Wall clock time and date at job start Sat Apr 11 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 6 6 N 1.46499 * 109.47119 * 185.00066 * 5 3 2 7 7 C 1.34774 * 120.00037 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00121 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.47149 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99879 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00068 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99757 * 180.02562 * 11 10 9 14 14 N 1.31620 * 119.99843 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99699 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47127 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46916 * 119.99706 * 15 13 11 18 18 H 1.48496 * 109.47375 * 239.99700 * 15 13 11 19 19 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 20 20 C 1.34773 * 120.00316 * 275.00099 * 19 3 2 21 21 O 1.21283 * 120.00233 * 0.02562 * 20 19 3 22 22 C 1.50697 * 120.00012 * 179.97438 * 20 19 3 23 23 C 1.53007 * 110.34561 * 59.30614 * 22 20 19 24 24 C 1.51100 * 110.39264 * 297.01377 * 22 20 19 25 25 C 1.30523 * 111.10684 * 224.75041 * 24 22 20 26 26 C 1.51100 * 111.10434 * 0.02562 * 25 24 22 27 27 C 1.54634 * 110.38861 * 181.58861 * 22 20 19 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.08993 * 109.47112 * 305.00335 * 5 3 2 34 34 H 1.08997 * 109.46928 * 65.00743 * 5 3 2 35 35 H 0.97003 * 120.00268 * 0.02562 * 6 5 3 36 36 H 1.08993 * 109.47372 * 299.99914 * 9 7 6 37 37 H 1.09006 * 109.47127 * 60.00186 * 9 7 6 38 38 H 0.97007 * 119.99733 * 180.02562 * 14 13 11 39 39 H 0.97003 * 119.99976 * 95.00125 * 19 3 2 40 40 H 1.08994 * 109.47008 * 60.69364 * 23 22 20 41 41 H 1.08992 * 109.47303 * 180.69967 * 23 22 20 42 42 H 1.09001 * 109.46670 * 300.69680 * 23 22 20 43 43 H 1.08005 * 124.44387 * 44.72574 * 24 22 20 44 44 H 1.08005 * 124.44634 * 179.97438 * 25 24 22 45 45 H 1.08993 * 110.39038 * 135.24643 * 26 25 24 46 46 H 1.09010 * 110.38228 * 257.50980 * 26 25 24 47 47 H 1.09006 * 111.04094 * 261.48152 * 27 22 20 48 48 H 1.09001 * 111.03809 * 25.41524 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0868 8 8 6.1633 2.1486 -0.2592 9 6 5.8980 4.4750 0.0359 10 16 7.7020 4.4771 -0.1127 11 6 8.0213 6.2010 0.0631 12 1 7.2026 6.8895 0.2118 13 6 9.3252 6.6742 0.0105 14 7 10.3230 5.8350 -0.1702 15 14 9.6637 8.5018 0.1962 16 1 8.3813 9.2258 0.3876 17 1 10.5388 8.7259 1.3750 18 1 10.3402 9.0066 -1.0256 19 7 1.6524 2.0974 1.2518 20 6 0.4351 2.6643 1.3670 21 8 -0.3397 2.6319 0.4345 22 6 0.0363 3.3375 2.6549 23 6 1.0050 4.4757 2.9825 24 6 0.0014 2.3345 3.7845 25 6 -1.0705 2.4851 4.5139 26 6 -1.9296 3.6133 3.9920 27 6 -1.4109 3.8735 2.5570 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8499 1.0378 -1.0960 35 1 3.4410 3.5483 0.1316 36 1 5.4672 5.0879 -0.7557 37 1 5.6133 4.8819 1.0062 38 1 11.2342 6.1656 -0.2066 39 1 2.2719 2.1231 1.9979 40 1 0.9789 5.2163 2.1833 41 1 0.7110 4.9441 3.9217 42 1 2.0153 4.0773 3.0758 43 1 0.7632 1.5903 3.9644 44 1 -1.3121 1.8819 5.3766 45 1 -2.9773 3.3139 3.9700 46 1 -1.8026 4.5035 4.6083 47 1 -1.4190 4.9381 2.3228 48 1 -1.9884 3.3092 1.8248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498931102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:36 Heat of formation + Delta-G solvation = -71.141059 kcal Electronic energy + Delta-G solvation = -27454.833873 eV Core-core repulsion = 23635.706483 eV Total energy + Delta-G solvation = -3819.127390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06029 -39.36663 -38.38906 -36.50777 -33.83882 -33.00167 -32.45063 -31.22389 -30.08730 -29.28516 -27.84928 -25.86786 -25.50464 -23.53949 -22.75132 -21.03813 -20.33501 -20.21116 -19.24045 -17.96760 -17.45064 -16.86774 -16.32682 -16.03038 -15.74671 -15.47259 -15.11805 -14.82882 -14.80004 -14.01960 -13.90299 -13.74487 -13.52146 -13.39983 -13.29122 -12.94848 -12.76161 -12.63804 -12.50453 -12.30599 -12.05686 -11.84867 -11.81366 -11.60553 -11.58726 -11.36239 -11.17198 -11.08798 -11.06525 -11.04123 -10.77375 -10.04476 -9.83181 -9.49894 -9.33732 -9.28406 -9.10213 -8.97507 -8.26089 -6.52630 -6.24035 -3.94624 1.74636 2.42930 2.83328 3.00278 3.05546 3.20028 3.26713 3.31132 3.66857 4.04314 4.16588 4.18172 4.34428 4.53662 4.59117 4.73994 4.83504 4.84894 4.93026 5.09979 5.11351 5.13096 5.15863 5.24891 5.28052 5.30231 5.46425 5.49568 5.51328 5.54351 5.62329 5.72759 5.76334 5.76530 5.77859 5.85094 5.89169 5.90534 6.03460 6.10324 6.17542 6.23801 6.40768 6.51914 7.20796 7.57723 7.62485 7.96510 8.33267 8.54620 9.21591 10.83430 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.002453 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.383810 B =11410.296251 C =12946.357986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.723 5.723 20 C 0.530 3.470 21 O -0.531 6.531 22 C -0.058 4.058 23 C -0.136 4.136 24 C -0.161 4.161 25 C -0.149 4.149 26 C -0.104 4.104 27 C -0.106 4.106 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.433 -7.736 7.948 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.376 5.376 20 C 0.316 3.684 21 O -0.407 6.407 22 C -0.061 4.061 23 C -0.193 4.193 24 C -0.179 4.179 25 C -0.167 4.167 26 C -0.141 4.141 27 C -0.144 4.144 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.237 0.763 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.485 -9.317 6.937 27.101 hybrid contribution -0.521 2.465 0.833 2.653 sum -25.006 -6.853 7.770 27.067 Atomic orbital electron populations 1.21784 0.94593 1.00617 1.03053 1.21878 0.97191 0.95135 1.02798 1.21343 0.93567 0.94377 0.87825 0.88612 1.21589 0.91494 0.84698 1.03370 1.45987 1.07822 1.08844 1.76776 1.20322 0.81344 0.91139 0.75388 1.90711 1.55432 1.46166 1.46682 1.23527 1.06862 0.95145 1.04863 1.85403 0.91932 1.11021 1.94983 1.22901 0.95449 0.92399 1.57554 0.90889 1.24997 0.95084 0.98970 0.94562 1.70024 0.99472 1.34490 1.46273 0.86116 0.78424 0.82976 0.77974 1.19609 1.20564 1.20551 1.46101 1.16897 1.57882 1.16684 1.20375 0.81240 0.77563 0.89183 1.90699 1.50937 1.58736 1.40342 1.20703 0.98189 0.95411 0.91832 1.21791 0.98167 0.96648 1.02698 1.23032 0.99363 0.98951 0.96551 1.23332 0.96034 0.97905 0.99435 1.21452 0.99505 0.97316 0.95842 1.22522 0.92947 1.01835 0.97061 0.92448 0.93552 0.92156 0.91513 0.90649 0.90963 0.90008 0.76752 0.89245 0.89278 0.92221 0.76286 0.91545 0.91180 0.91734 0.85429 0.85440 0.90831 0.90395 0.90370 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.51 37.16 0.32 -0.99 16 2 C -0.13 -1.05 5.61 -26.73 -0.15 -1.20 16 3 C 0.13 1.15 2.42 -67.93 -0.16 0.99 16 4 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16 5 C 0.11 1.18 5.23 -4.04 -0.02 1.15 16 6 N -0.74 -9.13 5.39 -60.30 -0.32 -9.46 16 7 C 0.53 9.46 7.85 -10.99 -0.09 9.38 16 8 O -0.52 -11.28 15.86 5.56 0.09 -11.19 16 9 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 10 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 11 C -0.53 -15.06 9.50 30.94 0.29 -14.76 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 15 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 N -0.72 -5.69 4.32 -53.81 -0.23 -5.92 16 20 C 0.53 4.92 5.11 -10.99 -0.06 4.87 16 21 O -0.53 -6.53 12.63 5.56 0.07 -6.46 16 22 C -0.06 -0.44 0.73 -155.76 -0.11 -0.55 16 23 C -0.14 -0.93 8.39 37.16 0.31 -0.62 16 24 C -0.16 -1.09 9.35 -35.70 -0.33 -1.43 16 25 C -0.15 -0.94 10.78 -35.70 -0.38 -1.33 16 26 C -0.10 -0.64 6.81 -26.74 -0.18 -0.82 16 27 C -0.11 -0.81 6.01 -24.93 -0.15 -0.96 16 28 H 0.06 0.59 5.64 -51.93 -0.29 0.30 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 4.14 8.14 -40.82 -0.33 3.80 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 37 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.40 2.72 8.03 -40.82 -0.33 2.39 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.41 7.58 -51.93 -0.39 0.02 16 43 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.08 0.56 7.90 -51.93 -0.41 0.15 16 48 H 0.09 0.83 7.02 -51.93 -0.36 0.47 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -34.55 402.34 -9.39 -43.95 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.96 Total: 2.93 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.59 Total: -7.08 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.18 Total: -40.60 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.16 Total: -17.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.55 -9.39 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498931102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.194 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds