Wall clock time and date at job start Sat Apr 11 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 H 1.09005 * 109.46952 * 55.00413 * 3 2 1 5 5 C 1.52998 * 109.47310 * 175.00314 * 3 2 1 6 6 N 1.46501 * 109.47453 * 175.00158 * 5 3 2 7 7 C 1.34771 * 120.00191 * 179.97438 * 6 5 3 8 8 O 1.21616 * 119.99946 * 0.02562 * 7 6 5 9 9 C 1.47106 * 120.00013 * 179.97438 * 7 6 5 10 10 C 1.32995 * 119.99836 * 174.11993 * 9 7 6 11 11 C 1.50701 * 120.00162 * 4.28952 * 10 9 7 12 12 C 1.50699 * 119.99710 * 184.28634 * 10 9 7 13 13 C 1.53000 * 117.49897 * 184.38161 * 12 10 9 14 14 C 1.53006 * 117.49419 * 115.72335 * 12 10 9 15 15 N 1.46498 * 109.47405 * 295.00396 * 3 2 1 16 16 C 1.34775 * 120.00099 * 84.99759 * 15 3 2 17 17 O 1.21283 * 119.99809 * 359.97438 * 16 15 3 18 18 C 1.50697 * 120.00096 * 180.02562 * 16 15 3 19 19 S 1.81008 * 109.47350 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99956 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00168 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99581 * 180.02562 * 20 19 18 23 23 N 1.31637 * 120.00238 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99830 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46992 * 89.99704 * 24 22 20 26 26 H 1.48500 * 109.46927 * 209.99762 * 24 22 20 27 27 H 1.48497 * 109.47054 * 329.99758 * 24 22 20 28 28 H 1.09001 * 109.47553 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47398 * 59.99510 * 1 2 3 30 30 H 1.09003 * 109.47190 * 299.99621 * 1 2 3 31 31 H 1.08999 * 109.47398 * 120.00490 * 2 1 3 32 32 H 1.09011 * 109.46629 * 240.00178 * 2 1 3 33 33 H 1.09001 * 109.46953 * 295.00029 * 5 3 2 34 34 H 1.09001 * 109.47150 * 55.00296 * 5 3 2 35 35 H 0.97000 * 119.99662 * 359.97438 * 6 5 3 36 36 H 1.07998 * 119.99962 * 354.11689 * 9 7 6 37 37 H 1.08998 * 109.47223 * 64.20854 * 11 10 9 38 38 H 1.08997 * 109.47091 * 184.21202 * 11 10 9 39 39 H 1.09003 * 109.47147 * 304.21272 * 11 10 9 40 40 H 1.09001 * 115.55485 * 330.05651 * 12 10 9 41 41 H 1.09007 * 117.49538 * 0.02562 * 13 12 10 42 42 H 1.09000 * 117.49817 * 145.02450 * 13 12 10 43 43 H 1.08996 * 117.49652 * 214.97419 * 14 12 10 44 44 H 1.08994 * 117.50167 * 359.97438 * 14 12 10 45 45 H 0.97004 * 120.00410 * 265.00191 * 15 3 2 46 46 H 1.09000 * 109.47242 * 299.99951 * 18 16 15 47 47 H 1.09004 * 109.47535 * 59.99825 * 18 16 15 48 48 H 0.96999 * 119.99728 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 4.0631 2.8167 0.0059 7 6 5.3857 3.0629 0.0867 8 8 6.1656 2.1457 0.2586 9 6 5.8860 4.4410 -0.0340 10 6 7.1758 4.6997 0.1618 11 6 8.1414 3.5700 0.4119 12 6 7.6716 6.1225 0.1336 13 6 9.1793 6.3479 0.2631 14 6 8.2503 6.6947 1.4293 15 7 1.6524 2.0975 -1.2517 16 6 0.4351 2.6644 -1.3668 17 8 -0.3396 2.6319 -0.4342 18 6 0.0362 3.3378 -2.6546 19 16 -1.6428 3.9954 -2.4968 20 6 -1.8443 4.7067 -4.0962 21 1 -1.0442 4.6459 -4.8190 22 6 -3.0315 5.3452 -4.4271 23 7 -4.0069 5.4189 -3.5462 24 14 -3.2455 6.0987 -6.1230 25 1 -3.8219 5.0872 -7.0449 26 1 -4.1597 7.2656 -6.0343 27 1 -1.9252 6.5423 -6.6378 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 3.8499 1.0376 1.0959 34 1 3.9954 0.8311 -0.6661 35 1 3.4411 3.5482 -0.1315 36 1 5.2060 5.2426 -0.2818 37 1 8.1914 2.9326 -0.4709 38 1 9.1303 3.9773 0.6225 39 1 7.8009 2.9831 1.2650 40 1 7.1148 6.8017 -0.5120 41 1 9.8127 5.4670 0.3683 42 1 9.6144 7.1756 -0.2970 43 1 8.0747 7.7504 1.6358 44 1 8.2720 6.0422 2.3021 45 1 2.2718 2.1232 -1.9978 46 1 0.7276 4.1531 -2.8677 47 1 0.0672 2.6132 -3.4684 48 1 -4.8367 5.8648 -3.7777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498941701.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:00 Heat of formation + Delta-G solvation = -65.536050 kcal Electronic energy + Delta-G solvation = -26524.938063 eV Core-core repulsion = 22706.053724 eV Total energy + Delta-G solvation = -3818.884339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26056 -40.61092 -38.87935 -37.54987 -34.97816 -34.57435 -34.10702 -33.59762 -30.85040 -29.78247 -28.32768 -27.63447 -25.47595 -23.83461 -23.22223 -22.55234 -21.60309 -21.37354 -19.88596 -19.50013 -18.03463 -17.92674 -17.61718 -16.95414 -16.86887 -16.74192 -16.28120 -16.19403 -15.87184 -15.52099 -14.92503 -14.68274 -14.62624 -14.46501 -14.43840 -14.02760 -13.88251 -13.63879 -13.45532 -13.15506 -13.01097 -12.95842 -12.87100 -12.62788 -12.52086 -12.46549 -12.17212 -12.08719 -11.77916 -11.76153 -11.69661 -11.33799 -11.13742 -10.84343 -10.64337 -10.25528 -10.24428 -10.05016 -9.75378 -8.63638 -8.34195 -6.10834 0.34265 1.28161 1.42021 1.47640 1.57741 1.67394 2.15394 2.23887 2.28062 2.37276 2.98292 3.00030 3.33648 3.55671 3.56701 3.88558 3.95009 3.98657 4.01547 4.10940 4.13938 4.15097 4.27694 4.33381 4.40368 4.52730 4.56013 4.63400 4.67564 4.81097 4.84256 4.84774 4.94106 4.99251 5.05752 5.10109 5.13865 5.18370 5.25604 5.41768 5.42638 5.48908 5.49849 5.54810 5.58185 6.20331 6.51088 6.54181 7.07679 7.23956 7.29670 8.74650 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.002354 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.806360 B =11890.737145 C =14214.632383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.141 3.859 4 H 0.080 0.920 5 C 0.124 3.876 6 N -0.721 5.721 7 C 0.543 3.457 8 O -0.573 6.573 9 C -0.243 4.243 10 C 0.004 3.996 11 C -0.117 4.117 12 C -0.148 4.148 13 C -0.170 4.170 14 C -0.161 4.161 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.548 6.548 18 C -0.132 4.132 19 S -0.144 6.144 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.413 0.587 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.593 -3.306 7.044 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.036 3.964 4 H 0.098 0.902 5 C 0.000 4.000 6 N -0.373 5.373 7 C 0.335 3.665 8 O -0.456 6.456 9 C -0.264 4.264 10 C 0.002 3.998 11 C -0.173 4.173 12 C -0.166 4.166 13 C -0.206 4.206 14 C -0.198 4.198 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.425 6.425 18 C -0.284 4.284 19 S 0.083 5.917 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.182 1.182 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.113 0.887 45 H 0.249 0.751 46 H 0.126 0.874 47 H 0.122 0.878 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.674 -3.977 8.773 27.421 hybrid contribution -0.108 0.823 -2.308 2.453 sum 25.566 -3.154 6.464 26.559 Atomic orbital electron populations 1.21738 0.96383 1.00650 1.01341 1.21857 0.95389 0.94879 1.04108 1.21265 0.93289 0.94604 0.87200 0.90212 1.21581 0.91141 0.83620 1.03686 1.45865 1.07362 1.10152 1.73881 1.18777 0.81997 0.89757 0.76001 1.90761 1.56177 1.47549 1.51071 1.22364 0.97240 0.95395 1.11368 1.21987 0.93922 0.94987 0.88897 1.21061 0.97831 0.95648 1.02764 1.21336 0.98232 0.93356 1.03699 1.23249 0.91194 1.04282 1.01920 1.23068 1.02696 1.02381 0.91662 1.45831 1.15738 1.57775 1.17213 1.19853 0.81846 0.77591 0.88215 1.90723 1.51819 1.58906 1.41014 1.23393 1.02256 1.03675 0.99036 1.85522 1.12946 1.71952 1.21272 1.23203 1.04440 1.41977 0.99773 0.90115 1.26089 0.94419 0.95965 1.02638 1.70178 1.05652 1.42215 1.36663 0.84995 0.78715 0.77724 0.76819 1.19469 1.20342 1.18215 0.92400 0.94831 0.93937 0.88771 0.90240 0.89551 0.90065 0.75546 0.84100 0.91192 0.90732 0.91197 0.85842 0.87601 0.86996 0.86976 0.88695 0.75054 0.87362 0.87849 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.51 71.98 0.61 -3.18 16 2 C -0.12 -2.28 5.61 30.59 0.17 -2.11 16 3 C 0.14 2.72 2.42 44.99 0.11 2.83 16 4 H 0.08 1.88 7.58 -2.38 -0.02 1.86 16 5 C 0.12 2.00 5.23 86.38 0.45 2.46 16 6 N -0.72 -12.53 5.38 -466.71 -2.51 -15.05 16 7 C 0.54 11.28 7.72 86.57 0.67 11.95 16 8 O -0.57 -14.87 13.10 -4.08 -0.05 -14.92 16 9 C -0.24 -4.22 9.67 23.43 0.23 -4.00 16 10 C 0.00 0.06 5.81 -17.62 -0.10 -0.04 16 11 C -0.12 -1.99 8.22 71.24 0.59 -1.41 16 12 C -0.15 -1.80 6.00 -11.54 -0.07 -1.87 16 13 C -0.17 -1.57 9.86 30.62 0.30 -1.27 16 14 C -0.16 -1.61 10.24 30.62 0.31 -1.30 16 15 N -0.71 -15.49 4.47 -442.55 -1.98 -17.47 16 16 C 0.54 17.78 6.42 87.66 0.56 18.34 16 17 O -0.55 -22.65 13.00 -3.04 -0.04 -22.69 16 18 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 19 S -0.14 -7.72 20.57 -56.49 -1.16 -8.89 16 20 C -0.55 -30.59 9.50 67.95 0.65 -29.94 16 21 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.26 13.22 21.65 0.29 -54.98 16 24 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 1.08 5.64 -2.39 -0.01 1.07 16 30 H 0.04 1.26 7.85 -2.39 -0.02 1.24 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 6.63 8.12 -92.71 -0.75 5.88 16 36 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.07 1.37 7.57 -2.39 -0.02 1.35 16 38 H 0.07 0.94 5.44 -2.39 -0.01 0.92 16 39 H 0.07 1.43 6.84 -2.39 -0.02 1.42 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 0.93 5.90 -2.38 -0.01 0.91 16 42 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.41 6.90 8.60 -92.71 -0.80 6.10 16 46 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 47 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 48 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -75.43 404.76 1.38 -74.05 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.57 Total: 27.60 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 5.38 Total: -12.78 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -4.20 Total: -87.49 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.09 Total: -37.61 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.89 kcal Total: -75.43 1.38 -74.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498941701.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.518 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds