Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00549 * 2 1 4 4 N 1.46906 * 109.46991 * 124.99807 * 3 2 1 5 5 C 1.46852 * 110.99690 * 170.00129 * 4 3 2 6 6 C 1.53058 * 109.49772 * 174.11573 * 5 4 3 7 7 C 1.53026 * 109.27323 * 59.09536 * 6 5 4 8 8 C 1.53029 * 109.30991 * 302.43507 * 7 6 5 9 9 C 1.46846 * 110.99781 * 45.75607 * 4 3 2 10 10 C 1.53192 * 109.46631 * 182.53375 * 7 6 5 11 11 N 1.47171 * 108.40677 * 187.84769 * 10 7 6 12 12 C 1.34770 * 120.98822 * 230.41111 * 11 10 7 13 13 O 1.21289 * 119.99946 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00340 * 179.97438 * 12 11 10 15 15 S 1.81000 * 109.47320 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99943 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00164 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99870 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00038 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47365 * 59.99535 * 20 18 16 22 22 H 1.48492 * 109.47098 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46916 * 299.99670 * 20 18 16 24 24 C 1.47156 * 118.02525 * 50.38610 * 11 10 7 25 25 C 1.53296 * 108.39467 * 309.41164 * 24 11 10 26 26 O 1.42866 * 109.56966 * 62.54539 * 7 6 5 27 27 H 1.07998 * 120.00848 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99910 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99910 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46993 * 5.00471 * 3 2 1 31 31 H 1.08990 * 109.47475 * 245.00040 * 3 2 1 32 32 H 1.09002 * 109.46841 * 294.12582 * 5 4 3 33 33 H 1.08998 * 109.46603 * 54.11455 * 5 4 3 34 34 H 1.08999 * 109.50479 * 179.02521 * 6 5 4 35 35 H 1.08999 * 109.50514 * 299.15448 * 6 5 4 36 36 H 1.09001 * 109.50200 * 297.59929 * 8 7 6 37 37 H 1.08997 * 109.53773 * 177.50255 * 8 7 6 38 38 H 1.09001 * 109.46015 * 305.88441 * 9 4 3 39 39 H 1.08998 * 109.46287 * 65.86615 * 9 4 3 40 40 H 1.09002 * 109.67888 * 307.57341 * 10 7 6 41 41 H 1.08994 * 109.68050 * 68.11464 * 10 7 6 42 42 H 1.08994 * 109.47308 * 300.00814 * 14 12 11 43 43 H 1.09006 * 109.46582 * 60.00605 * 14 12 11 44 44 H 0.96996 * 120.00400 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.68023 * 69.14057 * 24 11 10 46 46 H 1.08995 * 109.67817 * 189.68650 * 24 11 10 47 47 H 1.08995 * 109.51256 * 172.29453 * 25 24 11 48 48 H 1.08998 * 109.51614 * 292.45693 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 3.9124 2.4753 1.0358 6 6 4.7681 2.5553 2.3023 7 6 5.5582 1.2544 2.4611 8 6 4.5852 0.0743 2.5112 9 6 3.7345 0.0666 1.2389 10 6 6.3679 1.3043 3.7605 11 7 7.2592 0.1337 3.7979 12 6 7.3073 -0.6675 4.8805 13 8 6.6091 -0.4288 5.8431 14 6 8.2277 -1.8607 4.8947 15 16 8.0642 -2.7302 6.4737 16 6 9.2166 -4.0392 6.2229 17 1 9.7631 -4.1069 5.2939 18 6 9.4212 -4.9840 7.2190 19 7 8.7548 -4.9017 8.3510 20 14 10.6436 -6.3714 6.9534 21 1 11.9945 -5.8023 6.7157 22 1 10.6773 -7.2387 8.1582 23 1 10.2310 -7.1758 5.7752 24 6 8.0959 -0.1362 2.6178 25 6 7.1988 -0.1197 1.3748 26 8 6.4468 1.0961 1.3536 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6213 1.4025 -0.9313 32 1 4.5593 2.3486 0.1677 33 1 3.3360 3.3942 0.9283 34 1 5.4600 3.3936 2.2217 35 1 4.1227 2.6972 3.1692 36 1 3.9371 0.1738 3.3819 37 1 5.1460 -0.8578 2.5796 38 1 3.0289 -0.7632 1.2788 39 1 4.3821 -0.0487 0.3697 40 1 6.9612 2.2183 3.7885 41 1 5.6922 1.2785 4.6153 42 1 7.9618 -2.5343 4.0801 43 1 9.2575 -1.5265 4.7684 44 1 8.8980 -5.5617 9.0472 45 1 8.8625 0.6333 2.5276 46 1 8.5667 -1.1141 2.7177 47 1 7.8168 -0.1812 0.4791 48 1 6.5168 -0.9693 1.4067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503692908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -42.190076 kcal Electronic energy + Delta-G solvation = -28229.673982 eV Core-core repulsion = 24411.802001 eV Total energy + Delta-G solvation = -3817.871981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97623 -39.03712 -37.74309 -34.98895 -34.45476 -32.63488 -32.45326 -31.21057 -29.81993 -29.27670 -27.01508 -25.53671 -24.83170 -24.03530 -23.40286 -21.84725 -19.95217 -19.51197 -19.09750 -17.77866 -16.93475 -16.69342 -16.40493 -15.77496 -15.63770 -15.28473 -15.14508 -15.06475 -14.82705 -14.60902 -14.26898 -13.99387 -13.71922 -13.46624 -13.29031 -13.03453 -12.66457 -12.58851 -12.41964 -12.15444 -12.05085 -11.84092 -11.71613 -11.49797 -11.30948 -11.18574 -11.06559 -11.05955 -10.79680 -10.77909 -10.42914 -9.99098 -9.84844 -9.83859 -9.39867 -9.08279 -8.54390 -8.40018 -8.26268 -6.53167 -6.23720 -3.94862 1.93024 2.81580 2.99688 3.21549 3.22602 3.27134 3.46209 3.54296 3.76499 4.17824 4.38908 4.42134 4.55135 4.60736 4.71953 4.79546 4.87073 4.93196 5.00462 5.05711 5.11266 5.12953 5.18556 5.28009 5.30509 5.37310 5.39522 5.45655 5.50560 5.54468 5.61000 5.62616 5.63634 5.73241 5.76747 5.78946 5.83516 5.97985 6.05481 6.06792 6.27732 6.42098 6.49333 6.80484 6.84249 7.00104 7.47397 7.56774 8.32427 8.49539 9.21287 10.83642 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002485 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.801934 B =11266.882782 C =11849.428170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 C 0.083 3.917 4 N -0.534 5.534 5 C 0.060 3.940 6 C -0.098 4.098 7 C 0.106 3.894 8 C -0.139 4.139 9 C 0.057 3.943 10 C 0.094 3.906 11 N -0.621 5.621 12 C 0.536 3.464 13 O -0.513 6.513 14 C -0.151 4.151 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.075 3.925 25 C 0.044 3.956 26 O -0.370 6.370 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 14.183 -20.186 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.176 4.176 3 C -0.044 4.044 4 N -0.259 5.259 5 C -0.068 4.068 6 C -0.136 4.136 7 C 0.066 3.934 8 C -0.177 4.177 9 C -0.070 4.070 10 C -0.030 4.030 11 N -0.359 5.359 12 C 0.324 3.676 13 O -0.387 6.387 14 C -0.301 4.301 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.049 4.049 25 C -0.033 4.033 26 O -0.289 6.289 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.008 14.650 -18.261 25.870 hybrid contribution 2.212 -1.583 -1.852 3.290 sum -8.796 13.067 -20.113 25.547 Atomic orbital electron populations 1.23831 0.95782 1.01953 1.00251 1.22951 0.96149 0.98152 1.00309 1.21227 0.95064 0.96165 0.91983 1.62100 1.18897 1.03177 1.41709 1.22007 0.93802 0.93611 0.97357 1.21539 0.97529 0.95358 0.99212 1.21828 0.89010 0.96230 0.86306 1.22120 0.97730 0.98695 0.99114 1.22097 0.95781 0.92088 0.97064 1.22168 0.93763 0.88362 0.98669 1.48116 1.43098 1.28327 1.16320 1.20344 0.82728 0.83020 0.81467 1.90700 1.42564 1.71902 1.33530 1.23547 1.00862 0.97815 1.07877 1.85423 1.56349 1.29557 1.11894 1.22809 1.27542 1.13110 1.05005 0.91012 1.24990 0.96379 0.97730 0.94437 1.69999 1.39673 1.35285 1.05270 0.86228 0.80728 0.80724 0.77841 1.19927 1.20784 1.19937 1.22391 0.93797 1.03392 0.85336 1.22988 0.94234 0.88036 0.98047 1.87933 1.55808 1.39800 1.45325 0.88345 0.88496 0.87136 0.90274 0.94050 0.93889 0.90722 0.90397 0.89329 0.89772 0.90746 0.90224 0.94465 0.91142 0.88016 0.89367 0.89261 0.92087 0.90706 0.88413 0.87864 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 14.32 29.02 0.42 -0.88 16 2 C -0.16 -1.26 8.56 -36.02 -0.31 -1.57 16 3 C 0.08 0.67 5.72 -4.97 -0.03 0.64 16 4 N -0.53 -5.05 4.80 -236.09 -1.13 -6.18 16 5 C 0.06 0.52 5.30 -3.82 -0.02 0.50 16 6 C -0.10 -0.88 5.10 -26.69 -0.14 -1.02 16 7 C 0.11 1.14 0.68 -90.49 -0.06 1.08 16 8 C -0.14 -1.59 4.40 -26.69 -0.12 -1.70 16 9 C 0.06 0.57 4.87 -3.83 -0.02 0.56 16 10 C 0.09 1.18 5.30 -3.58 -0.02 1.16 16 11 N -0.62 -8.87 2.60 -172.32 -0.45 -9.32 16 12 C 0.54 10.13 7.73 -10.99 -0.08 10.04 16 13 O -0.51 -11.64 15.33 5.55 0.09 -11.55 16 14 C -0.15 -3.02 4.53 36.00 0.16 -2.86 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 20 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.07 0.82 6.54 -3.53 -0.02 0.79 16 25 C 0.04 0.42 6.61 37.31 0.25 0.67 16 26 O -0.37 -3.97 9.11 -35.23 -0.32 -4.29 16 27 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.10 0.62 7.84 -52.48 -0.41 0.20 16 29 H 0.11 0.88 6.48 -52.48 -0.34 0.54 16 30 H 0.08 0.58 7.79 -51.93 -0.40 0.18 16 31 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.04 0.40 7.77 -51.93 -0.40 0.00 16 33 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.94 6.08 -51.93 -0.32 0.63 16 38 H 0.08 0.79 5.79 -51.93 -0.30 0.49 16 39 H 0.04 0.38 7.77 -51.93 -0.40 -0.02 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.45 7.07 -51.93 -0.37 1.08 16 42 H 0.09 1.62 7.66 -51.92 -0.40 1.23 16 43 H 0.09 1.67 8.01 -51.91 -0.42 1.25 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.04 6.05 -51.93 -0.31 0.73 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.60 6.22 -51.93 -0.32 0.27 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -33.60 384.91 -10.05 -43.66 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.74 Total: 0.21 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.21 Total: -5.43 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.85 Total: -40.81 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.24 Total: -15.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.60 -10.05 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503692908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.468 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds