Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 H 1.09005 * 109.46952 * 55.00413 * 3 2 1 5 5 C 1.52998 * 109.47310 * 175.00314 * 3 2 1 6 6 N 1.46501 * 109.47453 * 175.00158 * 5 3 2 7 7 C 1.34771 * 120.00191 * 179.97438 * 6 5 3 8 8 O 1.21616 * 119.99946 * 0.02562 * 7 6 5 9 9 C 1.47106 * 120.00013 * 179.97438 * 7 6 5 10 10 C 1.32995 * 119.99836 * 174.11993 * 9 7 6 11 11 C 1.50701 * 120.00162 * 4.28952 * 10 9 7 12 12 C 1.50699 * 119.99710 * 184.28634 * 10 9 7 13 13 C 1.53000 * 117.49897 * 184.38161 * 12 10 9 14 14 C 1.53006 * 117.49419 * 115.72335 * 12 10 9 15 15 N 1.46498 * 109.47405 * 295.00396 * 3 2 1 16 16 C 1.34775 * 120.00099 * 84.99759 * 15 3 2 17 17 O 1.21283 * 119.99809 * 359.97438 * 16 15 3 18 18 C 1.50697 * 120.00096 * 180.02562 * 16 15 3 19 19 S 1.81008 * 109.47350 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99956 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00168 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99581 * 180.02562 * 20 19 18 23 23 N 1.31637 * 120.00238 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99830 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46992 * 89.99704 * 24 22 20 26 26 H 1.48500 * 109.46927 * 209.99762 * 24 22 20 27 27 H 1.48497 * 109.47054 * 329.99758 * 24 22 20 28 28 H 1.09001 * 109.47553 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47398 * 59.99510 * 1 2 3 30 30 H 1.09003 * 109.47190 * 299.99621 * 1 2 3 31 31 H 1.08999 * 109.47398 * 120.00490 * 2 1 3 32 32 H 1.09011 * 109.46629 * 240.00178 * 2 1 3 33 33 H 1.09001 * 109.46953 * 295.00029 * 5 3 2 34 34 H 1.09001 * 109.47150 * 55.00296 * 5 3 2 35 35 H 0.97000 * 119.99662 * 359.97438 * 6 5 3 36 36 H 1.07998 * 119.99962 * 354.11689 * 9 7 6 37 37 H 1.08998 * 109.47223 * 64.20854 * 11 10 9 38 38 H 1.08997 * 109.47091 * 184.21202 * 11 10 9 39 39 H 1.09003 * 109.47147 * 304.21272 * 11 10 9 40 40 H 1.09001 * 115.55485 * 330.05651 * 12 10 9 41 41 H 1.09007 * 117.49538 * 0.02562 * 13 12 10 42 42 H 1.09000 * 117.49817 * 145.02450 * 13 12 10 43 43 H 1.08996 * 117.49652 * 214.97419 * 14 12 10 44 44 H 1.08994 * 117.50167 * 359.97438 * 14 12 10 45 45 H 0.97004 * 120.00410 * 265.00191 * 15 3 2 46 46 H 1.09000 * 109.47242 * 299.99951 * 18 16 15 47 47 H 1.09004 * 109.47535 * 59.99825 * 18 16 15 48 48 H 0.96999 * 119.99728 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 4.0631 2.8167 0.0059 7 6 5.3857 3.0629 0.0867 8 8 6.1656 2.1457 0.2586 9 6 5.8860 4.4410 -0.0340 10 6 7.1758 4.6997 0.1618 11 6 8.1414 3.5700 0.4119 12 6 7.6716 6.1225 0.1336 13 6 9.1793 6.3479 0.2631 14 6 8.2503 6.6947 1.4293 15 7 1.6524 2.0975 -1.2517 16 6 0.4351 2.6644 -1.3668 17 8 -0.3396 2.6319 -0.4342 18 6 0.0362 3.3378 -2.6546 19 16 -1.6428 3.9954 -2.4968 20 6 -1.8443 4.7067 -4.0962 21 1 -1.0442 4.6459 -4.8190 22 6 -3.0315 5.3452 -4.4271 23 7 -4.0069 5.4189 -3.5462 24 14 -3.2455 6.0987 -6.1230 25 1 -3.8219 5.0872 -7.0449 26 1 -4.1597 7.2656 -6.0343 27 1 -1.9252 6.5423 -6.6378 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 3.8499 1.0376 1.0959 34 1 3.9954 0.8311 -0.6661 35 1 3.4411 3.5482 -0.1315 36 1 5.2060 5.2426 -0.2818 37 1 8.1914 2.9326 -0.4709 38 1 9.1303 3.9773 0.6225 39 1 7.8009 2.9831 1.2650 40 1 7.1148 6.8017 -0.5120 41 1 9.8127 5.4670 0.3683 42 1 9.6144 7.1756 -0.2970 43 1 8.0747 7.7504 1.6358 44 1 8.2720 6.0422 2.3021 45 1 2.2718 2.1232 -1.9978 46 1 0.7276 4.1531 -2.8677 47 1 0.0672 2.6132 -3.4684 48 1 -4.8367 5.8648 -3.7777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498941701.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = -43.762280 kcal Electronic energy + Delta-G solvation = -26523.993881 eV Core-core repulsion = 22706.053724 eV Total energy + Delta-G solvation = -3817.940157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30167 -39.53398 -38.27550 -36.49379 -34.06913 -33.43454 -32.46548 -32.42382 -29.67154 -28.67723 -27.50143 -25.51495 -24.72022 -23.06410 -22.77770 -21.49455 -20.63675 -20.37428 -18.91548 -17.86621 -17.20121 -16.82913 -16.66594 -15.97799 -15.69892 -15.36977 -15.16907 -14.87174 -14.82866 -14.25175 -13.79580 -13.73028 -13.56730 -13.35022 -13.25744 -13.07693 -12.84200 -12.52633 -12.43297 -12.26824 -11.93454 -11.76407 -11.61207 -11.45154 -11.21901 -11.19732 -11.08375 -11.04805 -10.86005 -10.80599 -10.76262 -9.84026 -9.81282 -9.49685 -9.40375 -9.09694 -9.05656 -8.91737 -8.27420 -6.53176 -6.24721 -3.95327 1.05375 2.90099 2.99325 3.03122 3.08525 3.20210 3.26042 3.29837 3.48099 3.67268 4.15631 4.17658 4.41305 4.41929 4.47022 4.62459 4.73924 4.87744 4.94145 5.02058 5.10679 5.11558 5.14727 5.24805 5.33848 5.42534 5.43863 5.47069 5.55723 5.58753 5.64040 5.67531 5.77725 5.80749 5.83293 5.88418 6.04205 6.10074 6.16965 6.18429 6.22644 6.27391 6.56366 6.62616 7.32496 7.56718 7.63748 8.05159 8.32233 8.55744 9.20905 10.82587 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.002354 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.806360 B =11890.737145 C =14214.632383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.095 0.905 5 C 0.115 3.885 6 N -0.726 5.726 7 C 0.547 3.453 8 O -0.545 6.545 9 C -0.229 4.229 10 C 0.001 3.999 11 C -0.121 4.121 12 C -0.135 4.135 13 C -0.176 4.176 14 C -0.163 4.163 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.509 6.509 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.178 -3.522 8.168 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.113 0.887 5 C -0.010 4.010 6 N -0.378 5.378 7 C 0.337 3.663 8 O -0.425 6.425 9 C -0.250 4.250 10 C -0.001 4.001 11 C -0.177 4.177 12 C -0.153 4.153 13 C -0.213 4.213 14 C -0.200 4.200 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.382 6.382 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.240 0.760 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.220 -4.179 9.906 25.588 hybrid contribution 0.532 0.961 -2.734 2.947 sum 23.752 -3.218 7.171 25.019 Atomic orbital electron populations 1.21806 0.94011 1.00714 1.03855 1.21878 0.97797 0.94983 1.02169 1.21245 0.92423 0.94682 0.88758 0.88667 1.21651 0.92693 0.83598 1.03035 1.45887 1.07608 1.09891 1.74395 1.18497 0.81933 0.89365 0.76496 1.90772 1.55518 1.46648 1.49562 1.22279 0.96621 0.95881 1.10215 1.21784 0.94116 0.94091 0.90134 1.21138 0.96707 0.95798 1.04049 1.21285 0.97108 0.94336 1.02581 1.23157 0.92016 1.03830 1.02275 1.22993 1.03100 1.01859 0.92069 1.46123 1.17428 1.59438 1.16131 1.20259 0.80786 0.77473 0.89586 1.90721 1.50265 1.57171 1.40064 1.23549 1.07054 1.02827 0.97125 1.85379 1.06366 1.70910 1.20488 1.22862 1.03947 1.42084 0.99522 0.90974 1.24990 0.94857 0.95557 0.98167 1.70016 1.04983 1.41063 1.34202 0.86176 0.78239 0.78677 0.82462 1.20268 1.20746 1.19701 0.93588 0.91743 0.92005 0.91196 0.91722 0.90132 0.90879 0.75958 0.85461 0.89948 0.92587 0.89577 0.86454 0.87805 0.88243 0.88078 0.88401 0.76779 0.89342 0.89333 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.51 37.16 0.32 -1.64 16 2 C -0.13 -1.32 5.61 -26.73 -0.15 -1.47 16 3 C 0.13 1.40 2.42 -67.93 -0.16 1.24 16 4 H 0.10 1.16 7.58 -51.93 -0.39 0.76 16 5 C 0.11 1.05 5.23 -4.04 -0.02 1.03 16 6 N -0.73 -6.88 5.38 -61.49 -0.33 -7.21 16 7 C 0.55 5.97 7.72 -12.67 -0.10 5.87 16 8 O -0.54 -7.26 13.10 5.26 0.07 -7.19 16 9 C -0.23 -2.12 9.67 -37.80 -0.37 -2.48 16 10 C 0.00 0.01 5.81 -101.17 -0.59 -0.58 16 11 C -0.12 -1.07 8.22 36.01 0.30 -0.77 16 12 C -0.14 -0.94 6.00 -91.77 -0.55 -1.49 16 13 C -0.18 -1.00 9.86 -26.69 -0.26 -1.27 16 14 C -0.16 -0.97 10.24 -26.69 -0.27 -1.24 16 15 N -0.74 -8.61 4.47 -53.81 -0.24 -8.85 16 16 C 0.53 8.89 6.42 -10.99 -0.07 8.82 16 17 O -0.51 -10.27 13.00 5.55 0.07 -10.20 16 18 C -0.15 -2.94 6.16 36.00 0.22 -2.71 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 24 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.04 5.64 -51.93 -0.29 0.75 16 30 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.41 3.61 8.12 -40.82 -0.33 3.28 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.08 0.82 7.57 -51.93 -0.39 0.43 16 38 H 0.06 0.39 5.44 -51.93 -0.28 0.10 16 39 H 0.09 0.89 6.84 -51.93 -0.36 0.53 16 40 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.56 5.90 -51.93 -0.31 0.26 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.40 3.85 8.60 -40.82 -0.35 3.50 16 46 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 47 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -33.64 404.76 -10.08 -43.72 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.73 Total: 5.68 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.51 Total: -9.39 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.16 Total: -41.10 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.14 Total: -17.39 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.64 -10.08 -43.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498941701.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.043 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds