Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46838 * 2 1 4 4 H 1.09002 * 109.47449 * 304.99302 * 3 2 1 5 5 C 1.53009 * 109.47148 * 184.99857 * 3 2 1 6 6 N 1.46495 * 109.47264 * 184.99848 * 5 3 2 7 7 C 1.34781 * 119.99738 * 179.97438 * 6 5 3 8 8 O 1.21610 * 119.99882 * 0.02562 * 7 6 5 9 9 C 1.47099 * 119.99839 * 179.97438 * 7 6 5 10 10 C 1.32992 * 119.99932 * 173.76881 * 9 7 6 11 11 C 1.50694 * 120.00203 * 353.10568 * 10 9 7 12 12 C 1.50708 * 119.99819 * 173.10471 * 10 9 7 13 13 C 1.52997 * 117.49594 * 188.75003 * 12 10 9 14 14 C 1.53003 * 117.49739 * 120.08975 * 12 10 9 15 15 N 1.46498 * 109.47430 * 65.00080 * 3 2 1 16 16 C 1.34782 * 119.99544 * 274.99605 * 15 3 2 17 17 O 1.21273 * 120.00475 * 0.02562 * 16 15 3 18 18 C 1.50706 * 119.99691 * 179.97438 * 16 15 3 19 19 S 1.80996 * 109.47164 * 180.02562 * 18 16 15 20 20 C 1.76193 * 100.00185 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99982 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00285 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99831 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47046 * 60.00461 * 24 22 20 26 26 H 1.48507 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47484 * 300.00620 * 24 22 20 28 28 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47319 * 299.99928 * 1 2 3 30 30 H 1.08997 * 109.47235 * 60.00441 * 1 2 3 31 31 H 1.08999 * 109.47180 * 239.99541 * 2 1 3 32 32 H 1.09003 * 109.47014 * 119.99938 * 2 1 3 33 33 H 1.09001 * 109.46468 * 64.99464 * 5 3 2 34 34 H 1.08996 * 109.46589 * 305.00250 * 5 3 2 35 35 H 0.96995 * 119.99797 * 359.97438 * 6 5 3 36 36 H 1.07998 * 119.99938 * 353.49587 * 9 7 6 37 37 H 1.09002 * 109.47265 * 84.53551 * 11 10 9 38 38 H 1.08994 * 109.47258 * 204.53363 * 11 10 9 39 39 H 1.09007 * 109.47064 * 324.53290 * 11 10 9 40 40 H 1.08996 * 115.55022 * 334.41883 * 12 10 9 41 41 H 1.09002 * 117.50338 * 359.97438 * 13 12 10 42 42 H 1.09002 * 117.50046 * 145.02182 * 13 12 10 43 43 H 1.08994 * 117.49543 * 214.97982 * 14 12 10 44 44 H 1.09003 * 117.49610 * 359.97337 * 14 12 10 45 45 H 0.96995 * 120.00093 * 95.00157 * 15 3 2 46 46 H 1.09000 * 109.46709 * 300.00442 * 18 16 15 47 47 H 1.09003 * 109.46845 * 59.99917 * 18 16 15 48 48 H 0.97002 * 119.99650 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3858 3.0629 -0.0858 8 8 6.1656 2.1458 -0.2577 9 6 5.8860 4.4411 0.0338 10 6 7.1949 4.6718 0.0796 11 6 8.1608 3.5183 0.1657 12 6 7.7123 6.0869 0.0453 13 6 9.2220 6.2835 -0.1060 14 6 8.5441 6.5640 1.2376 15 7 1.6524 2.0975 1.2518 16 6 0.4351 2.6644 1.3668 17 8 -0.3396 2.6319 0.4343 18 6 0.0361 3.3377 2.6547 19 16 -1.6427 3.9953 2.4969 20 6 -1.8450 4.7052 4.0968 21 1 -1.0448 4.6446 4.8195 22 6 -3.0322 5.3433 4.4279 23 7 -4.0073 5.4177 3.5468 24 14 -3.2464 6.0966 6.1238 25 1 -2.2083 7.1366 6.3381 26 1 -4.5936 6.7130 6.2252 27 1 -3.1076 5.0386 7.1565 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8499 1.0376 -1.0960 34 1 3.9954 0.8312 0.6659 35 1 3.4409 3.5483 0.1308 36 1 5.1903 5.2659 0.0801 37 1 8.3615 3.1369 -0.8355 38 1 9.0923 3.8574 0.6187 39 1 7.7272 2.7261 0.7762 40 1 7.0592 6.8146 -0.4362 41 1 9.8412 5.3895 -0.1803 42 1 9.5622 7.1410 -0.6866 43 1 8.4385 7.6057 1.5401 44 1 8.7167 5.8545 2.0469 45 1 2.2719 2.1232 1.9977 46 1 0.0672 2.6130 3.4683 47 1 0.7276 4.1530 2.8678 48 1 -4.8372 5.8634 3.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498941677.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = -44.137837 kcal Electronic energy + Delta-G solvation = -26545.188102 eV Core-core repulsion = 22727.231659 eV Total energy + Delta-G solvation = -3817.956442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31252 -39.53851 -38.26930 -36.49877 -34.07387 -33.43705 -32.46484 -32.42339 -29.66843 -28.67021 -27.49041 -25.51250 -24.71703 -23.05580 -22.77678 -21.49565 -20.64331 -20.37574 -18.92193 -17.86489 -17.19245 -16.83259 -16.65700 -15.97283 -15.72133 -15.34569 -15.10716 -14.94136 -14.82835 -14.23293 -13.82787 -13.67752 -13.58783 -13.37852 -13.24618 -13.08168 -12.87548 -12.52610 -12.34312 -12.22293 -11.92539 -11.76869 -11.66706 -11.45920 -11.30469 -11.20336 -11.06505 -11.05951 -10.86872 -10.80980 -10.76524 -9.84830 -9.81224 -9.46891 -9.39282 -9.08874 -9.05285 -8.91734 -8.27717 -6.53093 -6.24401 -3.95122 1.03967 2.89879 2.99739 3.02620 3.08130 3.21378 3.25726 3.29068 3.50110 3.67090 4.15136 4.17956 4.41099 4.41556 4.48162 4.61756 4.76750 4.88193 4.95705 5.01994 5.10814 5.11618 5.18464 5.24856 5.31670 5.42273 5.43647 5.45549 5.51290 5.58810 5.64796 5.67005 5.77398 5.79603 5.83337 5.88349 6.04263 6.10132 6.17988 6.19286 6.22749 6.27693 6.56375 6.62643 7.32242 7.56556 7.63768 8.04873 8.32187 8.55757 9.21044 10.82865 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.002431 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.621861 B =11516.218203 C =14075.885473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.095 0.905 5 C 0.114 3.886 6 N -0.726 5.726 7 C 0.547 3.453 8 O -0.544 6.544 9 C -0.230 4.230 10 C 0.003 3.997 11 C -0.125 4.125 12 C -0.136 4.136 13 C -0.172 4.172 14 C -0.165 4.165 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.277 -3.626 -6.885 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.113 0.887 5 C -0.010 4.010 6 N -0.378 5.378 7 C 0.338 3.662 8 O -0.424 6.424 9 C -0.251 4.251 10 C 0.001 3.999 11 C -0.181 4.181 12 C -0.154 4.154 13 C -0.209 4.209 14 C -0.202 4.202 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.382 6.382 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.241 0.759 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.313 -4.283 -8.622 25.223 hybrid contribution 0.554 0.985 2.621 2.855 sum 23.867 -3.298 -6.001 24.830 Atomic orbital electron populations 1.21806 0.94011 1.00715 1.03854 1.21878 0.97798 0.94982 1.02170 1.21247 0.92422 0.94685 0.88759 0.88662 1.21655 0.92700 0.83600 1.03050 1.45899 1.07615 1.09905 1.74348 1.18496 0.81917 0.89304 0.76516 1.90754 1.55389 1.46733 1.49551 1.22274 0.96233 0.95841 1.10774 1.21782 0.94273 0.94187 0.89694 1.21178 0.97134 0.96202 1.03619 1.21312 0.94712 0.94678 1.04680 1.23086 0.93741 1.03816 1.00250 1.23007 1.02937 1.02540 0.91754 1.46122 1.17425 1.59447 1.16130 1.20260 0.80784 0.77470 0.89585 1.90719 1.50259 1.57163 1.40072 1.23550 1.07061 1.02827 0.97127 1.85371 1.06366 1.70945 1.20411 1.22821 1.03928 1.42233 0.99512 0.91025 1.24984 0.94844 0.95545 0.98171 1.70005 1.05013 1.40966 1.34287 0.86234 0.77534 0.79263 0.82532 1.19938 1.20804 1.19947 0.93589 0.91744 0.92003 0.91192 0.91725 0.90102 0.90890 0.75949 0.85427 0.90184 0.92622 0.89070 0.86472 0.88006 0.88217 0.88077 0.88348 0.76785 0.89337 0.89344 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.51 37.16 0.32 -1.64 16 2 C -0.13 -1.32 5.61 -26.73 -0.15 -1.47 16 3 C 0.13 1.40 2.41 -67.93 -0.16 1.23 16 4 H 0.10 1.16 7.58 -51.93 -0.39 0.76 16 5 C 0.11 1.04 5.23 -4.04 -0.02 1.02 16 6 N -0.73 -6.86 5.38 -61.49 -0.33 -7.19 16 7 C 0.55 5.97 7.61 -12.66 -0.10 5.87 16 8 O -0.54 -7.26 13.28 5.27 0.07 -7.19 16 9 C -0.23 -2.13 9.67 -37.81 -0.37 -2.50 16 10 C 0.00 0.02 5.81 -101.17 -0.59 -0.57 16 11 C -0.13 -1.11 7.90 36.00 0.28 -0.82 16 12 C -0.14 -0.95 6.01 -91.77 -0.55 -1.50 16 13 C -0.17 -0.99 9.77 -26.69 -0.26 -1.25 16 14 C -0.17 -0.99 10.10 -26.69 -0.27 -1.26 16 15 N -0.74 -8.60 4.47 -53.80 -0.24 -8.84 16 16 C 0.53 8.89 6.42 -10.98 -0.07 8.82 16 17 O -0.51 -10.26 13.00 5.56 0.07 -10.19 16 18 C -0.15 -2.94 6.16 36.01 0.22 -2.71 16 19 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 24 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.04 5.64 -51.93 -0.29 0.75 16 30 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.41 3.60 8.12 -40.82 -0.33 3.27 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.08 0.75 8.05 -51.93 -0.42 0.34 16 38 H 0.05 0.39 6.31 -51.93 -0.33 0.06 16 39 H 0.09 0.97 6.12 -51.93 -0.32 0.65 16 40 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.56 6.42 -51.93 -0.33 0.23 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 46 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 47 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 48 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -33.62 405.43 -10.13 -43.74 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.79 Total: 5.68 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.52 Total: -9.46 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.16 Total: -41.07 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.14 Total: -17.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.62 -10.13 -43.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498941677.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.393 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds