Wall clock time and date at job start Sat Apr 11 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 H 1.09000 * 109.47260 * 55.00052 * 3 2 1 5 5 C 1.52995 * 109.47355 * 175.00339 * 3 2 1 6 6 N 1.46498 * 109.47361 * 175.00069 * 5 3 2 7 7 C 1.34776 * 120.00485 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99914 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00653 * 180.02562 * 7 6 5 10 10 H 1.09001 * 115.55840 * 34.26254 * 9 7 6 11 11 C 1.53127 * 117.51097 * 248.46559 * 9 7 6 12 12 C 1.52461 * 117.51749 * 180.02562 * 9 7 6 13 13 C 1.53258 * 128.58279 * 349.84498 * 12 9 7 14 14 C 1.53883 * 86.88221 * 194.88706 * 13 12 9 15 15 C 1.53255 * 128.58426 * 225.04532 * 12 9 7 16 16 N 1.46504 * 109.47176 * 295.00006 * 3 2 1 17 17 C 1.34775 * 119.99561 * 84.99647 * 16 3 2 18 18 O 1.21282 * 120.00577 * 0.02562 * 17 16 3 19 19 C 1.50703 * 119.99768 * 179.97438 * 17 16 3 20 20 S 1.81002 * 109.47349 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00182 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00065 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46755 * 90.00066 * 25 23 21 27 27 H 1.48495 * 109.46931 * 210.00080 * 25 23 21 28 28 H 1.48500 * 109.46738 * 330.00322 * 25 23 21 29 29 H 1.08999 * 109.46690 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46929 * 299.99462 * 1 2 3 31 31 H 1.09000 * 109.47482 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47483 * 240.00019 * 2 1 3 33 33 H 1.09000 * 109.47482 * 120.00086 * 2 1 3 34 34 H 1.09000 * 109.47182 * 294.99694 * 5 3 2 35 35 H 1.09001 * 109.47534 * 55.00035 * 5 3 2 36 36 H 0.97001 * 120.00081 * 359.97438 * 6 5 3 37 37 H 1.08991 * 117.51440 * 359.97438 * 11 9 7 38 38 H 1.09001 * 117.51343 * 145.09929 * 11 9 7 39 39 H 1.08998 * 113.64937 * 309.38973 * 13 12 9 40 40 H 1.09000 * 113.64553 * 80.39373 * 13 12 9 41 41 H 1.08996 * 113.59509 * 270.39342 * 14 13 12 42 42 H 1.09005 * 113.66185 * 139.58213 * 14 13 12 43 43 H 1.08995 * 113.64813 * 279.61112 * 15 12 9 44 44 H 1.09004 * 113.64138 * 50.52670 * 15 12 9 45 45 H 0.96993 * 120.00065 * 264.99905 * 16 3 2 46 46 H 1.09005 * 109.46867 * 60.00428 * 19 17 16 47 47 H 1.09000 * 109.47235 * 300.00468 * 19 17 16 48 48 H 0.97005 * 119.99878 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1256 6 7 4.0629 2.8169 0.0059 7 6 5.3855 3.0633 0.0867 8 8 6.1634 2.1486 0.2581 9 6 5.8980 4.4751 -0.0359 10 1 5.2511 5.2479 0.3794 11 6 6.7091 4.8271 -1.2861 12 6 7.4042 4.6888 0.0633 13 6 8.4861 3.6876 0.4828 14 6 9.4267 4.8959 0.6352 15 6 8.1683 5.7532 0.8584 16 7 1.6524 2.0975 -1.2518 17 6 0.4350 2.6643 -1.3669 18 8 -0.3394 2.6326 -0.4341 19 6 0.0365 3.3386 -2.6544 20 16 -1.6420 3.9971 -2.4962 21 6 -1.8438 4.7081 -4.0958 22 1 -1.0440 4.6466 -4.8188 23 6 -3.0312 5.3462 -4.4269 24 7 -4.0062 5.4206 -3.5457 25 14 -3.2449 6.1005 -6.1224 26 1 -3.8204 5.0892 -7.0450 27 1 -4.1596 7.2669 -6.0334 28 1 -1.9244 6.5450 -6.6363 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 1.0959 35 1 3.9954 0.8313 -0.6660 36 1 3.4409 3.5484 -0.1316 37 1 6.8723 4.0373 -2.0193 38 1 6.5958 5.8317 -1.6935 39 1 8.2709 3.1797 1.4229 40 1 8.7798 3.0026 -0.3125 41 1 9.9680 5.1453 -0.2774 42 1 10.0755 4.8378 1.5092 43 1 8.2072 6.7239 0.3643 44 1 7.8635 5.8212 1.9028 45 1 2.2718 2.1232 -1.9977 46 1 0.0679 2.6145 -3.4686 47 1 0.7279 4.1541 -2.8666 48 1 -4.8359 5.8669 -3.7770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356887439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:45 Heat of formation + Delta-G solvation = -37.677286 kcal Electronic energy + Delta-G solvation = -26846.128459 eV Core-core repulsion = 23028.452167 eV Total energy + Delta-G solvation = -3817.676292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68447 -39.77262 -38.62394 -36.44785 -34.09998 -33.86074 -32.47593 -32.43926 -29.54312 -28.34076 -25.97631 -25.52938 -24.88206 -23.38906 -22.74809 -21.51008 -20.43690 -20.29085 -18.72937 -17.91218 -17.37750 -16.73712 -16.50098 -15.94123 -15.52283 -15.51354 -15.31325 -14.87291 -14.83041 -14.56487 -14.19934 -13.63287 -13.52269 -13.20519 -13.08965 -12.98321 -12.64654 -12.54880 -12.37438 -12.25951 -11.86741 -11.81016 -11.73529 -11.48354 -11.23222 -11.09111 -11.05639 -10.82033 -10.77435 -10.66724 -10.41153 -10.13185 -9.88299 -9.84865 -9.46645 -9.30708 -9.10454 -8.93629 -8.28344 -6.54095 -6.25499 -3.96142 2.26998 2.79107 2.97637 3.03335 3.19591 3.25284 3.28909 3.43584 3.65280 4.05308 4.16898 4.28781 4.38557 4.42458 4.47310 4.56783 4.77169 4.87917 4.99745 5.05596 5.09891 5.10002 5.22058 5.24512 5.36054 5.39454 5.41490 5.44059 5.50169 5.57271 5.58789 5.63275 5.76323 5.81861 5.83283 5.86567 5.99201 6.02599 6.08812 6.10082 6.16003 6.21427 6.54448 6.60941 7.25243 7.55898 7.61920 8.00165 8.31406 8.54098 9.20126 10.81802 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.002385 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.298987 B =11736.800609 C =13785.053017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.095 0.905 5 C 0.114 3.886 6 N -0.726 5.726 7 C 0.545 3.455 8 O -0.538 6.538 9 C -0.182 4.182 10 H 0.124 0.876 11 C -0.120 4.120 12 C -0.126 4.126 13 C -0.082 4.082 14 C -0.143 4.143 15 C -0.100 4.100 16 N -0.736 5.736 17 C 0.533 3.467 18 O -0.508 6.508 19 C -0.155 4.155 20 S -0.058 6.058 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.473 -4.286 7.378 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.113 0.887 5 C -0.010 4.010 6 N -0.378 5.378 7 C 0.331 3.669 8 O -0.415 6.415 9 C -0.203 4.203 10 H 0.142 0.858 11 C -0.157 4.157 12 C -0.127 4.127 13 C -0.119 4.119 14 C -0.180 4.180 15 C -0.137 4.137 16 N -0.391 5.391 17 C 0.319 3.681 18 O -0.382 6.382 19 C -0.305 4.305 20 S 0.169 5.831 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.241 0.759 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.538 -4.948 9.123 24.813 hybrid contribution 0.469 0.876 -2.653 2.832 sum 23.008 -4.072 6.470 24.245 Atomic orbital electron populations 1.21804 0.93985 1.00735 1.03857 1.21878 0.97820 0.94958 1.02178 1.21243 0.92344 0.94714 0.88781 0.88653 1.21670 0.92763 0.83530 1.03064 1.45959 1.07577 1.09955 1.74330 1.19648 0.81886 0.89596 0.75740 1.90690 1.55936 1.46112 1.48728 1.22164 0.96035 0.95758 1.06368 0.85828 1.22797 0.99866 1.03304 0.89743 1.22295 0.90247 1.00429 0.99704 1.22318 0.92608 0.95047 1.01926 1.22815 0.96051 0.97181 1.01944 1.22517 0.94949 0.96491 0.99745 1.46120 1.17426 1.59469 1.16109 1.20263 0.80772 0.77465 0.89596 1.90722 1.50264 1.57168 1.40047 1.23549 1.07081 1.02807 0.97113 1.85380 1.06409 1.70873 1.20469 1.22861 1.03945 1.42134 0.99498 0.90973 1.24991 0.94852 0.95556 0.98173 1.70014 1.05009 1.41032 1.34192 0.86176 0.78241 0.78686 0.82453 1.20265 1.20740 1.19700 0.93571 0.92003 0.91731 0.91719 0.91194 0.90101 0.90890 0.75917 0.88025 0.87433 0.89487 0.91312 0.90137 0.91251 0.91156 0.89581 0.76793 0.89340 0.89336 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.51 37.15 0.32 -1.62 16 2 C -0.13 -1.31 5.61 -26.73 -0.15 -1.46 16 3 C 0.13 1.38 2.42 -67.93 -0.16 1.21 16 4 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 5 C 0.11 1.02 5.23 -4.05 -0.02 1.00 16 6 N -0.73 -6.65 5.39 -60.30 -0.32 -6.98 16 7 C 0.54 5.79 7.61 -10.99 -0.08 5.70 16 8 O -0.54 -7.28 15.14 5.55 0.08 -7.19 16 9 C -0.18 -1.58 6.19 -91.98 -0.57 -2.15 16 10 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 11 C -0.12 -0.93 10.23 -26.96 -0.28 -1.20 16 12 C -0.13 -1.06 2.87 -154.82 -0.44 -1.51 16 13 C -0.08 -0.72 6.47 -26.14 -0.17 -0.89 16 14 C -0.14 -0.97 8.08 -25.81 -0.21 -1.17 16 15 C -0.10 -0.69 8.10 -26.13 -0.21 -0.90 16 16 N -0.74 -8.45 4.47 -53.80 -0.24 -8.69 16 17 C 0.53 8.79 6.42 -10.98 -0.07 8.72 16 18 O -0.51 -10.18 13.00 5.56 0.07 -10.11 16 19 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 20 S -0.06 -1.50 20.57 -107.50 -2.21 -3.72 16 21 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 22 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.69 13.22 55.49 0.73 -24.95 16 25 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 31 H 0.06 1.03 5.65 -51.93 -0.29 0.74 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 3.48 8.14 -40.82 -0.33 3.14 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 46 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 47 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -33.63 405.67 -10.51 -44.14 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.08 Total: 4.94 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.63 Total: -9.57 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.17 Total: -40.63 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.16 Total: -17.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.63 -10.51 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356887439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.462 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds