Wall clock time and date at job start Sat Apr 11 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 H 1.09005 * 109.47122 * 305.00023 * 3 2 1 5 5 C 1.52996 * 109.47189 * 184.99710 * 3 2 1 6 6 N 1.46503 * 109.46854 * 184.99841 * 5 3 2 7 7 C 1.34781 * 119.99745 * 179.97438 * 6 5 3 8 8 O 1.21616 * 120.00274 * 0.02562 * 7 6 5 9 9 C 1.47103 * 119.99974 * 180.02562 * 7 6 5 10 10 C 1.32986 * 120.00177 * 174.00313 * 9 7 6 11 11 C 1.50699 * 120.00160 * 172.07280 * 10 9 7 12 12 C 1.50703 * 120.00054 * 352.34587 * 10 9 7 13 13 C 1.53002 * 117.50103 * 176.61493 * 12 10 9 14 14 C 1.52992 * 117.50222 * 107.98719 * 12 10 9 15 15 N 1.46500 * 109.47017 * 64.99700 * 3 2 1 16 16 C 1.34781 * 120.00203 * 274.99948 * 15 3 2 17 17 O 1.21280 * 119.99767 * 0.02562 * 16 15 3 18 18 C 1.50690 * 120.00027 * 180.02562 * 16 15 3 19 19 S 1.81004 * 109.46969 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99987 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00220 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00190 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00343 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99830 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47541 * 89.99535 * 24 22 20 26 26 H 1.48506 * 109.47040 * 209.99996 * 24 22 20 27 27 H 1.48508 * 109.47137 * 329.99547 * 24 22 20 28 28 H 1.08999 * 109.47095 * 300.00405 * 1 2 3 29 29 H 1.09005 * 109.46905 * 60.00154 * 1 2 3 30 30 H 1.08995 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47497 * 239.99953 * 2 1 3 32 32 H 1.09005 * 109.46905 * 119.99845 * 2 1 3 33 33 H 1.09006 * 109.47216 * 65.00276 * 5 3 2 34 34 H 1.08994 * 109.47178 * 304.99827 * 5 3 2 35 35 H 0.97000 * 120.00090 * 0.02562 * 6 5 3 36 36 H 1.08004 * 119.99752 * 353.99772 * 9 7 6 37 37 H 1.09002 * 109.47070 * 270.27133 * 11 10 9 38 38 H 1.08994 * 109.47489 * 30.27029 * 11 10 9 39 39 H 1.09004 * 109.47329 * 150.27476 * 11 10 9 40 40 H 1.09003 * 115.54672 * 322.31799 * 12 10 9 41 41 H 1.08996 * 117.49858 * 359.97438 * 13 12 10 42 42 H 1.08997 * 117.49597 * 145.02127 * 13 12 10 43 43 H 1.09002 * 117.50462 * 214.97903 * 14 12 10 44 44 H 1.09007 * 117.49635 * 359.97438 * 14 12 10 45 45 H 0.96994 * 120.00191 * 95.00399 * 15 3 2 46 46 H 1.09000 * 109.47438 * 299.99708 * 18 16 15 47 47 H 1.08999 * 109.47438 * 60.00428 * 18 16 15 48 48 H 0.96998 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5648 1.4443 -0.1256 6 7 4.0630 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0857 8 8 6.1657 2.1458 -0.2576 9 6 5.8861 4.4410 0.0351 10 6 7.1951 4.6719 0.0762 11 6 7.7129 6.0860 0.0196 12 6 8.1610 3.5192 0.1731 13 6 9.6555 3.8448 0.1366 14 6 8.9869 3.1831 -1.0701 15 7 1.6524 2.0975 1.2518 16 6 0.4351 2.6645 1.3669 17 8 -0.3396 2.6320 0.4343 18 6 0.0366 3.3387 2.6543 19 16 -1.6424 3.9961 2.4965 20 6 -1.8441 4.7072 4.0960 21 1 -1.0440 4.6464 4.8188 22 6 -3.0313 5.3455 4.4270 23 7 -3.1822 5.8763 5.6221 24 14 -4.4156 5.4500 3.1771 25 1 -5.3014 4.2667 3.3193 26 1 -5.2017 6.6880 3.4115 27 1 -3.8440 5.4787 1.8067 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8500 1.0377 -1.0960 34 1 3.9953 0.8311 0.6660 35 1 3.4410 3.5483 0.1316 36 1 5.1903 5.2652 0.0903 37 1 7.8753 6.3722 -1.0196 38 1 6.9839 6.7583 0.4718 39 1 8.6542 6.1505 0.5655 40 1 7.8415 2.6900 0.8044 41 1 9.9402 4.8926 0.0421 42 1 10.3195 3.2298 0.7440 43 1 9.2112 2.1328 -1.2566 44 1 8.8314 3.7954 -1.9583 45 1 2.2718 2.1232 1.9977 46 1 0.0679 2.6147 3.4685 47 1 0.7280 4.1542 2.8665 48 1 -4.0121 6.3221 5.8535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498941676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:55 Heat of formation + Delta-G solvation = -43.300460 kcal Electronic energy + Delta-G solvation = -26721.728247 eV Core-core repulsion = 22903.808116 eV Total energy + Delta-G solvation = -3817.920131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34456 -39.62676 -38.01473 -36.46971 -34.02936 -33.69104 -32.54450 -32.45924 -29.76971 -28.89649 -27.70443 -25.64523 -24.28527 -23.02629 -22.57718 -21.57772 -20.90130 -20.48140 -18.98868 -17.89968 -17.35232 -16.81026 -16.52617 -16.05531 -15.67209 -15.39976 -15.04093 -14.90815 -14.81368 -14.16670 -14.00808 -13.68614 -13.53665 -13.50764 -13.27991 -13.19093 -12.95872 -12.81885 -12.64294 -12.39287 -11.93144 -11.81544 -11.57130 -11.50950 -11.32070 -11.26751 -11.07804 -11.04075 -10.86243 -10.66598 -10.61893 -9.89117 -9.80062 -9.56061 -9.39386 -9.07967 -9.04992 -9.00294 -8.54186 -6.95455 -6.31958 -4.04003 1.03308 2.69561 2.87821 2.99414 3.05118 3.27342 3.31345 3.47007 3.61408 3.68254 4.22933 4.29739 4.35918 4.45037 4.68348 4.69688 4.77985 4.80111 4.84424 4.96550 5.01230 5.07104 5.15070 5.18386 5.21846 5.22991 5.33883 5.40495 5.42910 5.51298 5.60028 5.69620 5.70830 5.80879 5.83761 5.91015 5.96507 5.98003 6.04645 6.13736 6.21084 6.21576 6.47257 6.53710 7.31129 7.52925 7.91003 8.05478 8.38657 8.42550 9.14081 10.77265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.002306 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.416801 B =12139.272707 C =13806.284235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.135 3.865 4 H 0.095 0.905 5 C 0.115 3.885 6 N -0.728 5.728 7 C 0.546 3.454 8 O -0.538 6.538 9 C -0.229 4.229 10 C -0.001 4.001 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.191 4.191 14 C -0.152 4.152 15 N -0.734 5.734 16 C 0.531 3.469 17 O -0.511 6.511 18 C -0.126 4.126 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.404 0.596 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.400 0.600 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.878 -5.735 -12.431 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.113 0.887 5 C -0.010 4.010 6 N -0.380 5.380 7 C 0.336 3.664 8 O -0.418 6.418 9 C -0.250 4.250 10 C -0.003 4.003 11 C -0.187 4.187 12 C -0.131 4.131 13 C -0.228 4.228 14 C -0.190 4.190 15 N -0.389 5.389 16 C 0.318 3.682 17 O -0.385 6.385 18 C -0.276 4.276 19 S 0.087 5.913 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.145 0.855 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.234 0.766 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.998 -6.353 -13.993 26.835 hybrid contribution 0.017 0.559 1.340 1.452 sum 22.016 -5.794 -12.653 26.045 Atomic orbital electron populations 1.21804 0.94090 1.00745 1.03730 1.21880 0.97731 0.94978 1.02276 1.21259 0.92576 0.94658 0.88572 0.88664 1.21638 0.92537 0.83718 1.03070 1.45915 1.07687 1.09795 1.74570 1.18540 0.81860 0.89436 0.76539 1.90768 1.55375 1.46463 1.49166 1.22372 0.96124 0.95947 1.10533 1.21822 0.93394 0.95251 0.89851 1.21050 1.02420 0.92270 1.02950 1.21317 0.89982 0.98453 1.03355 1.23172 0.95323 1.01709 1.02574 1.22783 1.02619 1.01553 0.91998 1.46082 1.17289 1.59241 1.16277 1.20232 0.80948 0.77563 0.89496 1.90718 1.50334 1.57359 1.40053 1.23293 1.03882 1.03017 0.97440 1.84775 1.12013 1.72165 1.22385 1.22315 1.05595 1.41698 0.97361 0.89417 1.24720 0.97820 0.93577 0.95230 1.69937 1.26842 1.35531 1.19321 0.86734 0.82799 0.78585 0.83694 1.19226 1.19958 1.15942 0.91810 0.92062 0.93545 0.91131 0.91640 0.90110 0.90875 0.76050 0.85281 0.90232 0.90683 0.90663 0.85475 0.88581 0.88674 0.88595 0.89166 0.76606 0.88603 0.88561 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.51 37.16 0.32 -1.52 16 2 C -0.13 -1.25 5.61 -26.73 -0.15 -1.40 16 3 C 0.13 1.31 2.42 -67.93 -0.16 1.15 16 4 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 5 C 0.11 0.99 5.23 -4.04 -0.02 0.97 16 6 N -0.73 -6.54 5.38 -61.49 -0.33 -6.87 16 7 C 0.55 5.77 7.67 -12.66 -0.10 5.67 16 8 O -0.54 -7.02 13.45 5.26 0.07 -6.95 16 9 C -0.23 -2.02 9.63 -37.81 -0.36 -2.38 16 10 C 0.00 -0.01 5.80 -101.17 -0.59 -0.60 16 11 C -0.13 -0.75 9.45 36.01 0.34 -0.41 16 12 C -0.11 -1.03 4.12 -91.77 -0.38 -1.41 16 13 C -0.19 -1.35 9.78 -26.73 -0.26 -1.61 16 14 C -0.15 -1.26 10.22 -26.73 -0.27 -1.54 16 15 N -0.73 -8.02 4.47 -53.81 -0.24 -8.26 16 16 C 0.53 8.32 6.42 -10.99 -0.07 8.25 16 17 O -0.51 -9.67 13.00 5.56 0.07 -9.60 16 18 C -0.13 -2.26 6.16 36.00 0.22 -2.04 16 19 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 20 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 21 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 23 N -0.88 -26.21 13.97 55.49 0.78 -25.44 16 24 Si 0.86 21.42 27.74 -169.99 -4.71 16.70 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.24 -5.85 6.74 56.52 0.38 -5.46 16 28 H 0.06 0.97 5.64 -51.93 -0.29 0.68 16 29 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 3.37 8.12 -40.82 -0.33 3.03 16 36 H 0.13 0.91 8.04 -52.48 -0.42 0.49 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 39 H 0.07 0.38 6.44 -51.93 -0.33 0.04 16 40 H 0.13 1.41 6.62 -51.93 -0.34 1.06 16 41 H 0.10 0.55 6.35 -51.93 -0.33 0.22 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.40 3.60 8.60 -40.82 -0.35 3.25 16 46 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 47 H 0.10 1.61 8.14 -51.92 -0.42 1.18 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -33.47 403.27 -9.41 -42.88 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.85 Total: 5.45 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.27 Total: -8.60 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.20 Total: -40.57 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.14 Total: -16.55 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.47 -9.41 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498941676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.420 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds