Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46838 * 2 1 4 4 H 1.09002 * 109.47449 * 304.99302 * 3 2 1 5 5 C 1.53009 * 109.47148 * 184.99857 * 3 2 1 6 6 N 1.46495 * 109.47264 * 184.99848 * 5 3 2 7 7 C 1.34781 * 119.99738 * 179.97438 * 6 5 3 8 8 O 1.21610 * 119.99882 * 0.02562 * 7 6 5 9 9 C 1.47099 * 119.99839 * 179.97438 * 7 6 5 10 10 C 1.32992 * 119.99932 * 173.76881 * 9 7 6 11 11 C 1.50694 * 120.00203 * 353.10568 * 10 9 7 12 12 C 1.50708 * 119.99819 * 173.10471 * 10 9 7 13 13 C 1.52997 * 117.49594 * 188.75003 * 12 10 9 14 14 C 1.53003 * 117.49739 * 120.08975 * 12 10 9 15 15 N 1.46498 * 109.47430 * 65.00080 * 3 2 1 16 16 C 1.34782 * 119.99544 * 274.99605 * 15 3 2 17 17 O 1.21273 * 120.00475 * 0.02562 * 16 15 3 18 18 C 1.50706 * 119.99691 * 179.97438 * 16 15 3 19 19 S 1.80996 * 109.47164 * 180.02562 * 18 16 15 20 20 C 1.76193 * 100.00185 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99982 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00285 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99831 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47046 * 60.00461 * 24 22 20 26 26 H 1.48507 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47484 * 300.00620 * 24 22 20 28 28 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47319 * 299.99928 * 1 2 3 30 30 H 1.08997 * 109.47235 * 60.00441 * 1 2 3 31 31 H 1.08999 * 109.47180 * 239.99541 * 2 1 3 32 32 H 1.09003 * 109.47014 * 119.99938 * 2 1 3 33 33 H 1.09001 * 109.46468 * 64.99464 * 5 3 2 34 34 H 1.08996 * 109.46589 * 305.00250 * 5 3 2 35 35 H 0.96995 * 119.99797 * 359.97438 * 6 5 3 36 36 H 1.07998 * 119.99938 * 353.49587 * 9 7 6 37 37 H 1.09002 * 109.47265 * 84.53551 * 11 10 9 38 38 H 1.08994 * 109.47258 * 204.53363 * 11 10 9 39 39 H 1.09007 * 109.47064 * 324.53290 * 11 10 9 40 40 H 1.08996 * 115.55022 * 334.41883 * 12 10 9 41 41 H 1.09002 * 117.50338 * 359.97438 * 13 12 10 42 42 H 1.09002 * 117.50046 * 145.02182 * 13 12 10 43 43 H 1.08994 * 117.49543 * 214.97982 * 14 12 10 44 44 H 1.09003 * 117.49610 * 359.97337 * 14 12 10 45 45 H 0.96995 * 120.00093 * 95.00157 * 15 3 2 46 46 H 1.09000 * 109.46709 * 300.00442 * 18 16 15 47 47 H 1.09003 * 109.46845 * 59.99917 * 18 16 15 48 48 H 0.97002 * 119.99650 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3858 3.0629 -0.0858 8 8 6.1656 2.1458 -0.2577 9 6 5.8860 4.4411 0.0338 10 6 7.1949 4.6718 0.0796 11 6 8.1608 3.5183 0.1657 12 6 7.7123 6.0869 0.0453 13 6 9.2220 6.2835 -0.1060 14 6 8.5441 6.5640 1.2376 15 7 1.6524 2.0975 1.2518 16 6 0.4351 2.6644 1.3668 17 8 -0.3396 2.6319 0.4343 18 6 0.0361 3.3377 2.6547 19 16 -1.6427 3.9953 2.4969 20 6 -1.8450 4.7052 4.0968 21 1 -1.0448 4.6446 4.8195 22 6 -3.0322 5.3433 4.4279 23 7 -4.0073 5.4177 3.5468 24 14 -3.2464 6.0966 6.1238 25 1 -2.2083 7.1366 6.3381 26 1 -4.5936 6.7130 6.2252 27 1 -3.1076 5.0386 7.1565 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8499 1.0376 -1.0960 34 1 3.9954 0.8312 0.6659 35 1 3.4409 3.5483 0.1308 36 1 5.1903 5.2659 0.0801 37 1 8.3615 3.1369 -0.8355 38 1 9.0923 3.8574 0.6187 39 1 7.7272 2.7261 0.7762 40 1 7.0592 6.8146 -0.4362 41 1 9.8412 5.3895 -0.1803 42 1 9.5622 7.1410 -0.6866 43 1 8.4385 7.6057 1.5401 44 1 8.7167 5.8545 2.0469 45 1 2.2719 2.1232 1.9977 46 1 0.0672 2.6130 3.4683 47 1 0.7276 4.1530 2.8678 48 1 -4.8372 5.8634 3.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498941677.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = -65.875564 kcal Electronic energy + Delta-G solvation = -26546.130720 eV Core-core repulsion = 22727.231659 eV Total energy + Delta-G solvation = -3818.899061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26587 -40.61918 -38.87236 -37.55324 -34.98142 -34.57320 -34.10836 -33.59624 -30.84820 -29.77424 -28.31321 -27.63088 -25.47251 -23.82891 -23.21698 -22.55170 -21.60399 -21.37864 -19.88480 -19.50503 -18.03068 -17.91934 -17.62191 -16.94545 -16.86625 -16.73712 -16.31894 -16.15645 -15.83778 -15.55379 -14.91032 -14.66684 -14.62775 -14.51520 -14.39497 -14.03126 -13.89444 -13.65614 -13.46231 -13.15775 -12.99349 -12.87372 -12.81363 -12.64228 -12.49287 -12.45271 -12.23064 -12.13923 -11.84481 -11.77803 -11.71055 -11.34884 -11.12138 -10.84361 -10.63878 -10.25387 -10.21528 -10.04682 -9.74147 -8.63545 -8.33822 -6.10599 0.33223 1.28150 1.43552 1.47374 1.57031 1.67497 2.15395 2.24635 2.28121 2.36599 3.00277 3.00354 3.33820 3.55739 3.56321 3.87642 3.95334 3.98686 4.01612 4.11475 4.13366 4.16503 4.31061 4.33477 4.40512 4.52758 4.56037 4.65537 4.69965 4.76290 4.82695 4.84469 4.94062 4.99008 5.05822 5.09295 5.14202 5.18472 5.24633 5.42233 5.42519 5.49119 5.51848 5.54704 5.57613 6.20282 6.51176 6.54202 7.07862 7.23962 7.29750 8.74785 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.002431 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.621861 B =11516.218203 C =14075.885473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.141 3.859 4 H 0.080 0.920 5 C 0.124 3.876 6 N -0.721 5.721 7 C 0.544 3.456 8 O -0.573 6.573 9 C -0.245 4.245 10 C 0.006 3.994 11 C -0.122 4.122 12 C -0.149 4.149 13 C -0.166 4.166 14 C -0.163 4.163 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.548 6.548 18 C -0.132 4.132 19 S -0.144 6.144 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.141 0.859 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.413 0.587 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.713 -3.438 -5.697 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.036 3.964 4 H 0.098 0.902 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.336 3.664 8 O -0.455 6.455 9 C -0.265 4.265 10 C 0.004 3.996 11 C -0.178 4.178 12 C -0.167 4.167 13 C -0.203 4.203 14 C -0.199 4.199 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.425 6.425 18 C -0.284 4.284 19 S 0.083 5.917 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.159 0.841 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.249 0.751 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.789 -4.109 -7.425 27.149 hybrid contribution -0.088 0.856 2.188 2.351 sum 25.701 -3.253 -5.237 26.430 Atomic orbital electron populations 1.21738 0.96388 1.00649 1.01338 1.21857 0.95385 0.94881 1.04110 1.21267 0.93295 0.94605 0.87199 0.90208 1.21584 0.91143 0.83627 1.03702 1.45877 1.07370 1.10164 1.73838 1.18769 0.81974 0.89684 0.76021 1.90744 1.56051 1.47634 1.51071 1.22352 0.96832 0.95357 1.11994 1.21988 0.94126 0.95076 0.88410 1.21101 0.97902 0.95848 1.02907 1.21362 0.95674 0.93719 1.05969 1.23182 0.92684 1.04345 1.00101 1.23080 1.02199 1.03058 0.91609 1.45830 1.15732 1.57781 1.17213 1.19853 0.81847 0.77589 0.88213 1.90720 1.51813 1.58898 1.41021 1.23394 1.02262 1.03673 0.99038 1.85515 1.12947 1.71991 1.21206 1.23172 1.04438 1.42118 0.99777 0.90111 1.26085 0.94402 0.95945 1.02653 1.70171 1.05660 1.42127 1.36737 0.85051 0.77726 0.78595 0.76934 1.18629 1.20478 1.18824 0.92403 0.94832 0.93939 0.88771 0.90235 0.89539 0.90047 0.75540 0.84100 0.90957 0.90887 0.90913 0.85904 0.87841 0.86982 0.87049 0.88515 0.75061 0.87859 0.87364 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.51 71.98 0.61 -3.18 16 2 C -0.12 -2.28 5.61 30.59 0.17 -2.11 16 3 C 0.14 2.72 2.41 44.99 0.11 2.82 16 4 H 0.08 1.88 7.58 -2.39 -0.02 1.86 16 5 C 0.12 1.99 5.23 86.38 0.45 2.45 16 6 N -0.72 -12.51 5.38 -466.71 -2.51 -15.02 16 7 C 0.54 11.28 7.61 86.57 0.66 11.94 16 8 O -0.57 -14.85 13.28 -4.06 -0.05 -14.91 16 9 C -0.24 -4.25 9.67 23.43 0.23 -4.03 16 10 C 0.01 0.10 5.81 -17.62 -0.10 -0.01 16 11 C -0.12 -2.05 7.90 71.23 0.56 -1.49 16 12 C -0.15 -1.82 6.01 -11.54 -0.07 -1.89 16 13 C -0.17 -1.56 9.77 30.62 0.30 -1.26 16 14 C -0.16 -1.62 10.10 30.62 0.31 -1.31 16 15 N -0.71 -15.48 4.47 -442.53 -1.98 -17.45 16 16 C 0.54 17.78 6.42 87.66 0.56 18.34 16 17 O -0.55 -22.64 13.00 -3.01 -0.04 -22.68 16 18 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 19 S -0.14 -7.71 20.57 -56.49 -1.16 -8.87 16 20 C -0.55 -30.65 9.50 67.95 0.65 -30.00 16 21 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 24 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 1.08 5.64 -2.39 -0.01 1.07 16 30 H 0.04 1.26 7.85 -2.39 -0.02 1.24 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.41 6.62 8.12 -92.71 -0.75 5.87 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.07 0.93 6.31 -2.39 -0.02 0.91 16 39 H 0.07 1.53 6.12 -2.38 -0.01 1.51 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.10 0.93 6.42 -2.39 -0.02 0.92 16 42 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.41 6.89 8.60 -92.71 -0.80 6.09 16 46 H 0.10 3.55 8.14 -2.40 -0.02 3.53 16 47 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 48 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -75.37 405.43 1.34 -74.03 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.57 Total: 27.77 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 5.34 Total: -12.95 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -4.20 Total: -87.46 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.09 Total: -37.59 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.16 Total: -8.87 kcal Total: -75.37 1.34 -74.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498941677.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.156 kcal (2) G-P(sol) polarization free energy of solvation -75.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds