Wall clock time and date at job start Sat Apr 11 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 H 1.09000 * 109.47260 * 55.00052 * 3 2 1 5 5 C 1.52995 * 109.47355 * 175.00339 * 3 2 1 6 6 N 1.46498 * 109.47361 * 175.00069 * 5 3 2 7 7 C 1.34776 * 120.00485 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99914 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00653 * 180.02562 * 7 6 5 10 10 H 1.09001 * 115.55840 * 34.26254 * 9 7 6 11 11 C 1.53127 * 117.51097 * 248.46559 * 9 7 6 12 12 C 1.52461 * 117.51749 * 180.02562 * 9 7 6 13 13 C 1.53258 * 128.58279 * 349.84498 * 12 9 7 14 14 C 1.53883 * 86.88221 * 194.88706 * 13 12 9 15 15 C 1.53255 * 128.58426 * 225.04532 * 12 9 7 16 16 N 1.46504 * 109.47176 * 295.00006 * 3 2 1 17 17 C 1.34775 * 119.99561 * 84.99647 * 16 3 2 18 18 O 1.21282 * 120.00577 * 0.02562 * 17 16 3 19 19 C 1.50703 * 119.99768 * 179.97438 * 17 16 3 20 20 S 1.81002 * 109.47349 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00182 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00065 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46755 * 90.00066 * 25 23 21 27 27 H 1.48495 * 109.46931 * 210.00080 * 25 23 21 28 28 H 1.48500 * 109.46738 * 330.00322 * 25 23 21 29 29 H 1.08999 * 109.46690 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46929 * 299.99462 * 1 2 3 31 31 H 1.09000 * 109.47482 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47483 * 240.00019 * 2 1 3 33 33 H 1.09000 * 109.47482 * 120.00086 * 2 1 3 34 34 H 1.09000 * 109.47182 * 294.99694 * 5 3 2 35 35 H 1.09001 * 109.47534 * 55.00035 * 5 3 2 36 36 H 0.97001 * 120.00081 * 359.97438 * 6 5 3 37 37 H 1.08991 * 117.51440 * 359.97438 * 11 9 7 38 38 H 1.09001 * 117.51343 * 145.09929 * 11 9 7 39 39 H 1.08998 * 113.64937 * 309.38973 * 13 12 9 40 40 H 1.09000 * 113.64553 * 80.39373 * 13 12 9 41 41 H 1.08996 * 113.59509 * 270.39342 * 14 13 12 42 42 H 1.09005 * 113.66185 * 139.58213 * 14 13 12 43 43 H 1.08995 * 113.64813 * 279.61112 * 15 12 9 44 44 H 1.09004 * 113.64138 * 50.52670 * 15 12 9 45 45 H 0.96993 * 120.00065 * 264.99905 * 16 3 2 46 46 H 1.09005 * 109.46867 * 60.00428 * 19 17 16 47 47 H 1.09000 * 109.47235 * 300.00468 * 19 17 16 48 48 H 0.97005 * 119.99878 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1256 6 7 4.0629 2.8169 0.0059 7 6 5.3855 3.0633 0.0867 8 8 6.1634 2.1486 0.2581 9 6 5.8980 4.4751 -0.0359 10 1 5.2511 5.2479 0.3794 11 6 6.7091 4.8271 -1.2861 12 6 7.4042 4.6888 0.0633 13 6 8.4861 3.6876 0.4828 14 6 9.4267 4.8959 0.6352 15 6 8.1683 5.7532 0.8584 16 7 1.6524 2.0975 -1.2518 17 6 0.4350 2.6643 -1.3669 18 8 -0.3394 2.6326 -0.4341 19 6 0.0365 3.3386 -2.6544 20 16 -1.6420 3.9971 -2.4962 21 6 -1.8438 4.7081 -4.0958 22 1 -1.0440 4.6466 -4.8188 23 6 -3.0312 5.3462 -4.4269 24 7 -4.0062 5.4206 -3.5457 25 14 -3.2449 6.1005 -6.1224 26 1 -3.8204 5.0892 -7.0450 27 1 -4.1596 7.2669 -6.0334 28 1 -1.9244 6.5450 -6.6363 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 1.0959 35 1 3.9954 0.8313 -0.6660 36 1 3.4409 3.5484 -0.1316 37 1 6.8723 4.0373 -2.0193 38 1 6.5958 5.8317 -1.6935 39 1 8.2709 3.1797 1.4229 40 1 8.7798 3.0026 -0.3125 41 1 9.9680 5.1453 -0.2774 42 1 10.0755 4.8378 1.5092 43 1 8.2072 6.7239 0.3643 44 1 7.8635 5.8212 1.9028 45 1 2.2718 2.1232 -1.9977 46 1 0.0679 2.6145 -3.4686 47 1 0.7279 4.1541 -2.8666 48 1 -4.8359 5.8669 -3.7770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356887439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:45 Heat of formation + Delta-G solvation = -59.481731 kcal Electronic energy + Delta-G solvation = -26847.073971 eV Core-core repulsion = 23028.452167 eV Total energy + Delta-G solvation = -3818.621804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47206 -40.88571 -39.42030 -37.51060 -34.96858 -34.57721 -34.53823 -33.60187 -30.79196 -29.45149 -27.64167 -26.58081 -25.71684 -23.96222 -23.53544 -22.55933 -21.58790 -21.10128 -19.83844 -19.33267 -18.23265 -17.92677 -17.47767 -16.98146 -16.86816 -16.58800 -16.27296 -16.08285 -15.98465 -15.56255 -15.35827 -14.90081 -14.62445 -14.59150 -14.30066 -13.85078 -13.70591 -13.49872 -13.24098 -13.15207 -13.02421 -12.93690 -12.87336 -12.62661 -12.50356 -12.42953 -12.32126 -12.15666 -11.78775 -11.69578 -11.29652 -11.13521 -11.02892 -10.84967 -10.83448 -10.60920 -10.24684 -10.13609 -10.05015 -8.63327 -8.33985 -6.10503 1.28360 1.42204 1.47445 1.48659 1.57893 1.67329 2.05297 2.26906 2.33186 2.78459 3.00309 3.33747 3.41770 3.54041 3.68337 3.78881 3.89404 3.95546 3.98405 4.00926 4.11479 4.14105 4.33721 4.38952 4.50843 4.52422 4.55706 4.61982 4.67421 4.80137 4.83250 4.85859 4.89821 4.92826 5.03014 5.05275 5.09472 5.16617 5.17645 5.37008 5.39954 5.42925 5.48219 5.51752 5.54320 6.20544 6.47078 6.51904 7.07951 7.20287 7.29537 8.74820 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.002385 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.298987 B =11736.800609 C =13785.053017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.080 0.920 5 C 0.123 3.877 6 N -0.720 5.720 7 C 0.542 3.458 8 O -0.571 6.571 9 C -0.190 4.190 10 H 0.138 0.862 11 C -0.111 4.111 12 C -0.137 4.137 13 C -0.090 4.090 14 C -0.134 4.134 15 C -0.094 4.094 16 N -0.710 5.710 17 C 0.539 3.461 18 O -0.548 6.548 19 C -0.132 4.132 20 S -0.144 6.144 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.258 1.258 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.410 0.590 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.413 0.587 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.629 -3.925 6.130 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.098 0.902 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.330 3.670 8 O -0.450 6.450 9 C -0.211 4.211 10 H 0.155 0.845 11 C -0.148 4.148 12 C -0.137 4.137 13 C -0.127 4.127 14 C -0.172 4.172 15 C -0.132 4.132 16 N -0.365 5.365 17 C 0.325 3.675 18 O -0.425 6.425 19 C -0.283 4.283 20 S 0.083 5.917 21 C -0.694 4.694 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.182 1.182 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.113 0.887 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.250 0.750 46 H 0.121 0.879 47 H 0.127 0.873 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.732 -4.598 7.864 26.357 hybrid contribution -0.120 0.655 -2.199 2.297 sum 24.612 -3.943 5.666 25.562 Atomic orbital electron populations 1.21735 0.96348 1.00656 1.01362 1.21858 0.95422 0.94906 1.04080 1.21253 0.93178 0.94601 0.87259 0.90152 1.21591 0.91238 0.83626 1.03648 1.45937 1.07350 1.10187 1.73694 1.19987 0.81876 0.90104 0.75024 1.90679 1.56721 1.47237 1.50376 1.22225 0.96496 0.94869 1.07478 0.84451 1.22862 0.98709 1.04040 0.89179 1.22465 0.89940 1.00818 1.00515 1.22291 0.94102 0.95579 1.00722 1.22801 0.95996 0.95688 1.02689 1.22517 0.94284 0.96622 0.99730 1.45822 1.15739 1.57799 1.17178 1.19856 0.81826 0.77578 0.88222 1.90725 1.51821 1.58906 1.41005 1.23392 1.02264 1.03670 0.99013 1.85526 1.13028 1.71918 1.21235 1.23205 1.04427 1.41983 0.99762 0.90086 1.26086 0.94428 0.95979 1.02622 1.70176 1.05677 1.42204 1.36649 0.84999 0.78726 0.77717 0.76840 1.19493 1.20374 1.18178 0.92421 0.93923 0.94789 0.90259 0.88829 0.89619 0.90130 0.75414 0.88671 0.85555 0.91079 0.92660 0.89351 0.90444 0.89890 0.89408 0.75047 0.87863 0.87297 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.51 71.98 0.61 -3.13 16 2 C -0.12 -2.25 5.61 30.59 0.17 -2.08 16 3 C 0.14 2.67 2.42 44.99 0.11 2.78 16 4 H 0.08 1.85 7.58 -2.39 -0.02 1.83 16 5 C 0.12 1.94 5.23 86.38 0.45 2.39 16 6 N -0.72 -11.91 5.39 -463.07 -2.49 -14.40 16 7 C 0.54 10.83 7.61 87.66 0.67 11.49 16 8 O -0.57 -15.06 15.14 -3.05 -0.05 -15.11 16 9 C -0.19 -2.99 6.19 -11.68 -0.07 -3.06 16 10 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 11 C -0.11 -1.50 10.23 30.44 0.31 -1.19 16 12 C -0.14 -2.11 2.87 -52.38 -0.15 -2.26 16 13 C -0.09 -1.56 6.47 30.98 0.20 -1.35 16 14 C -0.13 -1.62 8.08 31.19 0.25 -1.37 16 15 C -0.09 -1.12 8.10 30.98 0.25 -0.87 16 16 N -0.71 -15.06 4.47 -442.53 -1.98 -17.04 16 17 C 0.54 17.49 6.42 87.66 0.56 18.06 16 18 O -0.55 -22.38 13.00 -3.04 -0.04 -22.42 16 19 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 20 S -0.14 -7.67 20.57 -56.49 -1.16 -8.83 16 21 C -0.55 -30.37 9.50 67.96 0.65 -29.73 16 22 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -55.04 13.22 21.65 0.29 -54.75 16 25 Si 1.00 42.85 29.55 68.60 2.03 44.88 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.25 7.85 -2.39 -0.02 1.23 16 31 H 0.03 1.09 5.65 -2.39 -0.01 1.07 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.41 6.23 8.14 -92.71 -0.75 5.48 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.43 8.05 -2.39 -0.02 1.42 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.41 6.63 8.60 -92.71 -0.80 5.83 16 46 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 48 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -75.58 405.67 0.92 -74.66 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.59 Total: 26.53 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 4.92 Total: -13.51 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -4.19 Total: -86.19 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.09 Total: -37.53 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.16 Total: -8.83 kcal Total: -75.58 0.92 -74.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356887439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.174 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds