0.14 2.67 2.42 44.99 0.11 2.78 16 4 H 0.08 1.85 7.58 -2.39 -0.02 1.84 16 5 C 0.12 1.94 5.23 86.38 0.45 2.39 16 6 N -0.72 -11.90 5.39 -463.07 -2.49 -14.40 16 7 C 0.54 10.83 7.61 87.66 0.67 11.49 16 8 O -0.57 -15.07 15.14 -3.03 -0.05 -15.11 16 9 C -0.19 -2.98 6.19 -11.68 -0.07 -3.05 16 10 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 11 C -0.11 -1.53 10.24 30.49 0.31 -1.22 16 12 C -0.14 -2.10 2.88 -52.33 -0.15 -2.25 16 13 C -0.09 -1.12 8.10 30.98 0.25 -0.87 16 14 C -0.13 -1.63 8.08 31.19 0.25 -1.38 16 15 C -0.09 -1.56 6.47 30.98 0.20 -1.36 16 16 N -0.71 -15.09 4.47 -442.54 -1.98 -17.07 16 17 C 0.54 17.51 6.42 87.66 0.56 18.07 16 18 O -0.55 -22.36 13.00 -3.02 -0.04 -22.40 16 19 C -0.13 -4.86 6.16 71.24 0.44 -4.43 16 20 S -0.14 -7.66 20.57 -56.49 -1.16 -8.82 16 21 C -0.55 -30.41 9.50 67.95 0.65 -29.76 16 22 H 0.08 4.19 7.80 -2.91 -0.02 4.16 16 23 C 0.01 0.77 5.49 84.86 0.47 1.24 16 24 N -0.91 -55.04 13.22 21.65 0.29 -54.76 16 25 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 29 H 0.03 1.08 5.65 -2.39 -0.01 1.07 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.25 7.85 -2.39 -0.02 1.24 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.41 6.23 8.14 -92.71 -0.75 5.47 16 37 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 45 H 0.41 6.65 8.60 -92.70 -0.80 5.85 16 46 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 48 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -75.60 405.67 0.93 -74.68 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.59 Total: 26.53 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.92 Total: -13.57 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -4.19 Total: -86.22 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.09 Total: -37.52 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Total: -75.60 0.93 -74.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356887438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.237 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds