Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 6 6 N 1.46499 * 109.47119 * 185.00066 * 5 3 2 7 7 C 1.34774 * 120.00037 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00121 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.47149 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99879 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00068 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99757 * 180.02562 * 11 10 9 14 14 N 1.31620 * 119.99843 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99699 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47127 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46916 * 119.99706 * 15 13 11 18 18 H 1.48496 * 109.47375 * 239.99700 * 15 13 11 19 19 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 20 20 C 1.34773 * 120.00316 * 275.00099 * 19 3 2 21 21 O 1.21283 * 120.00233 * 0.02562 * 20 19 3 22 22 C 1.50697 * 120.00012 * 179.97438 * 20 19 3 23 23 C 1.53007 * 110.34561 * 59.30614 * 22 20 19 24 24 C 1.51100 * 110.39264 * 297.01377 * 22 20 19 25 25 C 1.30523 * 111.10684 * 224.75041 * 24 22 20 26 26 C 1.51100 * 111.10434 * 0.02562 * 25 24 22 27 27 C 1.54634 * 110.38861 * 181.58861 * 22 20 19 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.08993 * 109.47112 * 305.00335 * 5 3 2 34 34 H 1.08997 * 109.46928 * 65.00743 * 5 3 2 35 35 H 0.97003 * 120.00268 * 0.02562 * 6 5 3 36 36 H 1.08993 * 109.47372 * 299.99914 * 9 7 6 37 37 H 1.09006 * 109.47127 * 60.00186 * 9 7 6 38 38 H 0.97007 * 119.99733 * 180.02562 * 14 13 11 39 39 H 0.97003 * 119.99976 * 95.00125 * 19 3 2 40 40 H 1.08994 * 109.47008 * 60.69364 * 23 22 20 41 41 H 1.08992 * 109.47303 * 180.69967 * 23 22 20 42 42 H 1.09001 * 109.46670 * 300.69680 * 23 22 20 43 43 H 1.08005 * 124.44387 * 44.72574 * 24 22 20 44 44 H 1.08005 * 124.44634 * 179.97438 * 25 24 22 45 45 H 1.08993 * 110.39038 * 135.24643 * 26 25 24 46 46 H 1.09010 * 110.38228 * 257.50980 * 26 25 24 47 47 H 1.09006 * 111.04094 * 261.48152 * 27 22 20 48 48 H 1.09001 * 111.03809 * 25.41524 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0868 8 8 6.1633 2.1486 -0.2592 9 6 5.8980 4.4750 0.0359 10 16 7.7020 4.4771 -0.1127 11 6 8.0213 6.2010 0.0631 12 1 7.2026 6.8895 0.2118 13 6 9.3252 6.6742 0.0105 14 7 10.3230 5.8350 -0.1702 15 14 9.6637 8.5018 0.1962 16 1 8.3813 9.2258 0.3876 17 1 10.5388 8.7259 1.3750 18 1 10.3402 9.0066 -1.0256 19 7 1.6524 2.0974 1.2518 20 6 0.4351 2.6643 1.3670 21 8 -0.3397 2.6319 0.4345 22 6 0.0363 3.3375 2.6549 23 6 1.0050 4.4757 2.9825 24 6 0.0014 2.3345 3.7845 25 6 -1.0705 2.4851 4.5139 26 6 -1.9296 3.6133 3.9920 27 6 -1.4109 3.8735 2.5570 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8499 1.0378 -1.0960 35 1 3.4410 3.5483 0.1316 36 1 5.4672 5.0879 -0.7557 37 1 5.6133 4.8819 1.0062 38 1 11.2342 6.1656 -0.2066 39 1 2.2719 2.1231 1.9979 40 1 0.9789 5.2163 2.1833 41 1 0.7110 4.9441 3.9217 42 1 2.0153 4.0773 3.0758 43 1 0.7632 1.5903 3.9644 44 1 -1.3121 1.8819 5.3766 45 1 -2.9773 3.3139 3.9700 46 1 -1.8026 4.5035 4.6083 47 1 -1.4190 4.9381 2.3228 48 1 -1.9884 3.3092 1.8248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498931102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = -94.046643 kcal Electronic energy + Delta-G solvation = -27455.827134 eV Core-core repulsion = 23635.706483 eV Total energy + Delta-G solvation = -3820.120651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76716 -40.61983 -39.14357 -37.40728 -34.99456 -34.57688 -33.69461 -31.83517 -31.39326 -29.86530 -28.92044 -27.63942 -26.42959 -24.44359 -23.42743 -21.89697 -21.52019 -20.81547 -19.98204 -19.70653 -18.24090 -17.75082 -17.62262 -17.13647 -16.87411 -16.54311 -16.43468 -16.09670 -15.84575 -15.45848 -14.83417 -14.61708 -14.53725 -14.42695 -14.16544 -14.13476 -13.79503 -13.52968 -13.30634 -13.15362 -13.07863 -12.93148 -12.89385 -12.63159 -12.59724 -12.51609 -12.28997 -12.16224 -12.07078 -11.77899 -11.73505 -11.69716 -11.15490 -10.98532 -10.76318 -10.26617 -10.17377 -10.05329 -9.85375 -8.65576 -8.34514 -6.11878 1.23694 1.27267 1.41599 1.47302 1.58228 1.60425 1.72478 2.12538 2.26813 2.31629 2.99943 3.32232 3.47891 3.53658 3.62205 3.90453 3.93665 4.02545 4.05173 4.11735 4.29109 4.32114 4.38721 4.40520 4.51512 4.53636 4.62840 4.66799 4.76634 4.78609 4.82272 4.92614 4.98287 4.99097 5.06738 5.15307 5.20345 5.22228 5.32435 5.36232 5.42919 5.44215 5.52649 5.55780 5.93081 6.20554 6.43196 6.52958 7.07341 7.20630 7.26024 8.74815 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.002453 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.383810 B =11410.296251 C =12946.357986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.145 3.855 4 H 0.084 0.916 5 C 0.116 3.884 6 N -0.713 5.713 7 C 0.537 3.463 8 O -0.561 6.561 9 C -0.131 4.131 10 S -0.148 6.148 11 C -0.544 4.544 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.275 1.275 19 N -0.715 5.715 20 C 0.530 3.470 21 O -0.564 6.564 22 C -0.055 4.055 23 C -0.134 4.134 24 C -0.172 4.172 25 C -0.148 4.148 26 C -0.103 4.103 27 C -0.110 4.110 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.412 0.588 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.410 0.590 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.137 0.863 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.865 -6.854 9.244 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.102 0.898 5 C -0.008 4.008 6 N -0.367 5.367 7 C 0.323 3.677 8 O -0.439 6.439 9 C -0.282 4.282 10 S 0.079 5.921 11 C -0.692 4.692 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.201 1.201 19 N -0.367 5.367 20 C 0.317 3.683 21 O -0.442 6.442 22 C -0.058 4.058 23 C -0.192 4.192 24 C -0.190 4.190 25 C -0.166 4.166 26 C -0.140 4.140 27 C -0.147 4.147 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.248 0.752 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.965 -8.434 8.253 28.521 hybrid contribution -0.232 2.117 0.423 2.171 sum -26.197 -6.317 8.676 28.310 Atomic orbital electron populations 1.21698 0.95319 1.00774 1.01629 1.21858 0.96315 0.94576 1.03854 1.21168 0.92003 0.94966 0.87830 0.89770 1.21695 0.92410 0.83169 1.03489 1.45707 1.06040 1.10417 1.74502 1.19990 0.82636 0.89776 0.75344 1.90705 1.56957 1.46994 1.49241 1.23375 1.01078 0.97092 1.06665 1.85558 0.99292 1.11886 1.95383 1.23226 0.96097 0.92555 1.57356 0.89989 1.26109 0.94784 1.04352 0.93908 1.70182 1.00026 1.37041 1.47487 0.84923 0.78761 0.76331 0.78045 1.18047 1.19898 1.20073 1.46026 1.16736 1.57337 1.16616 1.20705 0.81037 0.77148 0.89369 1.90692 1.51900 1.60041 1.41599 1.20700 0.98157 0.95801 0.91178 1.21798 0.98254 0.96255 1.02872 1.23111 1.00129 0.99306 0.96439 1.23551 0.95590 0.97754 0.99697 1.21469 0.99782 0.97874 0.94841 1.22508 0.93015 1.01606 0.97609 0.93660 0.92553 0.93775 0.90375 0.89711 0.90400 0.90311 0.75185 0.87655 0.87046 0.92011 0.75312 0.92049 0.90412 0.91156 0.84477 0.83881 0.90300 0.89304 0.90165 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.51 71.98 0.61 -1.76 16 2 C -0.13 -1.81 5.61 30.59 0.17 -1.64 16 3 C 0.15 2.29 2.42 44.99 0.11 2.40 16 4 H 0.08 1.60 7.58 -2.39 -0.02 1.58 16 5 C 0.12 2.22 5.23 86.38 0.45 2.67 16 6 N -0.71 -16.26 5.39 -463.08 -2.49 -18.76 16 7 C 0.54 18.53 7.85 87.66 0.69 19.21 16 8 O -0.56 -24.56 15.86 -3.04 -0.05 -24.61 16 9 C -0.13 -4.97 6.16 71.24 0.44 -4.54 16 10 S -0.15 -8.05 20.57 -56.49 -1.16 -9.22 16 11 C -0.54 -30.60 9.50 67.96 0.65 -29.95 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.74 5.49 84.86 0.47 1.21 16 14 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 15 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 19 N -0.71 -10.06 4.32 -442.54 -1.91 -11.97 16 20 C 0.53 9.32 5.11 87.66 0.45 9.77 16 21 O -0.56 -13.77 12.63 -3.04 -0.04 -13.81 16 22 C -0.06 -0.76 0.73 -52.99 -0.04 -0.80 16 23 C -0.13 -1.59 8.39 71.98 0.60 -0.99 16 24 C -0.17 -2.02 9.35 26.26 0.25 -1.77 16 25 C -0.15 -1.57 10.78 26.26 0.28 -1.29 16 26 C -0.10 -1.10 6.81 30.59 0.21 -0.89 16 27 C -0.11 -1.60 6.01 31.76 0.19 -1.41 16 28 H 0.04 0.90 5.64 -2.39 -0.01 0.88 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.90 7.85 -2.38 -0.02 0.89 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 7.52 8.14 -92.71 -0.75 6.76 16 36 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 37 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 39 H 0.41 4.61 8.03 -92.71 -0.74 3.86 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.74 7.58 -2.39 -0.02 0.72 16 43 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 46 H 0.09 0.77 8.14 -2.38 -0.02 0.76 16 47 H 0.08 1.10 7.90 -2.38 -0.02 1.08 16 48 H 0.07 1.29 7.02 -2.39 -0.02 1.27 16 Total: -1.00 -76.55 402.34 1.65 -74.91 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.54 Total: 23.19 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.52 Total: -9.79 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -4.12 Total: -85.82 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.09 Total: -38.42 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.22 kcal Total: -76.55 1.65 -74.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498931102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.141 kcal (2) G-P(sol) polarization free energy of solvation -76.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds