Wall clock time and date at job start Sat Apr 11 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 H 1.09005 * 109.47122 * 305.00023 * 3 2 1 5 5 C 1.52996 * 109.47189 * 184.99710 * 3 2 1 6 6 N 1.46503 * 109.46854 * 184.99841 * 5 3 2 7 7 C 1.34781 * 119.99745 * 179.97438 * 6 5 3 8 8 O 1.21616 * 120.00274 * 0.02562 * 7 6 5 9 9 C 1.47103 * 119.99974 * 180.02562 * 7 6 5 10 10 C 1.32986 * 120.00177 * 174.00313 * 9 7 6 11 11 C 1.50699 * 120.00160 * 172.07280 * 10 9 7 12 12 C 1.50703 * 120.00054 * 352.34587 * 10 9 7 13 13 C 1.53002 * 117.50103 * 176.61493 * 12 10 9 14 14 C 1.52992 * 117.50222 * 107.98719 * 12 10 9 15 15 N 1.46500 * 109.47017 * 64.99700 * 3 2 1 16 16 C 1.34781 * 120.00203 * 274.99948 * 15 3 2 17 17 O 1.21280 * 119.99767 * 0.02562 * 16 15 3 18 18 C 1.50690 * 120.00027 * 180.02562 * 16 15 3 19 19 S 1.81004 * 109.46969 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99987 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00220 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00190 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00343 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99830 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47541 * 89.99535 * 24 22 20 26 26 H 1.48506 * 109.47040 * 209.99996 * 24 22 20 27 27 H 1.48508 * 109.47137 * 329.99547 * 24 22 20 28 28 H 1.08999 * 109.47095 * 300.00405 * 1 2 3 29 29 H 1.09005 * 109.46905 * 60.00154 * 1 2 3 30 30 H 1.08995 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47497 * 239.99953 * 2 1 3 32 32 H 1.09005 * 109.46905 * 119.99845 * 2 1 3 33 33 H 1.09006 * 109.47216 * 65.00276 * 5 3 2 34 34 H 1.08994 * 109.47178 * 304.99827 * 5 3 2 35 35 H 0.97000 * 120.00090 * 0.02562 * 6 5 3 36 36 H 1.08004 * 119.99752 * 353.99772 * 9 7 6 37 37 H 1.09002 * 109.47070 * 270.27133 * 11 10 9 38 38 H 1.08994 * 109.47489 * 30.27029 * 11 10 9 39 39 H 1.09004 * 109.47329 * 150.27476 * 11 10 9 40 40 H 1.09003 * 115.54672 * 322.31799 * 12 10 9 41 41 H 1.08996 * 117.49858 * 359.97438 * 13 12 10 42 42 H 1.08997 * 117.49597 * 145.02127 * 13 12 10 43 43 H 1.09002 * 117.50462 * 214.97903 * 14 12 10 44 44 H 1.09007 * 117.49635 * 359.97438 * 14 12 10 45 45 H 0.96994 * 120.00191 * 95.00399 * 15 3 2 46 46 H 1.09000 * 109.47438 * 299.99708 * 18 16 15 47 47 H 1.08999 * 109.47438 * 60.00428 * 18 16 15 48 48 H 0.96998 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5648 1.4443 -0.1256 6 7 4.0630 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0857 8 8 6.1657 2.1458 -0.2576 9 6 5.8861 4.4410 0.0351 10 6 7.1951 4.6719 0.0762 11 6 7.7129 6.0860 0.0196 12 6 8.1610 3.5192 0.1731 13 6 9.6555 3.8448 0.1366 14 6 8.9869 3.1831 -1.0701 15 7 1.6524 2.0975 1.2518 16 6 0.4351 2.6645 1.3669 17 8 -0.3396 2.6320 0.4343 18 6 0.0366 3.3387 2.6543 19 16 -1.6424 3.9961 2.4965 20 6 -1.8441 4.7072 4.0960 21 1 -1.0440 4.6464 4.8188 22 6 -3.0313 5.3455 4.4270 23 7 -3.1822 5.8763 5.6221 24 14 -4.4156 5.4500 3.1771 25 1 -5.3014 4.2667 3.3193 26 1 -5.2017 6.6880 3.4115 27 1 -3.8440 5.4787 1.8067 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8500 1.0377 -1.0960 34 1 3.9953 0.8311 0.6660 35 1 3.4410 3.5483 0.1316 36 1 5.1903 5.2652 0.0903 37 1 7.8753 6.3722 -1.0196 38 1 6.9839 6.7583 0.4718 39 1 8.6542 6.1505 0.5655 40 1 7.8415 2.6900 0.8044 41 1 9.9402 4.8926 0.0421 42 1 10.3195 3.2298 0.7440 43 1 9.2112 2.1328 -1.2566 44 1 8.8314 3.7954 -1.9583 45 1 2.2718 2.1232 1.9977 46 1 0.0679 2.6147 3.4685 47 1 0.7280 4.1542 2.8665 48 1 -4.0121 6.3221 5.8535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498941676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:54 Heat of formation + Delta-G solvation = -65.244784 kcal Electronic energy + Delta-G solvation = -26722.679824 eV Core-core repulsion = 22903.808116 eV Total energy + Delta-G solvation = -3818.871708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27139 -40.62869 -38.71376 -37.46432 -34.89713 -34.66301 -34.30417 -33.62432 -30.88613 -29.85943 -28.44120 -27.83039 -25.04526 -23.75292 -23.17476 -22.58833 -21.70864 -21.53298 -19.97528 -19.55848 -18.14442 -17.98382 -17.44943 -17.11511 -17.00637 -16.66131 -16.32306 -15.97381 -15.62560 -15.50759 -15.04162 -14.84825 -14.68049 -14.50819 -14.26748 -14.03333 -13.93478 -13.75966 -13.55050 -13.33007 -13.16656 -13.05408 -12.93748 -12.68677 -12.50639 -12.40758 -12.13691 -12.09742 -11.85655 -11.77745 -11.70201 -11.29785 -11.16513 -10.89917 -10.57562 -10.51386 -10.17082 -10.06482 -9.73197 -8.96882 -8.50864 -6.20694 0.36860 1.00578 1.31866 1.47148 1.56639 1.61765 2.15418 2.24983 2.29967 2.34738 2.73346 2.87536 3.06338 3.55299 3.62630 3.83862 3.89477 4.00030 4.06179 4.12900 4.17873 4.23979 4.26521 4.39986 4.42899 4.49413 4.54859 4.64940 4.69931 4.72483 4.83272 4.85004 4.93720 4.97343 5.06170 5.08688 5.17714 5.22909 5.26556 5.42269 5.46586 5.48931 5.54044 5.61047 5.71299 6.12447 6.46944 6.57256 6.94484 7.23279 7.28855 8.61558 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.002306 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.416801 B =12139.272707 C =13806.284235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.143 3.857 4 H 0.083 0.917 5 C 0.124 3.876 6 N -0.722 5.722 7 C 0.541 3.459 8 O -0.569 6.569 9 C -0.245 4.245 10 C 0.002 3.998 11 C -0.129 4.129 12 C -0.131 4.131 13 C -0.173 4.173 14 C -0.159 4.159 15 N -0.710 5.710 16 C 0.540 3.460 17 O -0.545 6.545 18 C -0.114 4.114 19 S -0.169 6.169 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.264 1.264 26 H -0.261 1.261 27 H -0.234 1.234 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.409 0.591 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.413 0.587 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.370 -5.766 -13.597 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.038 3.962 4 H 0.101 0.899 5 C -0.001 4.001 6 N -0.374 5.374 7 C 0.332 3.668 8 O -0.450 6.450 9 C -0.266 4.266 10 C 0.000 4.000 11 C -0.185 4.185 12 C -0.149 4.149 13 C -0.209 4.209 14 C -0.196 4.196 15 N -0.365 5.365 16 C 0.326 3.674 17 O -0.422 6.422 18 C -0.265 4.265 19 S 0.057 5.943 20 C -0.676 4.676 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.556 5.556 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.185 1.185 27 H -0.158 1.158 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.164 0.836 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.250 0.750 46 H 0.125 0.875 47 H 0.131 0.869 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.520 -6.390 -15.145 28.694 hybrid contribution -0.277 0.473 1.721 1.806 sum 23.242 -5.918 -13.424 27.485 Atomic orbital electron populations 1.21740 0.96188 1.00708 1.01461 1.21863 0.95593 0.94872 1.04029 1.21272 0.93231 0.94594 0.87120 0.89882 1.21561 0.91228 0.83734 1.03531 1.45889 1.07428 1.10054 1.74043 1.18875 0.81945 0.89924 0.76026 1.90758 1.56093 1.47445 1.50738 1.22493 0.96806 0.95456 1.11843 1.22105 0.93156 0.96277 0.88459 1.21114 1.02999 0.90546 1.03873 1.21250 0.91506 0.98489 1.03677 1.23261 0.93816 1.02690 1.01158 1.22807 1.02991 1.01474 0.92364 1.45825 1.15707 1.57626 1.17305 1.19750 0.81973 0.77665 0.88019 1.90720 1.51695 1.58968 1.40799 1.23289 0.99893 1.03867 0.99455 1.84659 1.17371 1.72445 1.19781 1.22486 1.04874 1.41550 0.98738 0.92117 1.25581 1.00214 0.93395 0.96950 1.70019 1.27895 1.36650 1.21045 0.85860 0.79980 0.79094 0.81380 1.18872 1.18531 1.15820 0.94638 0.93707 0.92479 0.88868 0.90406 0.89675 0.90347 0.75550 0.83589 0.89126 0.89858 0.89695 0.87959 0.86772 0.88148 0.89361 0.88658 0.75029 0.87495 0.86912 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.51 71.98 0.61 -2.84 16 2 C -0.12 -2.12 5.61 30.59 0.17 -1.95 16 3 C 0.14 2.51 2.42 44.99 0.11 2.62 16 4 H 0.08 1.77 7.58 -2.38 -0.02 1.75 16 5 C 0.12 1.89 5.23 86.38 0.45 2.34 16 6 N -0.72 -11.86 5.38 -466.70 -2.51 -14.38 16 7 C 0.54 10.93 7.67 86.57 0.66 11.60 16 8 O -0.57 -14.65 13.45 -4.08 -0.05 -14.71 16 9 C -0.25 -4.01 9.63 23.43 0.23 -3.79 16 10 C 0.00 0.03 5.80 -17.62 -0.10 -0.07 16 11 C -0.13 -1.17 9.45 71.24 0.67 -0.50 16 12 C -0.13 -2.30 4.12 -11.54 -0.05 -2.35 16 13 C -0.17 -2.14 9.78 30.60 0.30 -1.85 16 14 C -0.16 -2.52 10.22 30.59 0.31 -2.20 16 15 N -0.71 -14.19 4.47 -442.54 -1.98 -16.16 16 16 C 0.54 16.29 6.42 87.65 0.56 16.85 16 17 O -0.54 -20.36 13.00 -3.03 -0.04 -20.40 16 18 C -0.11 -3.99 6.16 71.23 0.44 -3.55 16 19 S -0.17 -8.18 18.55 -56.49 -1.05 -9.23 16 20 C -0.53 -30.16 10.04 67.95 0.68 -29.47 16 21 H 0.06 3.67 8.03 -2.91 -0.02 3.64 16 22 C 0.04 2.54 5.50 84.86 0.47 3.01 16 23 N -0.92 -55.41 13.97 21.65 0.30 -55.11 16 24 Si 0.91 44.33 27.74 68.60 1.90 46.23 16 25 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.23 -11.24 6.74 99.48 0.67 -10.57 16 28 H 0.03 1.05 5.64 -2.39 -0.01 1.04 16 29 H 0.04 1.21 7.85 -2.38 -0.02 1.19 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.41 6.07 8.12 -92.71 -0.75 5.32 16 36 H 0.15 1.79 8.04 -2.91 -0.02 1.77 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.64 8.06 -2.39 -0.02 0.62 16 39 H 0.08 0.61 6.44 -2.38 -0.02 0.60 16 40 H 0.10 2.32 6.62 -2.39 -0.02 2.30 16 41 H 0.11 1.00 6.35 -2.39 -0.02 0.99 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.41 6.40 8.60 -92.71 -0.80 5.60 16 46 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 47 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 48 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -73.82 403.27 1.48 -72.34 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.61 Total: 23.57 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.52 Total: -12.16 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -4.19 Total: -85.65 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.09 Total: -35.11 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.05 Total: -9.23 kcal Total: -73.82 1.48 -72.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498941676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.091 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds